DY258242

Overview
NameDY258242
Unique NameDY258242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RYL2_YARLI (Ras-like GTP-binding protein RYL2 OS=Yarrowia lipolytica GN=RYL2 PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.673e-21
Identity = 65/203 (32.02%), Postives = 104/203 (51.23%), Query Frame = 2
Query:  221 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFL-------ETSAKDAINVEQAFLTMAGEI--KKKMGNQPTAN---KSSGTVQMKGQPIQQNSNCC 793
            K++L+G   VGK+C + R+ ++ +     STIG  F  + V ++  T++LQIWDTAGQERFR++   YYR A   I+ YDVT   SF+ +  WL E+ +  +  +   +V  K DLV+++    +       E    +L       E SAKD   VE+ F  +  ++  K++   Q   N   +    V +     +Q S+CC
Sbjct:    7 KIVLLGAQGVGKTCFVTRYVNNKFQAGQASTIGASFSRKRVVVNDTTVRLQIWDTAGQERFRSMAPIYYRSASCGILCYDVTSRASFDAMHLWLLELKQNLSSDIIIHIVGTKVDLVKDEPSLREVPFEQCVEYASEWLQDDSCCHEISAKDDEGVEEVFEVIITKLLDKREADEQQKHNSQRQRQSVVYLHTDEDEQKSSCC 209          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAP1B_XENTR (Ras-related protein Rap-1b OS=Xenopus tropicalis GN=rap1b PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.185e-21
Identity = 61/177 (34.46%), Postives = 97/177 (54.80%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADEL-GIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSS 742
            +KL+++G   VGKS L ++F    +V+ Y  TI   ++ + VE+DG+   L+I DTAG E+F  +   Y +   G  +VY +T   +FN+++    +I R  + D V  +LV NKCDL + +VV  +  +  A +     FLE+SAK  INV + F  +  +I +K      A K S
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKKS 179          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAP1B_XENLA (Ras-related protein Rap-1b OS=Xenopus laevis GN=rap1b PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.185e-21
Identity = 61/177 (34.46%), Postives = 97/177 (54.80%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADEL-GIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSS 742
            +KL+++G   VGKS L ++F    +V+ Y  TI   ++ + VE+DG+   L+I DTAG E+F  +   Y +   G  +VY +T   +FN+++    +I R  + D V  +LV NKCDL + +VV  +  +  A +     FLE+SAK  INV + F  +  +I +K      A K S
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKKS 179          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RSR1_CANAL (Ras-related protein RSR1 OS=Candida albicans GN=RSR1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.854e-21
Identity = 60/195 (30.77%), Postives = 105/195 (53.85%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYA-NDSVCKLLVWNKCDLVENKVVDTQTAKAFADELG-IPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSNCCG 796
            +K++++G   VGKS + ++F    YV+SY  TI   ++ + +E+DG+   L+I DTAG  +F  +   Y +   G ++VY VT+  S   +     ++ R   +D+V  +LV NKCDL +++V+  +     + + G +PF ETSA    NV++AF+ +  +I +K        K    +Q + Q  QQ  +  G
Sbjct:    4 YKVVVLGAGGVGKSSITVQFVQGVYVESYDPTIEDSYR-KQIEVDGRACDLEILDTAGVAQFTAMRELYIKSGKGFLLVYSVTDENSLKELLALREQVLRIKDSDNVPMVLVGNKCDLEDDRVLSIEDGVKVSQDWGLVPFYETSAMYKTNVDEAFIDVVRQIMRKEAAISAEKKQQKELQKQQQQQQQEQDAEG 197          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAPA_DICDI (Ras-related protein rapA OS=Dictyostelium discoideum GN=rapA PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.854e-21
Identity = 59/177 (33.33%), Postives = 96/177 (54.24%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELG-IPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSS 742
