DY258252

Overview
NameDY258252
Unique NameDY258252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1124
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10106 contig Ccv1_Contig10106:4..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.811e-14
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 3 
Query:  252 RLQKELAEWQVNPPSGFK-HKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWS 521
            RLQ+EL    ++   G      +DNL +WV  ++GA GT+Y +  Y+L +EFP  YP  AP V FL P   HP+V + G+ICLDIL D WS
Sbjct:   34 RLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPC-YHPNVDTQGNICLDILKDKWS 123
[Close]
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.295e-13
Identity = 42/91 (46.15%), Postives = 55/91 (60.44%), Query Frame = 3 
Query:  252 RLQKELAEWQVNPPSGFK-HKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWS 521
            RLQ+EL     +   G      +DNL +WV  ++GA GT+Y +  Y+L +EFP  YP  AP V FL P   HP+V + G+ICLDIL D WS
Sbjct:   34 RLQQELMILMTSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPC-YHPNVDTQGNICLDILKDKWS 123
[Close]
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.691e-13
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 3 
Query:  252 RLQKELAEWQVNPPSGFK-HKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWS 521
            RLQ+EL    ++   G      +DNL +WV  ++GA GT+Y +  Y+L +EFP  YP  AP V FL P   HP+V + G+ICLDIL + WS
Sbjct:   34 RLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPC-YHPNVDTQGNICLDILKEKWS 123
[Close]
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.208e-13
Identity = 40/99 (40.40%), Postives = 56/99 (56.57%), Query Frame = 3 
Query:  243 ACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +  R+QKELAE  ++PP         DNL  WV  + G PG++Y    + L + F   YP + P+V F      H ++ S G ICLDIL D+WSPA+T+
Sbjct:   87 SAKRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTF-RTRIYHCNINSQGVICLDILKDNWSPALTI 184
[Close]
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.208e-13
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 3 
Query:  240 IACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            ++  R+ KEL++   +PPS        D+L  W   + G P + YA   + L + FP  YP++ P++  L     HP++ SNG+ICLDIL D WSPA+T+
Sbjct:    1 MSLKRINKELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIA-LTTKIYHPNINSNGNICLDILKDQWSPALTI 99
[Close]
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 3.767e-13
Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = 3 
Query:  180 QSRETSMSGSSTTTRKALSKIACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            Q + T +S  +T      +K    R+QKELAE  ++PP         DN+  W   + G PG++Y    + L + F   YP + P+V F      H ++ S G ICLDIL D+WSPA+T+
Sbjct:   45 QKKNTKLSSKTTAKLSTSAK----RIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTF-RTRIYHCNINSQGVICLDILKDNWSPALTI 159
[Close]
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.767e-13
Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = 3 
Query:  180 QSRETSMSGSSTTTRKALSKIACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            Q + T +S  +T      +K    R+QKELAE  ++PP         DN+  W   + G PG++Y    + L + F   YP + P+V F      H ++ S G ICLDIL D+WSPA+T+
Sbjct:   45 QKKNTKLSSKTTAKLSTSAK----RIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTF-RTRIYHCNINSQGVICLDILKDNWSPALTI 159
[Close]
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.767e-13
Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = 3 
Query:  180 QSRETSMSGSSTTTRKALSKIACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            Q + T +S  +T      +K    R+QKELAE  ++PP         DN+  W   + G PG++Y    + L + F   YP + P+V F      H ++ S G ICLDIL D+WSPA+T+
Sbjct:   45 QKKNTKLSSKTTAKLSTSAK----RIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTF-RTRIYHCNINSQGVICLDILKDNWSPALTI 159
[Close]
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.767e-13
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 3 
Query:  240 IACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +A  R+QKEL++ Q +PP+        D+L  W   + G P + Y    + L V FP  YP + P++ F      HP++ SNG ICLDIL   WSPA+TV
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT-TKIYHPNINSNGSICLDILRSQWSPALTV 99
[Close]
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.767e-13
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 3 
Query:  240 IACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +A  R+QKEL++ Q +PP+        D+L  W   + G P + Y    + L V FP  YP + P++ F      HP++ SNG ICLDIL   WSPA+TV
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT-TKIYHPNINSNGSICLDILRSQWSPALTV 99
The following BLAST results are available for this feature:
BLAST of DY258252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
UBE2C_BOVIN5.811e-1446.15Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBE2C_MOUSE1.295e-1346.15Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UBE2C_HUMAN1.691e-1345.05Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBCD2_DROME2.208e-1340.40Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UBC4_CANAL2.208e-1338.00Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UB2E3_MOUSE3.767e-1335.83Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN3.767e-1335.83Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN3.767e-1335.83Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UB2D1_MOUSE3.767e-1340.00Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN3.767e-1340.00Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DD05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258252 ID=DY258252; Name=DY258252; organism=Citrus clementina; type=EST; length=1124bp
GGAGATATGGCTTTGGGGAACGCATGAAGCATTAGAGTGAAGGCGGATTG
GGAGTTTTGTTTGTCGTTTTTTTCTCTTTCTTCTTCGTCAAACCCGAACC
CGAACCCGAACCCGTTGATTTCAATTCAGCAAAACTACAAACTTGATCTA
CCATTCATCTCTGCTCGAATATCGATTTTCAATCTCGAGAAACAAGCATG
TCTGGCTCGTCCACCACCACTCGCAAGGCTCTGAGTAAGATTGCTTGCAA
TCGCCTTCAGAAAGAGCTTGCGGAGTGGCAGGTCAACCCACCTTCTGGTT
TCAAACATAAGGCCACCGATAATCTCCAAAGGTGGGTTATTGAAGTAAAT
GGAGCTCCAGGGACCCTCTACGCTAATGAAACCTACCAACTTCAGGTTGA
GTTTCCCGAACGTTACCCCATGGAGGCCCCTCAGGTCATTTTTCTTCATC
CCTCTCCTCTTCATCCTCACGTTTACAGCAATGGTCATATTTGCTTAGAT
ATCCTGTACGATTCATGGTCCCCAGCAATGACCGTTAGTTCCATTTGTAT
CAGTATTCTCTCCATGCTATCAAGCTCCACTGTAAAGCAACGTCCTGAAG
ATAACGACCGCTATGTGAAGAACTGCAGAAATGGCCGATCTCCTAAGGAG
ACTAGGTGGTGGTTCCATGATGATAAAGTGTAATAAGCAAATTATCCTTT
CTCATCAATCAGTTTAAATAATTAGTGTAGGTGGCTTCCTATTTTAAAGG
AAATGAAAGCAGAAGAGTAAAAGTCTAAAGAAGCATTCTGTAAATGTTTT
TTGGGCTCTTTGCTTAAATAACTCCTGTAAATGGCAATGCCTGGTATCTG
CAAAGAGTTACTTCTCTGTTTTTAGCGGTGTGGGAGGATCAAACTTCATC
ACGTCTTTGTGATAAACCCCCGGCGAGATGTACTTGGGACCTTGGGAGAT
TGAATTTGAAATCCTCCCGGAATATTCTTAAAAATCTGGAAAGTGGCGGT
CCGGAGATTTCCCAGGGAAAACCTTTGCTCCAAACCAACCAAAAAAGTTA
CTTTTTTTATTTTTAATTTTTTCTTTTTCCCAAAAGTCCCAAGGGTTTAA
AAAAACCTTTTTGGGTTGGCTTTA
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