DY258252

Overview
NameDY258252
Unique NameDY258252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1124
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10106 contig Ccv1_Contig10106:4..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.767e-13
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:  240 IACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +A  R+QKEL++ Q +PP+        D+L  W   + G P + Y    + L V FP  YP + P++ F      HP++ SNG ICLDIL   WSPA+TV
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT-TKIYHPNINSNGSICLDILRSQWSPALTV 99          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 6.425e-13
Identity = 38/103 (36.89%), Postives = 58/103 (56.31%), Query Frame = 3
Query:  231 LSKIACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +S  A  RL ++    Q +PP+G       DN+  W   + G   T + + T++L ++F E+YP + PQV F+     HP+VY+NG +CLDIL + WSP   V
Sbjct:    1 MSTAARRRLMRDFKRMQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQM-FHPNVYANGELCLDILQNRWSPTYDV 102          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.431e-12
Identity = 37/100 (37.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:  240 IACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +A  R+ KEL E Q +PP       T +++  W   + G   + Y+   + + + FP  YP + P+V+F      HP++ SNG+ICLDIL D WSPA+T+
Sbjct:    1 MATRRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVF-RTKVFHPNINSNGNICLDILKDQWSPALTI 99          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.431e-12
Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:  240 IACNRLQKELAEWQVNPPSGFKH-KATDNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +A  R+ KEL + Q +PPS        +++  W   + G P + YA   + + + FP  YP + P+V F      HP++ SNG ICLDIL + WSPA+T+
Sbjct:    1 MASKRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSF-KTKVYHPNINSNGSICLDILKEQWSPALTI 99          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.442e-12
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 3
Query:  231 LSKIACNRLQKELAEWQVNPPSGFKHKATDN-LQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +S  A  RL ++    Q +PP G     ++N + +W   + G  GT + + T++L +EF E YP + P V FL     HP+VY++G ICLDIL + WSP   V
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKM-FHPNVYADGSICLDILQNRWSPTYDV 102          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.442e-12
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 3
Query:  231 LSKIACNRLQKELAEWQVNPPSGFKHKATDN-LQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +S  A  RL ++    Q +PP G     ++N + +W   + G  GT + + T++L +EF E YP + P V FL     HP+VY++G ICLDIL + WSP   V
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKM-FHPNVYADGSICLDILQNRWSPTYDV 102          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.442e-12
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 3
Query:  231 LSKIACNRLQKELAEWQVNPPSGFKHKATDN-LQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +S  A  RL ++    Q +PP G     ++N + +W   + G  GT + + T++L +EF E YP + P V FL     HP+VY++G ICLDIL + WSP   V
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKM-FHPNVYADGSICLDILQNRWSPTYDV 102          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.442e-12
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 3
Query:  231 LSKIACNRLQKELAEWQVNPPSGFKHKATDN-LQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +S  A  RL ++    Q +PP G     ++N + +W   + G  GT + + T++L +EF E YP + P V FL     HP+VY++G ICLDIL + WSP   V
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKM-FHPNVYADGSICLDILQNRWSPTYDV 102          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.442e-12
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 3
Query:  231 LSKIACNRLQKELAEWQVNPPSGFKHKATDN-LQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +S  A  RL ++    Q +PP G     ++N + +W   + G  GT + + T++L +EF E YP + P V FL     HP+VY++G ICLDIL + WSP   V
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKM-FHPNVYADGSICLDILQNRWSPTYDV 102          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.442e-12
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  231 LSKIACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +S  A  RL ++    Q +PP+G       DN+  W   + G   T + + T++L ++F E+YP + PQV F+     HP+VY+ G +CLDIL + WSP   V
Sbjct:    1 MSTAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEM-FHPNVYATGELCLDILQNRWSPTYDV 102          
The following BLAST results are available for this feature:
BLAST of DY258252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
UB2D1_BOVIN3.767e-1340.00Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBC2_TRIHA6.425e-1336.89Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC29_ARATH1.431e-1237.00Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC11_ARATH1.431e-1237.00Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBE2B_RAT2.442e-1237.86Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT2.442e-1237.86Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE2.442e-1237.86Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN2.442e-1237.86Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN2.442e-1237.86Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBC2_NECHA2.442e-1235.92Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DD05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258252 ID=DY258252; Name=DY258252; organism=Citrus clementina; type=EST; length=1124bp
GGAGATATGGCTTTGGGGAACGCATGAAGCATTAGAGTGAAGGCGGATTG
GGAGTTTTGTTTGTCGTTTTTTTCTCTTTCTTCTTCGTCAAACCCGAACC
CGAACCCGAACCCGTTGATTTCAATTCAGCAAAACTACAAACTTGATCTA
CCATTCATCTCTGCTCGAATATCGATTTTCAATCTCGAGAAACAAGCATG
TCTGGCTCGTCCACCACCACTCGCAAGGCTCTGAGTAAGATTGCTTGCAA
TCGCCTTCAGAAAGAGCTTGCGGAGTGGCAGGTCAACCCACCTTCTGGTT
TCAAACATAAGGCCACCGATAATCTCCAAAGGTGGGTTATTGAAGTAAAT
GGAGCTCCAGGGACCCTCTACGCTAATGAAACCTACCAACTTCAGGTTGA
GTTTCCCGAACGTTACCCCATGGAGGCCCCTCAGGTCATTTTTCTTCATC
CCTCTCCTCTTCATCCTCACGTTTACAGCAATGGTCATATTTGCTTAGAT
ATCCTGTACGATTCATGGTCCCCAGCAATGACCGTTAGTTCCATTTGTAT
CAGTATTCTCTCCATGCTATCAAGCTCCACTGTAAAGCAACGTCCTGAAG
ATAACGACCGCTATGTGAAGAACTGCAGAAATGGCCGATCTCCTAAGGAG
ACTAGGTGGTGGTTCCATGATGATAAAGTGTAATAAGCAAATTATCCTTT
CTCATCAATCAGTTTAAATAATTAGTGTAGGTGGCTTCCTATTTTAAAGG
AAATGAAAGCAGAAGAGTAAAAGTCTAAAGAAGCATTCTGTAAATGTTTT
TTGGGCTCTTTGCTTAAATAACTCCTGTAAATGGCAATGCCTGGTATCTG
CAAAGAGTTACTTCTCTGTTTTTAGCGGTGTGGGAGGATCAAACTTCATC
ACGTCTTTGTGATAAACCCCCGGCGAGATGTACTTGGGACCTTGGGAGAT
TGAATTTGAAATCCTCCCGGAATATTCTTAAAAATCTGGAAAGTGGCGGT
CCGGAGATTTCCCAGGGAAAACCTTTGCTCCAAACCAACCAAAAAAGTTA
CTTTTTTTATTTTTAATTTTTTCTTTTTCCCAAAAGTCCCAAGGGTTTAA
AAAAACCTTTTTGGGTTGGCTTTA
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