            FK++++G   VGKS L ++F    +V+ Y  TI   ++ + VE+D     L+I DTAG E+F  +   Y +   G ++VY +    +FN +     +I R  + + V  +LV NKCDL + +V+ T+  +  A + G   FLE SAK+ +NVEQ F  +  +I +K    P +   S
Sbjct:    6 FKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDSNQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSIISNSTFNELPDLREQILRVKDCEDVPMVLVGNKCDLHDQRVISTEQGEELARKFGDCYFLEASAKNKVNVEQIFYNLIRQINRKNPVGPPSKAKS 181          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB24_DICDI (Ras-related protein Rab-24 OS=Dictyostelium discoideum GN=rab24 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.854e-21
Identity = 63/197 (31.98%), Postives = 103/197 (52.28%), Query Frame = 2
Query:  221 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKL-LVWNKCDLVEN---KVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM--GNQPTANKSSGTVQMKGQPIQQNSNCC 793
            K++L+G +SVGK+C++ R+    + D++ +TIG  F  + V +    + L IWDTAG ER++ +  SYYR A+  I+ YD+T  ES+  V  W  E+ +  N+   ++ +V  K DL++    K V  +  K  A        ETS++   NV   F T+A +  K+   G  P  +  S  V +  Q  ++   CC
Sbjct:    9 KVVLLGYASVGKTCIVTRYTSGQFGDTH-TTIGGAFSSKRVVVGETEVLLGIWDTAGTERYQAVNVSYYRRANAAIVCYDLTNRESWEKVTFWAEELTQ--NEPEIEIYIVGTKLDLIQQGDIKAVPEEEVKQTARRYKAHIFETSSRTGENVSLLFQTIAEDFCKRTNNGTNPVNSNPSNVVNVNTQTQKKKGGCC 202          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: DJ27B_XENLA (DnaJ homolog subfamily C member 27-B OS=Xenopus laevis GN=dnajc27-B PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.854e-21
Identity = 54/200 (27.00%), Postives = 107/200 (53.50%), Query Frame = 2
Query:  221 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN--------DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVE---QAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSN 787
            K++ +G++ VGKSC++ R+ +  +V  Y +TIG+D+ +  V++  + IK+ I+D AG   F  + + +Y+   G+I+VYDV + ESF ++  WL E+ +           D++   +  NK D  +++ VD    + +++  G  + ETSA+    +    QAF +   ++    G +P +  + G  + +   I++  N
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVPKYQATIGIDYGVTKVQIKDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKESFESLDAWLAEMKQELGPQINIDNLDNIVFAVCANKIDSTKHRCVDESEGRLWSESKGFLYFETSAQSGEGINEMFQAFYSSIVDLCDNGGKRPVSAINIGFTKEQADSIRRIRN 217          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAP1B_CYPCA (Ras-related protein Rap-1b OS=Cyprinus carpio GN=rap1b PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.727e-21
Identity = 61/177 (34.46%), Postives = 97/177 (54.80%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADEL-GIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSS 742
            +KL+++G   VGKS L ++F    +V+ Y  TI   ++ + VE+DG+   L+I DTAG E+F  +   Y +   G  +VY +T   +FN+++    +I R  + D V  +LV NKCDL + +VV  +  +  A +     FLE+SAK  INV + F  +  +I +K      A K S
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPIILVGNKCDLEDERVVGKEQGQNLARQWNSCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKKS 179          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB7B_DICDI (Ras-related protein Rab-7B OS=Dictyostelium discoideum GN=rab7B PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.727e-21
Identity = 64/180 (35.56%), Postives = 102/180 (56.67%), Query Frame = 2
Query:  215 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEI--DRYANDSVC--KLLVWNKCDLVENKVVDTQTAKAFADELG--IPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANK 736
