DY258290

Overview
NameDY258290
Unique NameDY258290
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258290_ssr247 microsatellite DY258290_ssr247:247..258. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6814 contig Ccv1_Contig6814:936..2236. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRKY7_ARATH (Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.024e-17
Identity = 43/78 (55.13%), Postives = 51/78 (65.38%), Query Frame = 2
Query:  350 SRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTH-PGCPVRKHVERASHDLRAVITTYEGKHNH 580
            SR  R  RV   ++   DI  D + WRKYGQK +KG+P+PR YYKC+   GCP RKHVERA  D   +I TYEG HNH
Sbjct:  261 SRVKRVIRVPAVSSKMADIPSDEFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDAMMLIVTYEGDHNH 338          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK59_ARATH (Probable WRKY transcription factor 59 OS=Arabidopsis thaliana GN=WRKY59 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.997e-16
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 2
Query:  377 VVQTTSDID---ILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPA 592
            V +T S ID    LDDGY+WRKYG+K + G+P PR Y+KC+ P C V+K +ER +++   ++TTYEG+HNH  P+
Sbjct:   95 VFKTKSSIDEKVALDDGYKWRKYGKKPITGSPFPRHYHKCSSPDCNVKKKIERDTNNPDYILTTYEGRHNHPSPS 169          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRKY1_DICDI (Probable WRKY transcription factor protein 1 OS=Dictyostelium discoideum GN=wrky1 PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 2.608e-16
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 2
Query:  371 RVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSR 613
            ++V++T S ID LDDG+ WRKYGQK VKG+P P+SY+KC    CPV+K V +        I TY GKHNHD P +     R
Sbjct: 1098 KLVIETGSSIDHLDDGFFWRKYGQKSVKGSPFPKSYFKCAELTCPVKKQVIQQD---SKYINTYRGKHNHDPPESEAIEKR 1175          

HSP 2 Score: 77.0258 bits (188), Expect = 2.699e-13
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 2
Query:  401 DILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVP 589
            +I+ DGY+WRKYGQK VKG+ +PR YYKCT  GC VRK VER   D     T Y+G+H H  P
Sbjct:  811 NIVSDGYQWRKYGQKNVKGSLHPRHYYKCTFQGCNVRKQVERIG-DTNQNSTVYKGEHCHGFP 872          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK74_ARATH (Probable WRKY transcription factor 74 OS=Arabidopsis thaliana GN=WRKY74 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.449e-16
Identity = 40/77 (51.95%), Postives = 49/77 (63.64%), Query Frame = 2
Query:  353 RTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTH-PGCPVRKHVERASHDLRAVITTYEGKHNH 580
            R  R  +V   +    DI  D Y WRKYGQK +KG+P+PR YYKC+   GCP RKHVER   +   +I TYEG+HNH
Sbjct:  243 RVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVEETSMLIVTYEGEHNH 319          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK39_ARATH (Probable WRKY transcription factor 39 OS=Arabidopsis thaliana GN=WRKY39 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.810e-16
Identity = 40/77 (51.95%), Postives = 49/77 (63.64%), Query Frame = 2
Query:  353 RTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTH-PGCPVRKHVERASHDLRAVITTYEGKHNH 580
            R  R  +V   +    DI  D Y WRKYGQK +KG+P+PR YYKC+   GCP RKHVER   +   +I TYEG+HNH
Sbjct:  243 RVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCIDETSMLIVTYEGEHNH 319          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK21_ARATH (Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.294e-15
Identity = 41/77 (53.25%), Postives = 47/77 (61.04%), Query Frame = 2
Query:  353 RTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTH-PGCPVRKHVERASHDLRAVITTYEGKHNH 580
            R  R  RV   +    DI  D Y WRKYGQK +KG+P PR YYKC+   GCP RKHVER   D   +I TYE +HNH
Sbjct:  294 RVRRSIRVPAISNKVADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERCLEDPAMLIVTYEAEHNH 370          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRKY1_MAIZE (Protein WRKY1 OS=Zea mays PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.884e-15
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = 2
Query:  353 RTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTH-PGCPVRKHVERASHDLRAVITTYEGKHNHD 583
