DY258260

Overview
NameDY258260
Unique NameDY258260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9901 contig Ccv1_Contig9901:53..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258260 vs. ExPASy Swiss-Prot
Match: CYTM_SOLTU (Multicystatin OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.266e-14
Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = 3
Query:   33 RLTQKTMATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSSTA*LV 359
            +L    +A +GG+ +V    NN E  +LARFA+  +NKK+N +L+F            G +Y ITL A++ G+KK++E K+W K W  FK++ EF  V    + T  ++
Sbjct:  184 KLVGDDIAKLGGITDVPFP-NNPEFQDLARFAIQVYNKKENVHLEFVENLNVKQQVVAGMMYYITLAAIDAGKKKIYETKIWVKEWEDFKKVVEFKLVGDDSAKTGGII 291          

HSP 2 Score: 79.337 bits (194), Expect = 1.654e-14
Identity = 40/98 (40.82%), Postives = 59/98 (60.20%), Query Frame = 3
Query:   33 RLTQKTMATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNTV 326
            +L     A +GG+  V    NN E  +LARFAV ++NKK+N++L+F            G LY ITL A++ G+KK++EAK+W K W  FK++ EF  +
Sbjct:  467 KLVGDDSAKLGGIINVPFP-NNPEFQDLARFAVQDYNKKENAHLEFVENLNVKEQLVAGMLYYITLVAIDAGKKKIYEAKIWVKEWENFKKVIEFKLI 563          

HSP 3 Score: 78.5666 bits (192), Expect = 2.821e-14
Identity = 38/103 (36.89%), Postives = 60/103 (58.25%), Query Frame = 3
Query:   54 ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSSTA*LVV 362
            A +GG  +V    NN E  +LARFAV ++NKK+N++L++            G +Y ITL A + G+KK++EAK+W K W  FK++ EF  V    +    +++
Sbjct:  568 AIIGGFTDVPFP-NNPEFQDLARFAVQDYNKKENAHLEYVENLNVKEQLVAGMIYYITLVATDAGKKKIYEAKIWVKEWEDFKKVVEFKLVGDDSAKPGGIII 669          

HSP 4 Score: 72.7886 bits (177), Expect = 1.548e-12
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 3
Query:   60 VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNTV 326
            +GG  EV    N+ E  +L RFAV ++NK QN++L+F            G LY IT  A +GG+KK++E K+W K W  FK++ EF  V
Sbjct:  382 LGGFTEVPFP-NSPEFQDLTRFAVHQYNKDQNAHLEFVENLNVKKQVVAGMLYYITFAATDGGKKKIYETKIWVKVWENFKKVVEFKLV 469          

HSP 5 Score: 70.0922 bits (170), Expect = 1.003e-11
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 3
Query:   63 GGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAV-EGGQKKLFEAKVWEKPWMQFKELKEFNTV 326
            GG+  V    NN +   LARFA+ ++NKKQN++L+F            G +Y ITL A  + G+KK+++AK+W K W  FK++ EF  V
Sbjct:   99 GGIVNVP-NPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDAGKKKIYKAKIWVKEWEDFKKVVEFKLV 186          

HSP 6 Score: 70.0922 bits (170), Expect = 1.003e-11
Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = 3
Query:   33 RLTQKTMATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNTV 326
            +L     A  GG+  V    N+ E  +LARFAV ++N  QN++L+F            G +Y ITL A + G KK +EAK+W K W  FK++ +F  V
Sbjct:  278 KLVGDDSAKTGGIINVP-NPNSPEFQDLARFAVQDYNNTQNAHLEFVENLNVKEQLVSGMMYYITLAATDAGNKKEYEAKIWVKEWEDFKKVIDFKLV 374          
BLAST of DY258260 vs. ExPASy Swiss-Prot
Match: CYT3_ORYSJ (Cysteine proteinase inhibitor 3 OS=Oryza sativa subsp. japonica GN=Os05g0409300 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  102 EIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSSTA 350
            E  + ARFAV E+NK Q + L+F            GTL+D+ LE V+ G+K L+ AKVW KPW+ FK + EF  V  S S +A
Sbjct:   59 EAEDAARFAVAEYNKNQGAELEFARIVKAKRQVVTGTLHDLMLEVVDSGKKSLYSAKVWVKPWLDFKAVVEFRHVGDSQSQSA 141          
BLAST of DY258260 vs. ExPASy Swiss-Prot
Match: CYT2_ORYSJ (Cysteine proteinase inhibitor 2 OS=Oryza sativa subsp. japonica GN=Os05g0494200 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.919e-11
Identity = 37/88 (42.05%), Postives = 50/88 (56.82%), Query Frame = 3
Query:   60 VGGVREVEATANNQ-EIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVE-GGQKKLFEAKVWEKPWMQFKELKEF 317
            VGG+ +  A   N    V LARFAV EHN K N+ L+             G ++ +T+E  E GG  KL+EAKVWE+ W  FK+L++F
Sbjct:   56 VGGIHDAPAGRENDLTTVELARFAVAEHNSKANAMLELERVVKVRQQVVGGFMHYLTVEVKEPGGANKLYEAKVWERAWENFKQLQDF 143          
The following BLAST results are available for this feature:
BLAST of DY258260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CYTM_SOLTU1.266e-1435.78Multicystatin OS=Solanum tuberosum PE=2 SV=1[more]
CYT3_ORYSJ1.072e-1344.58Cysteine proteinase inhibitor 3 OS=Oryza sativa su... [more]
CYT2_ORYSJ2.919e-1142.05Cysteine proteinase inhibitor 2 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DE01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258260 ID=DY258260; Name=DY258260; organism=Citrus clementina; type=EST; length=616bp
GAACTTAAAATCTTTCTCATCGCTTTATCATCAGACTTACGCAGAAAACA
ATGGCTACAGTAGGCGGTGTTCGTGAGGTTGAAGCAACAGCCAACAATCA
GGAGATCGTTAATCTCGCACGCTTCGCTGTGGATGAGCATAACAAGAAGC
AGAATTCAAATCTGCAATTTGTAAAAGTTGTAAGTGCGAAGCAGCAAGTG
GTTTCAGGGACTCTGTACGACATCACCTTGGAGGCTGTTGAAGGAGGTCA
GAAGAAACTTTTTGAAGCTAAGGTCTGGGAGAAGCCTTGGATGCAATTCA
AGGAGTTGAAAGAATTCAATACTGTGGCTCAGTCTCACTCCTCAACCGCT
TAGCTTGTGGTGACTGAAGATGACATCTACGTGTAGCTTGCAATGGATCA
AACAAAGAGACAGTATCAATAAGAATGGAGCTATAACCATGTTCAGAATA
TAAAAATAAATGTAACCGGATTTATGAGTTTGGTTCTTTAATCTTTTGCA
AGTTATGTGTCGATTATTTATGGTAGTAGCTGCAACTCAGCGCAACTTTT
ATAACTGTGTGAAAAATAATTGAAATGACCTTTGGTCTGTAATATATATA
CAAGATTAATCTCTTT
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