DY258252

Overview
NameDY258252
Unique NameDY258252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1124
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10106 contig Ccv1_Contig10106:4..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.605e-11
Identity = 37/100 (37.00%), Postives = 53/100 (53.00%), Query Frame = 3
Query:  240 IACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +A  R+ KEL +   +PP+        D+L  W   + G P + Y    + L + FP  YP + P+V F      HP++ SNG ICLDIL   WSPA+T+
Sbjct:    1 MALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFT-TRIYHPNINSNGSICLDILRSQWSPALTI 99          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.605e-11
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 3
Query:  252 RLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            R+ KEL++   +PP+        D+L  W   + G   + YA   + L + FP  YP + P+V F      HP++ S+G+ICLDIL D WSPA+T+
Sbjct:    6 RIAKELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFT-TKIYHPNINSSGNICLDILKDQWSPALTL 100          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.854e-11
Identity = 38/103 (36.89%), Postives = 54/103 (52.43%), Query Frame = 3
Query:  231 LSKIACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +S  A  RL ++    + + P G       DN+  W   + G   T Y + T++L +EF E YP + P V FL     HP+VY+NG ICLDIL + W+P   V
Sbjct:    1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEM-FHPNVYANGEICLDILQNRWTPTYDV 102          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.854e-11
Identity = 38/103 (36.89%), Postives = 54/103 (52.43%), Query Frame = 3
Query:  231 LSKIACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +S  A  RL ++    + + P G       DN+  W   + G   T Y + T++L +EF E YP + P V FL     HP+VY+NG ICLDIL + W+P   V
Sbjct:    1 MSTPARRRLMRDFKRMKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEM-FHPNVYANGEICLDILQNRWTPTYDV 102          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.854e-11
Identity = 38/103 (36.89%), Postives = 54/103 (52.43%), Query Frame = 3
Query:  231 LSKIACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +S  A  RL ++    + + P G       DN+  W   + G   T Y + T++L +EF E YP + P V FL     HP+VY+NG ICLDIL + W+P   V
Sbjct:    1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEM-FHPNVYANGEICLDILQNRWTPTYDV 102          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.854e-11
Identity = 37/100 (37.00%), Postives = 54/100 (54.00%), Query Frame = 3
Query:  240 IACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +A  R+ KEL +   +PPS        ++L  W   + G   + Y+   + L + FP  YP + P+V F      HP++ SNG ICLDIL D WSPA+T+
Sbjct:    1 MAFKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFT-TRIYHPNINSNGSICLDILRDQWSPALTI 99          
The following BLAST results are available for this feature:
BLAST of DY258252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
UBCD1_DROME4.605e-1137.00Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC5_YEAST4.605e-1137.50Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC2_YEAST7.854e-1136.89Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_KLULA7.854e-1136.89Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC2_ASHGO7.854e-1136.89Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBC1_COLGL7.854e-1137.00Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DD05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258252 ID=DY258252; Name=DY258252; organism=Citrus clementina; type=EST; length=1124bp
GGAGATATGGCTTTGGGGAACGCATGAAGCATTAGAGTGAAGGCGGATTG
GGAGTTTTGTTTGTCGTTTTTTTCTCTTTCTTCTTCGTCAAACCCGAACC
CGAACCCGAACCCGTTGATTTCAATTCAGCAAAACTACAAACTTGATCTA
CCATTCATCTCTGCTCGAATATCGATTTTCAATCTCGAGAAACAAGCATG
TCTGGCTCGTCCACCACCACTCGCAAGGCTCTGAGTAAGATTGCTTGCAA
TCGCCTTCAGAAAGAGCTTGCGGAGTGGCAGGTCAACCCACCTTCTGGTT
TCAAACATAAGGCCACCGATAATCTCCAAAGGTGGGTTATTGAAGTAAAT
GGAGCTCCAGGGACCCTCTACGCTAATGAAACCTACCAACTTCAGGTTGA
GTTTCCCGAACGTTACCCCATGGAGGCCCCTCAGGTCATTTTTCTTCATC
CCTCTCCTCTTCATCCTCACGTTTACAGCAATGGTCATATTTGCTTAGAT
ATCCTGTACGATTCATGGTCCCCAGCAATGACCGTTAGTTCCATTTGTAT
CAGTATTCTCTCCATGCTATCAAGCTCCACTGTAAAGCAACGTCCTGAAG
ATAACGACCGCTATGTGAAGAACTGCAGAAATGGCCGATCTCCTAAGGAG
ACTAGGTGGTGGTTCCATGATGATAAAGTGTAATAAGCAAATTATCCTTT
CTCATCAATCAGTTTAAATAATTAGTGTAGGTGGCTTCCTATTTTAAAGG
AAATGAAAGCAGAAGAGTAAAAGTCTAAAGAAGCATTCTGTAAATGTTTT
TTGGGCTCTTTGCTTAAATAACTCCTGTAAATGGCAATGCCTGGTATCTG
CAAAGAGTTACTTCTCTGTTTTTAGCGGTGTGGGAGGATCAAACTTCATC
ACGTCTTTGTGATAAACCCCCGGCGAGATGTACTTGGGACCTTGGGAGAT
TGAATTTGAAATCCTCCCGGAATATTCTTAAAAATCTGGAAAGTGGCGGT
CCGGAGATTTCCCAGGGAAAACCTTTGCTCCAAACCAACCAAAAAAGTTA
CTTTTTTTATTTTTAATTTTTTCTTTTTCCCAAAAGTCCCAAGGGTTTAA
AAAAACCTTTTTGGGTTGGCTTTA
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