            R+++ P +   +    DI  D + WRKYGQK +KG+P+PR YYKC+   GCP RKHVER   D   +I TYEG HNH+
Sbjct:  316 RSIKVPAI---SNKVADIPADEFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVDDPSMLIVTYEGDHNHN 390          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK49_ARATH (Probable WRKY transcription factor 49 OS=Arabidopsis thaliana GN=WRKY49 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.884e-15
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 2
Query:  410 DDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNH 580
            DDGY+WRKYGQK +K +PNPRSYYKCT+P C  +K VER+  +    I TYEG H H
Sbjct:  114 DDGYKWRKYGQKSIKNSPNPRSYYKCTNPICNAKKQVERSIDESNTYIITYEGFHFH 170          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK40_ARATH (Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.884e-15
Identity = 33/64 (51.56%), Postives = 48/64 (75.00%), Query Frame = 2
Query:  404 ILDDGYRWRKYGQKVVKGNPNPRSYYKCT-HPGCPVRKHVERASHDLRAVITTYEGKHNHDVPA 592
            ++ DGY+WRKYGQKV + NP+PR+Y+KC   P C V+K V+R+  D   ++ TYEG+HNH +P+
Sbjct:  144 VVKDGYQWRKYGQKVTRDNPSPRAYFKCACAPSCSVKKKVQRSVEDQSVLVATYEGEHNHPMPS 207          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK18_ARATH (WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 6.424e-15
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 2
Query:  389 TSDIDI-LDDGYRWRKYGQKVVKGNPNPRSYYKCTH-PGCPVRKHVERASHDLRAVITTYEGKHNHDVPAA 595
            TSD  + + DG++WRKYGQKV + NP+PR+Y++C+  P CPV+K V+R++ D   ++ TYEG HNH  P A
Sbjct:  168 TSDTSLTVKDGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNHLGPNA 238          
The following BLAST results are available for this feature:
BLAST of DY258290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
WRKY7_ARATH4.024e-1755.13Probable WRKY transcription factor 7 OS=Arabidopsi... [more]
WRK59_ARATH1.997e-1650.67Probable WRKY transcription factor 59 OS=Arabidops... [more]
WRKY1_DICDI2.608e-1650.62Probable WRKY transcription factor protein 1 OS=Di... [more]
WRK74_ARATH4.449e-1651.95Probable WRKY transcription factor 74 OS=Arabidops... [more]
WRK39_ARATH5.810e-1651.95Probable WRKY transcription factor 39 OS=Arabidops... [more]
WRK21_ARATH1.294e-1553.25Probable WRKY transcription factor 21 OS=Arabidops... [more]
WRKY1_MAIZE2.884e-1550.00Protein WRKY1 OS=Zea mays PE=1 SV=1[more]
WRK49_ARATH2.884e-1561.40Probable WRKY transcription factor 49 OS=Arabidops... [more]
WRK40_ARATH2.884e-1551.56Probable WRKY transcription factor 40 OS=Arabidops... [more]
WRK18_ARATH6.424e-1550.70WRKY transcription factor 18 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AB06FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258290 ID=DY258290; Name=DY258290; organism=Citrus clementina; type=EST; length=1301bp
GCAGATAACTGAGATTGTTTACAAGGGCAGTCACAATCATCCCAAGCCTC
AATCTACAAGGAGATCATCGTCATCCTCGGTTAATTCTAATGCCATCCAA
GCATCTACTCAACATTCAAATGAAATACAAGATCAGTCATATGCTACACA
TGGAAGTGGACAGATGGATTCAGCTGCAACCCCAGAGAATTCTTCGATAT
CGGTGGGAGATGATGACGTTGATCAGGGTTCACAGAAGAGTAAATCAGGA
GGAGGAGGAGCTGGAGGAGGAGATGATTTTGATGAAGATGAACCTGAGGC
CAAAAGATGGAAAATTGAGGGTGAAAGTGAAGGCATTTCAGCTCCTGGAA
GTAGAACAGTGAGAGAACCAAGAGTTGTTGTTCAAACCACCAGTGACATT
GACATTCTAGATGATGGGTACAGATGGAGGAAATATGGCCAAAAAGTTGT
AAAGGGGAATCCAAATCCAAGGAGTTATTACAAGTGTACGCATCCAGGTT
GTCCAGTGAGAAAGCATGTTGAGAGAGCATCACACGATCTTAGAGCAGTG
ATCACAACCTATGAGGGAAAGCACAACCATGATGTTCCGGCAGCTCGCGG
CAGCGGCAGCAGGGCTCTGCCGGATAATAGCAGCAATAATAACCATAACA
GTAACAGCAATAGTAACAACAACGGGACACTGCCCGTAAGGGCATCGGCA
GTGGCTCATCATCCTAACAACAACTCGATTCTCAATCCTGTTCACAATCT
GAGGGTATCCTCATCTGAAGGCCAAGCACCCTATACCCTCGAAATGTTGC
AGGGCAACGGCAGCTTCCGGTTTCCCCGATATGGAAATGCTTTGAGGGTC
TATATGAATGAGGTTCAACAGCAAAAAAATGTGTTATCAAGAAGCAAGGA
AAAACCAAGGGATCATGACCCCTTCTTCCAATCCTTGCCTCTTTGAAACT
TGCCCAAAATTGAAAAGAATTTACCGTTACTACCCATTGGAAAGGGAATT
AAAATGAAAAAATTCAAAAGAAAAAAAAAAATTACCTTCCTTTGTTAATT
GCCTTCTGTTTTGTTGTGTTGTTTGGTTGGAATTTTCCACCCCATTTTTG
GAAAGGGAAAATCCACAAATTTGAAGGAAAAAATAAAAATAATAAAAACC
TTTCTTTTTTGTTTTTTTTTTTTTTATAAATTTTTTTTTTGGAGGCCCCC
CCTTTTGTTCAAAAACAACCCAAAAAGGGGCCCCTCCTTTTTTTTTTTTT
TTTGTTTTTTTTTTTTTTTTTTTTTGATATATATTTTTTATTCTTCTTTT
T
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