DY258284

Overview
NameDY258284
Unique NameDY258284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1315
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258284 vs. ExPASy Swiss-Prot
Match: EPB1B_XENLA (Ephrin type-B receptor 1-B (Fragment) OS=Xenopus laevis GN=ephb1-B PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.506e-16
Identity = 65/213 (30.52%), Postives = 107/213 (50.23%), Query Frame = 3
Query:  195 KNILGRGGFGKVYKGRLADGKL-------VAVKRLKEERTSGGELQFQTEVKIISMAVHRNLLGLCGFCTTVTEKLLVYRYMANGSVASRLRERQSSLPPLDWPTRKKIALGSARGLSYLHEHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLM--DYKDTHITTAVHG--TVGHIAPEYLSTGRSSEKTDVFGYGIMLLELIT-GQRAF 797
            + ++G G FG+VYKGRL   KL       VA+K LK   +      F +E  I+    H N++ L G  T     +++  +M NG++ S LR+       +      +   G A G+ YL E      +HRD+ A NIL++      V DFGL++ +  D  D   T+++ G   V   APE +   + +  +DV+ YGI++ E+++ G+R +
Sbjct:  540 EEVIGAGEFGEVYKGRL---KLPSKREISVAIKTLKAGYSEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLR---GIAAGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQDDTSDPTYTSSLGGKIPVRWTAPEAIRYRKFTSASDVWSYGIVMWEVMSYGERPY 743          
BLAST of DY258284 vs. ExPASy Swiss-Prot
Match: Y9956_DICDI (Probable serine/threonine-protein kinase DDB_G0268876 OS=Dictyostelium discoideum GN=DDB_G0268876 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.885e-16
Identity = 66/221 (29.86%), Postives = 114/221 (51.58%), Query Frame = 3
Query:  129 QLGQLKRFSLRELQVATDGFSNKNILGRGGFGKVYKGRLADGKLVAVKRLKEERTSGGELQFQTEVKIISMAVHRNLLGLCGFCTTVTEKLLVYRYMANGSVASRLRERQSSLPPLDWPTRKKIALGSARGLSYLHEHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHITTAVHGTVGHIAPEYL-STGRSSEKTDVFGYGIMLLELITGQ 788
            ++  LK  S  +L++  +       +GRG  G V +G+   G  +AVK+  EE     E +F +E  I+S+  H N++   G      +  LV  Y + GS+ S +    +++ PL       +AL  A+G++YLH      IIHRD+K  N+L+D+++   + DFGL++++D +     T   GT  ++A E L      S++ DV+ +  +L E I+ Q
Sbjct:  746 EISVLKYISQSDLELTKE-------IGRGVSGVVKRGKWK-GYEIAVKQFNEEELGFSEREFHSEATIMSVLRHDNIVHCVGGSAQPGKMYLVCDYYSRGSLYSVIT---ANICPLSNARIVHLALQVAKGMNYLHSL---GIIHRDLKPGNLLIDQDWNIRISDFGLSRVVDNR----MTKTVGTPCYMAVEVLKGLTDYSQQADVYSFAFVLWECISRQ 948          
BLAST of DY258284 vs. ExPASy Swiss-Prot
Match: LIMK2_HUMAN (LIM domain kinase 2 OS=Homo sapiens GN=LIMK2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.885e-16
Identity = 69/215 (32.09%), Postives = 103/215 (47.91%), Query Frame = 3
