DY258242

Overview
NameDY258242
Unique NameDY258242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 2.092e-56
Identity = 110/208 (52.88%), Postives = 148/208 (71.15%), Query Frame = 2
Query:  203 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENK-VVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMK-GQPIQ---------QNSNCC 793
            +YD L KLLL+GDS VGKSCLLLRF DD +  S+I+TIG+DFKI+ V++DGK +KLQIWDTAGQERFRTITS+YYRGA GII+VYD+T+  SFNNV+ W+  I+++A+D+V K+LV NK DL E+K VV     +A ADE G  F ETSAKD ++VE+AF+ +A ++  +M  +    +     Q+   QP++         Q  +CC
Sbjct:    9 DYDALIKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARMEGEHANQQLLQQQQLSAAQPVRLTSGSPSPAQGKSCC 216          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 2.092e-56
Identity = 107/199 (53.77%), Postives = 144/199 (72.36%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQ-MKGQPIQQNSN 787
            M+  YDYLFKLLLIGDS VGK+C L RF++D++  ++ISTIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T  +SF N++ W+  I+ +A+  V K+++ NKCD  + + V  +  +  A   GI F+ETSAK  IN+E AF T+A +IK KM  +   N   G+ Q +K  P QQ  +
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKKS 199          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.732e-56
Identity = 107/162 (66.05%), Postives = 135/162 (83.33%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAF 679
            M+ +YD+LFKLL+IGDS VGKS LLLRFAD+++  SYI+TIGVDFKIRTVE++G+ +KLQIWDTAGQERFRTITS+YYRG HG+I+VYDVT  ESF NVKRWL+EI++  +D VC++LV NK D  E KVV+T+ A  FA ++GI   ETSAK+ +NVE+ F
Sbjct:    1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDD-VCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 161          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.732e-56
Identity = 107/162 (66.05%), Postives = 135/162 (83.33%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAF 679
            M+ +YD+LFKLL+IGDS VGKS LLLRFAD+++  SYI+TIGVDFKIRTVE++G+ +KLQIWDTAGQERFRTITS+YYRG HG+I+VYDVT  ESF NVKRWL+EI++  +D VC++LV NK D  E KVV+T+ A  FA ++GI   ETSAK+ +NVE+ F
Sbjct:    1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDD-VCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 161          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.732e-56
Identity = 107/162 (66.05%), Postives = 135/162 (83.33%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAF 679
            M+ +YD+LFKLL+IGDS VGKS LLLRFAD+++  SYI+TIGVDFKIRTVE++G+ +KLQIWDTAGQERFRTITS+YYRG HG+I+VYDVT  ESF NVKRWL+EI++  +D VC++LV NK D  E KVV+T+ A  FA ++GI   ETSAK+ +NVE+ F
Sbjct:    1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDD-VCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 161          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.569e-56
Identity = 110/186 (59.14%), Postives = 144/186 (77.42%), Query Frame = 2
Query:  203 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNV-KRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQM 757
            EYDYLFK+++IGDS  GKS LLLRFAD++Y +SY+STIGVDFKI+TV++D  TIKLQIWDTAGQERFRTITS+YYRGAHGII VYDVT   SF+++ + WL +ID+YA  +VCKLL+ NK DLV+++VV    AK  A++  + ++E SAK   NVE+AF T+A  +K K+   P +N  + TV +
Sbjct:    3 EYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLVDSRVVLADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYP-SNAPTSTVNL 187          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.038e-55
Identity = 107/196 (54.59%), Postives = 146/196 (74.49%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQ-MKGQPIQQ 778
            M+  YDYLFKLLLIGDS VGK+C+L RF++D++  ++ISTIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T  +SF+N++ W+  I+ +A+  V K+++ NK D+ + + V  +  +  A + GI F+ETSAK  INVE AF T+A +IK KM  +   N   G+ Q +K  P QQ
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQ 196          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 6.730e-55
Identity = 104/200 (52.00%), Postives = 146/200 (73.00%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSNCC 793
            M+  YD+LFKLLLIGDS VGK+CL++RFA+D++  +YISTIG+DFKIRTVE++GK IKLQ+WDTAGQERF+TIT++YYRGA GII+VYD+T+ +SF N++ W+  I   A+  V +LL+ NKCD+   + V  + A+  A E  I F ETSAK ++NV++AF ++A +I  K G + + N S  +        ++NSN C
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRSGNSSKPSSTDLKVSDKKNSNKC 200          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.790e-55
Identity = 109/198 (55.05%), Postives = 141/198 (71.21%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMK--GQPIQQNSNCC 793
            YD LFKLLLIGDS VGK+C+L RF+DD++  ++ISTIG+DFKI+TVEL GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T  +SF N+ +WL  ID +AN+ V ++L+ NKCD+ + +VV     +  A E GI F ETSAK  IN+E+AFLT+A +I +K    P    +S  V +   G      S CC
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRK---TPVKEPNSENVDISSGGGVTGWKSKCC 200          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.790e-55
Identity = 109/198 (55.05%), Postives = 141/198 (71.21%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMK--GQPIQQNSNCC 793
            YD LFKLLLIGDS VGK+C+L RF+DD++  ++ISTIG+DFKI+TVEL GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T  +SF N+ +WL  ID +AN+ V ++L+ NKCD+ + +VV     +  A E GI F ETSAK  IN+E+AFLT+A +I +K    P    +S  V +   G      S CC
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRK---TPVKEPNSENVDISSGGGVTGWKSKCC 200          
The following BLAST results are available for this feature:
BLAST of DY258242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPTV2_VOLCA2.092e-5652.88GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
RAB8A_CHICK2.092e-5653.77Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB35_RAT2.732e-5666.05Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]
RAB35_MOUSE2.732e-5666.05Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]
RAB35_HUMAN2.732e-5666.05Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3... [more]
RAB1_THEAN3.569e-5659.14Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
RAB8A_PONAB1.038e-5554.59Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB13_RAT6.730e-5552.00Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RAB10_PONAB8.790e-5555.05Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE8.790e-5555.05Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258242 ID=DY258242; Name=DY258242; organism=Citrus clementina; type=EST; length=930bp
GAATGAATGTCGTAAACAGTAATTAAATAATAGCAATAATGAGTGGACAA
AGCTAAGTTCGAGAGGTGAGATAGAAAATTCTCCCGCACGACACAGCGCA
AACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAG
GGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCA
ACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTC
GGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAG
CTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGG
ATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGA
TTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAAT
TGTCTATGACGTAACTGAGATGGAGAGCTTCAATAATGTCAAGCGGTGGT
TGAATGAGATTGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTT
TGGAACAAATGCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGC
CAAGGCATTTGCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCA
AAGATGCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATT
AAGAAAAAAATGGGCAACCAGCCTACTGCAAACAAATCTTCTGGAACAGT
TCAGATGAAGGGACAGCCAATCCAGCAAAACAGCAACTGCTGTGGTTAGC
CGAGCATGTTATTTTACTACTACATATTAGCTGACTGATTGTAGACAGTT
TTAACGATGTTGACTGCATTATCTTATGAATCTTTTAATCTGTCAAATAT
TTATTTCCTGGTTTAAGTTCTTTCCCCGTT
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