            + K+++IG+ SVGK+ +L R+ D  +V +   TIGVDF    V +    + LQ+WDT+GQERFR++  SYYRGA   I+V+DVT  ++  ++K W ++        D +    +++ NK D     V +    +   D +G  + + +TSAKD IN+EQ F      I  +  NQP +N+
Sbjct:    7 IIKVVIIGEKSVGKTSILRRYVDKRFV-TLKPTIGVDF----VMVSENMVTLQLWDTSGQERFRSLEISYYRGADYCILVFDVTNEKTLYDLKLWRDDFIEKTEIRDPILFPFIILGNKIDDPNRVVTEKAAIQWCKDNIGGNLTYFDTSAKDNINIEQVF----KHISNQCENQPQSNE 177          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAS2_NEUCR (Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.868e-21
Identity = 58/185 (31.35%), Postives = 97/185 (52.43%), Query Frame = 2
Query:  215 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDS--------------------VCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 709
            L+KL+++GD  VGK+ L ++   + +V++Y  TI   ++ + V +DG+   L++ DTAGQE +  +   + R   G ++VY ++   SF  +K++ ++I R    +                    V  +LV NK D V  + V TQ   A A ELG  F E SAK   NVE+AF  +  +++K+
Sbjct:    8 LYKLVVLGDGGVGKTALTIQLCLEHFVETYDPTIEDSYR-KQVVIDGQACMLEVLDTAGQEEYTALRDQWIRDGEGFVLVYSISSRSSFARIKKFHHQIQRVKESTSSPSAYPGSSPLAATNPSAPVPIMLVGNKSDRVTEREVSTQEGHALARELGCEFTEASAKTRTNVEKAFYDVVKQLRKQ 191          
The following BLAST results are available for this feature:
BLAST of DY258242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RYL2_YARLI1.673e-2132.02Ras-like GTP-binding protein RYL2 OS=Yarrowia lipo... [more]
RAP1B_XENTR2.185e-2134.46Ras-related protein Rap-1b OS=Xenopus tropicalis G... [more]
RAP1B_XENLA2.185e-2134.46Ras-related protein Rap-1b OS=Xenopus laevis GN=ra... [more]
RSR1_CANAL2.854e-2130.77Ras-related protein RSR1 OS=Candida albicans GN=RS... [more]
RAPA_DICDI2.854e-2133.33Ras-related protein rapA OS=Dictyostelium discoide... [more]
RAB24_DICDI2.854e-2131.98Ras-related protein Rab-24 OS=Dictyostelium discoi... [more]
DJ27B_XENLA2.854e-2127.00DnaJ homolog subfamily C member 27-B OS=Xenopus la... [more]
RAP1B_CYPCA3.727e-2134.46Ras-related protein Rap-1b OS=Cyprinus carpio GN=r... [more]
RAB7B_DICDI3.727e-2135.56Ras-related protein Rab-7B OS=Dictyostelium discoi... [more]
RAS2_NEUCR4.868e-2131.35Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258242 ID=DY258242; Name=DY258242; organism=Citrus clementina; type=EST; length=930bp
GAATGAATGTCGTAAACAGTAATTAAATAATAGCAATAATGAGTGGACAA
AGCTAAGTTCGAGAGGTGAGATAGAAAATTCTCCCGCACGACACAGCGCA
AACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAG
GGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCA
ACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTC
GGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAG
CTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGG
ATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGA
TTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAAT
TGTCTATGACGTAACTGAGATGGAGAGCTTCAATAATGTCAAGCGGTGGT
TGAATGAGATTGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTT
TGGAACAAATGCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGC
CAAGGCATTTGCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCA
AAGATGCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATT
AAGAAAAAAATGGGCAACCAGCCTACTGCAAACAAATCTTCTGGAACAGT
TCAGATGAAGGGACAGCCAATCCAGCAAAACAGCAACTGCTGTGGTTAGC
CGAGCATGTTATTTTACTACTACATATTAGCTGACTGATTGTAGACAGTT
TTAACGATGTTGACTGCATTATCTTATGAATCTTTTAATCTGTCAAATAT
TTATTTCCTGGTTTAAGTTCTTTCCCCGTT
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