Query:  201 ILGRGGFGKVYK-GRLADGKLVAVKRLK--EERTSGGELQFQTEVKIISMAVHRNLLGLCGFCTTVTEKLLVYRYMANGSVASRLRERQSSLPPLDWPTRKKIALGSARGLSYLHEHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKL---------MDYKDTHITT----------AVHGTVGHIAPEYLSTGRSSEKTDVFGYGIMLLELI 779
            +LG+G FG+  K    A GK++ +K L   +E T   +  F TEVK++    H N+L   G      +  L+  Y+  G++   LR    S+ P  W  + + A G A G++YLH  C   IIHRD+ + N L+  +   VV DFGL++L         M+   T   T           V G    +APE L+     E  D+F +GI+L E+I
Sbjct:  336 VLGKGFFGQAIKVTHKATGKVMVMKELIRCDEET---QKTFLTEVKVMRSLDHPNVLKFIGVLYKDKKLNLLTEYIEGGTLKDFLR----SMDPFPWQQKVRFAKGIASGMAYLHSMC---IIHRDLNSHNCLIKLDKTVVVADFGLSRLIVEERKRAPMEKATTKKRTLRKNDRKKRYTVVGNPYWMAPEMLNGKSYDETVDIFSFGIVLCEII 540          
BLAST of DY258284 vs. ExPASy Swiss-Prot
Match: GBPC_DICDI (Cyclic GMP-binding protein C OS=Dictyostelium discoideum GN=gbpC PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.885e-16
Identity = 81/277 (29.24%), Postives = 127/277 (45.85%), Query Frame = 3
Query:   69 RRTRPHEFFFDVPAEDDSELQLGQLKRFSLRELQVATDGFSNKNILGRGGFGKVYKGRLADGKLVAVKRLKEERTS------GGEL------------------QFQTEVKIISMAVHRNLLGLCGFCTTVTEKLLVYRYMANGSVASRLRERQSSLPPLDWPTRKKIALGSARGLSYLHEHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHITTAVHGTVGHI---------APEYLSTGRSSEKTDVFGYGIMLLELITGQRAFD 800
            R +  H    D+ A D S + +  + RF+L E+++      NK + GRG FG VY+       +   K L    T        GE+                  +F+ EV  +S   H N++ + GFC  +    +   Y+  GS+ S L    +S   + W  R +IA   A+G+ +LH H +P +IHRD+K+ NILL+   E   G   +A ++D+  +   TA++G    I          PE L+    SE +DV+ +GI+L EL T    FD
Sbjct:  847 RVSTSHRLKLDILAPDISMVDI-PIPRFNLSEVKI------NKEV-GRGAFGIVYEAEWMSEWIALKKLLLPSSTDTTNLNGNGEVMVYDDPDQLIEDRLRVFREFRHEVYYMSGLNHPNVMKISGFC--IQPLCMALEYVRYGSLYSLL---SNSSIEISWGLRLQIASEIAKGMQHLHSH-NPPVIHRDLKSPNILLNGITE---GQNSVATIIDFGTS---TALYGGAALIRCVDQPLWLGPEVLAGTAYSEPSDVYSFGIILWELYTRAHPFD 1103          
BLAST of DY258284 vs. ExPASy Swiss-Prot
Match: ROR1_DROME (Tyrosine-protein kinase transmembrane receptor Ror OS=Drosophila melanogaster GN=Ror PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.686e-16
Identity = 62/222 (27.93%), Postives = 113/222 (50.90%), Query Frame = 3
Query:  138 QLKRFSLRELQVATDGFSNKNILGRGGFGKVYKGRLADGK----LVAVKRLKEERTSGGELQFQTEVKIISMAVHRNLLGLCGFCTTVTEKLLVYRYMANGS----VASRLRERQSSLPPLDWPTRKKIALGSARGLSYLHEHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTH-ITTAVHGTVGHIAPEYLSTGRSSEKTDVFGYGIMLLEL 776
            ++  F+L++++   +       LG G FGKVYKG+L         VA+K LKE  +   +  F+ E+++IS   H+N++ + G         +++ YMANG     + S       SL  L++    +IAL  + G+ YL  H     +HRD+ A N L++E     + DFGL++ +   D + + +     V  +  E +  G+ + ++DV+ +G++L E+
Sbjct:  401 RINHFTLQDVEFLEE-------LGEGAFGKVYKGQLLQPNKTTITVAIKALKENASVKTQQDFKREIELISDLKHQNIVCILGVVLNKEPYCMLFEYMANGDLHEFLISNSPTEGKSLSQLEF---LQIALQISEGMQYLSAH---HYVHRDLAARNCLVNEGLVVKISDFGLSRDIYSSDYYRVQSKSLLPVRWMPSESILYGKFTTESDVWSFGVVLWEI 609          
BLAST of DY258284 vs. ExPASy Swiss-Prot
Match: M3K1_ARATH (Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana GN=MEKK1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 7.686e-16
Identity = 64/203 (31.53%), Postives = 97/203 (47.78%), Query Frame = 3
Query:  201 ILGRGGFGKVYKGRLADGKLVAVKR--LKEERTSGGEL--QFQTEVKIISMAVHRNLLGLCGFCTTVTEKLLVYRYMANGSVASRLRERQSSLPPLDWPTRKKIALGSARGLSYLHEHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHITTAVHGTVGHIAPEYLSTGRS---SEKTDVFGYGIMLLELITGQ 788
            +LGRG FG VY+G   DG   AVK   L ++ +   E   Q + E+K++S   H+N++   G     +   +    +  GS+    +  Q     +   TR+ +      GL YLH   D   IHRD+K ANIL+D      + DFGLAK+  + D     +  GT   +APE ++   S       D++  G  +LE+ TGQ
Sbjct:  338 LLGRGSFGSVYEGISGDGDFFAVKEVSLLDQGSQAQECIQQLEGEIKLLSQLQHQNIVRYRGTAKDGSNLYIFLELVTQGSLLKLYQRYQLRDSVVSLYTRQILD-----GLKYLH---DKGFIHRDIKCANILVDANGAVKLADFGLAKVSKFND---IKSCKGTPFWMAPEVINRKDSDGYGSPADIWSLGCTVLEMCTGQ 529          
BLAST of DY258284 vs. ExPASy Swiss-Prot
Match: FPS_FUJSV (Tyrosine-protein kinase transforming protein Fps OS=Fujinami sarcoma virus GN=V-FPS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.686e-16
Identity = 66/195 (33.85%), Postives = 97/195 (49.74%), Query Frame = 3
Query:  204 LGRGGFGKVYKGRL-ADGKLVAVKRLKEERTSGGELQFQTEVKIISMAVHRNLLGLCGFCTTVTEKLLVYRYMANGSVASRLRERQSSLPPLDWPTRKKIALGSARGLSYLH-EHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMD---YKDTHITTAVHGTVGHIAPEYLSTGRSSEKTDVFGYGIMLLE 773
            +GRG FG+V+ GRL AD   VAVK  +E      + +F  E +I+    H N++ L G CT      +V   +  G   S LR   S  P L      K+   +A G+ YL  +HC    IHRD+ A N L+ E+    + DFG+++  +   Y  T     +   V   APE L+ G  S ++DV+ +GI+L E
Sbjct:  618 IGRGNFGEVFSGRLRADNTPVAVKSCRETLPPELKAKFLQEARILKQCNHPNIVRLIGVCTQKQPIYIVMELVQGGDFLSFLR---SKGPRLKMKKLIKMMENAAAGMEYLESKHC----IHRDLAARNCLVTEKNTLKISDFGMSRQEEDGVYASTGGMKQI--PVKWTAPEALNYGWYSSESDVWSFGILLWE 803          
BLAST of DY258284 vs. ExPASy Swiss-Prot
Match: EPHA3_MOUSE (Ephrin type-A receptor 3 OS=Mus musculus GN=Epha3 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.686e-16
Identity = 67/224 (29.91%), Postives = 112/224 (50.00%), Query Frame = 3
Query:  201 ILGRGGFGKVYKGRLADGKL-------VAVKRLKEERTSGGELQFQTEVKIISMAVHRNLLGLCGFCTTVTEKLLVYRYMANGSVASRLRERQSSLPPLDWPTRKKIALGSARGLSYLHEHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLM--DYKDTHITTAVHGTVGHIAPEYLSTGRSSEKTDVFGYGIMLLELIT-GQRAFDLAMLANDENVMLLD 842
            ++G G FG+V  GRL   KL       VA+K LK   T      F  E  I+    H N++ L G  T    +++V  YM NGS+ S LR+  +    +      +   G A G+ YL    D   +HRD+ A NIL++      V DFGL++++  D +  + T      +   +PE +S  + +  +DV+ YGI+L E+++ G+R +  + ++N + +  +D
Sbjct:  626 VVGAGEFGEVCSGRL---KLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPEMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR---GIASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAMSYRKFTSASDVWSYGIVLWEVMSYGERPY--SQMSNQDVIKAVD 838          
BLAST of DY258284 vs. ExPASy Swiss-Prot
Match: BTKL_DROME (Tyrosine-protein kinase Btk29A OS=Drosophila melanogaster GN=Btk29A PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 7.686e-16
Identity = 61/193 (31.61%), Postives = 95/193 (49.22%), Query Frame = 3
Query:  204 LGRGGFGKVYKGRLADGKLVAVKRLKEERTSGGELQFQTEVKIISMAVHRNLLGLCGFCTTVTEKLLVYRYMANGSVASRLRERQSSLPPLDWPTRKKIALGSARGLSYLHEHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHITTAVHGTVGHIAPEYLSTGRSSEKTDVFGYGIMLLELIT 782
            LG G FG V +G+       AVK +KE   S  E  F  E K+++   H NL+ L G C+      +V  YM +GS+ + LR  + +L   +      + +  ++G++YL  H     IHRD+ A N L+  E    V DFGLA+ +       +      +    PE L+  R S K+DV+ YG+++ E+ T
Sbjct:  532 LGSGQFGVVRRGKWRGSIDTAVKMMKEGTMS--EDDFIEEAKVMTKLQHPNLVQLYGVCSKHRPIYIVTEYMKHGSLLNYLRRHEKTLIG-NMGLLLDMCIQVSKGMTYLERH---NYIHRDLAARNCLVGSENVVKVADFGLARYVLDDQYTSSGGTKFPIKWAPPEVLNYTRFSSKSDVWAYGVLMWEIFT 718          
BLAST of DY258284 vs. ExPASy Swiss-Prot
Match: STK6_HUMAN (Serine/threonine-protein kinase 6 OS=Homo sapiens GN=AURKA PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.004e-15
Identity = 64/235 (27.23%), Postives = 103/235 (43.83%), Query Frame = 3
Query:  105 PAEDDSELQLGQLKRFSLRELQVATDGFSNKNILGRGGFGKVYKGRLADGKLVAVKRL---KEERTSGGELQFQTEVKIISMAVHRNLLGLCGFCTTVTEKLLVYRYMANGSVASRLRERQSSLPPLDWPTRKKIALGSARGLSYLHEHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHITTAVHGTVGHIAPEYLSTGRSSEKTDVFGYGIMLLELITGQRAFD 800
            P  +  E    + K    ++ Q A + F     LG+G FG VY  R    K +   ++    +   +G E Q + EV+I S   H N+L L G+    T   L+  Y   G+V   L++    L   D           A  LSY H     ++IHRD+K  N+LL    E  + DFG +    +  +   T + GT+ ++ PE +      EK D++  G++  E + G+  F+
Sbjct:  106 PENNPEEELASKQKNEESKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK----LSKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSV---HAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 330          
The following BLAST results are available for this feature:
BLAST of DY258284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EPB1B_XENLA4.506e-1630.52Ephrin type-B receptor 1-B (Fragment) OS=Xenopus l... [more]
Y9956_DICDI5.885e-1629.86Probable serine/threonine-protein kinase DDB_G0268... [more]
LIMK2_HUMAN5.885e-1632.09LIM domain kinase 2 OS=Homo sapiens GN=LIMK2 PE=1 ... [more]
GBPC_DICDI5.885e-1629.24Cyclic GMP-binding protein C OS=Dictyostelium disc... [more]
ROR1_DROME7.686e-1627.93Tyrosine-protein kinase transmembrane receptor Ror... [more]
M3K1_ARATH7.686e-1631.53Mitogen-activated protein kinase kinase kinase 1 O... [more]
FPS_FUJSV7.686e-1633.85Tyrosine-protein kinase transforming protein Fps O... [more]
EPHA3_MOUSE7.686e-1629.91Ephrin type-A receptor 3 OS=Mus musculus GN=Epha3 ... [more]
BTKL_DROME7.686e-1631.61Tyrosine-protein kinase Btk29A OS=Drosophila melan... [more]
STK6_HUMAN1.004e-1527.23Serine/threonine-protein kinase 6 OS=Homo sapiens ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1AA05FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258284 ID=DY258284; Name=DY258284; organism=Citrus clementina; type=EST; length=1315bp
TTCCTGTGGGAGTTGCTCTTGGCGCTGCTTTACTTTTTGCTGTACCAGTT
ATTGGGTTTGCATATTGGCGGCGAACAAGACCACACGAATTTTTCTTTGA
CGTACCTGCTGAAGATGATTCAGAACTCCAGTTGGGACAGTTGAAAAGGT
TTTCTTTGCGAGAACTACAAGTTGCTACAGATGGTTTTAGCAACAAGAAC
ATCCTGGGAAGAGGTGGATTTGGCAAGGTGTATAAGGGACGCTTGGCTGA
TGGCAAATTGGTGGCAGTCAAAAGACTTAAGGAAGAGAGGACATCTGGAG
GGGAGTTGCAGTTTCAAACAGAAGTGAAGATAATCAGCATGGCTGTGCAT
CGGAATCTTCTGGGATTATGTGGGTTTTGCACGACTGTCACTGAGAAACT
GCTTGTTTATCGATACATGGCCAATGGAAGTGTTGCATCACGCCTAAGAG
AGCGGCAATCATCACTCCCGCCTCTTGACTGGCCAACTAGGAAGAAAATT
GCTTTAGGTTCAGCGAGGGGCCTTTCATATTTGCACGAGCATTGTGACCC
AAAGATCATTCATCGAGATGTCAAAGCTGCAAACATATTGTTGGATGAAG
AGTTTGAGGCTGTCGTTGGTGACTTTGGTTTAGCTAAACTAATGGACTAC
AAGGACACCCACATAACCACTGCTGTGCATGGCACCGTTGGGCATATAGC
CCCAGAGTATCTCTCCACAGGGAGGTCATCAGAGAAAACGGATGTTTTTG
GTTACGGTATCATGCTGTTAGAGCTAATTACCGGACAAAGGGCATTTGAT
CTTGCTATGCTTGCAAACGATGAAAATGTTATGCTCCTTGATAGAGTTAA
AGGATACCCTANGAGAGAAGAATTTTGATGTACTTGTTGATAAAGACCTG
CCGACTGATTATGAATGAAACTGAAGTGGGAAGAACTCCTCCCAAGTGGC
CCTCCCTTGCCCCCCAACCCCCCCCATCCCACGGGCCCAAAAAAGTCGAA
ATTTGCCAAAATGCTTGAAAGGGCATGGGCTGGGCAAAAAAAAAGGGGGC
AGGGGGGCCAACGGCCGGAGGGTATCCCCCCCCCAAGAAATCTTCATTTG
CCCCACCGGGCAAAAAATTTAAAAAAAAAAAAATTTACCCTCCCCCCCCA
CCCCTTTTTCAAAAATTGCTTTTTTCCCGCGGGCCGCCAAAAAAGAAAAA
GATTTTTTTCCTGTTGGGGCAAACAAAAAGAAAAAACCACCACAACCCCC
CCCTCTTCTCCCCCCTCCCCCCCCCTATTAATTAAGGGAGGGGGGGGTTT
GATTAAACCCCCCCC
back to top