DY258292

Overview
NameDY258292
Unique NameDY258292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4B_XENLA (Cysteine protease ATG4B OS=Xenopus laevis GN=atg4b PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.195e-21
Identity = 67/209 (32.06%), Postives = 93/209 (44.50%), Query Frame = 3
Query:  285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP---------YAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPIXXXXXXXXXXEKVNPRYIPTLRVTLTFPKAL 884
            D +SR+  +YR+ F  IG +  TSD GWGCMLR  QM+ AQAL+   +GR WR   QKP   EY+ IL  F D + S +SIH + Q G   G   G W GP          A+   W ++A     +  +    +       SG E  + G        D+   C       A W P+           ++N  YI TL+     P++L
Sbjct:   45 DITSRLWFTYRRNFQAIGGTGPTSDTGWGCMLRCGQMIFAQALICRHVGRDWRWDKQKP-KGEYLNILTAFLDKKDSYYSIHQIAQMGVGEGKYIGQWYGPNTVAQVLRKLAVFDQWSSIAVHIAMDNTVVVDEIRRLCRAGSG-ESSDAGALSNGYTGDSDPSC-------AQWKPLVLLIPLRLGLSEINEAYIETLKHCFMVPQSL 244          

HSP 2 Score: 21.9422 bits (45), Expect = 3.195e-21
Identity = 7/10 (70.00%), Postives = 10/10 (100.00%), Query Frame = 2
Query:  869 LPQSLGIVGG 898
            +PQSLG++GG
Sbjct:  240 VPQSLGVIGG 249          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4A_PONAB (Cysteine protease ATG4A OS=Pongo abelii GN=ATG4A PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.865e-21
Identity = 64/216 (29.63%), Postives = 97/216 (44.91%), Query Frame = 3
Query:  285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP---------YAMCRSWEALARCQRAETGLGCQSLPMAIYV--VSGDEDGERGGAPVVCID---DASRHCSVFSKGQADWTPIXXXXXXXXXXEKVNPRYIPTLRVTLTFPKALAS 890
            D S+R+  +YR+ F PIG +  +SD GWGCMLR  QM++AQAL+   LGR W    QK   +EY  IL  F D +   +SIH + Q G   G + G W GP          A+   W +LA     +  +  + +     V  +  D  G+R    +   +     S +CS        W P+           ++NP Y+   +     P++L +
Sbjct:   48 DISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRVLPLGADTAGDRPPDSLTASNLSKGTSAYCSA-------WKPLLLIVPLRLGINQINPVYVDAFKECFKMPQSLGA 256          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4A_XENLA (Cysteine protease ATG4A OS=Xenopus laevis GN=atg4a PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.660e-21
Identity = 66/216 (30.56%), Postives = 98/216 (45.37%), Query Frame = 3
Query:  285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVC--------IDDASRHCSVFSKGQ------ADWTPIXXXXXXXXXXEKVNPRYIPTLRVTLTFPKALAS 890
            D  SR+  +YRK F PIG +  +SD GWGCMLR  QM++AQAL+   LGR WR    K    EY +IL  F D +   +SIH + Q G   G + G W GP  + +  + LA      +        +A+Y VS D          +C        +  A+ H S +S+ +      + W P+            +NP Y+   +     P++L +
Sbjct:   50 DIVSRLWFTYRKKFSPIGGTGPSSDTGWGCMLRCGQMMLAQALVCQHLGRDWRWEKHKNHPEEYQQILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDEWNS--------LAVY-VSMDNTVVVEDIKTMCKYQPQSCSMAQAASHQSTWSRCRDTSGHCSGWRPLLLVVPLRLGINHINPVYVDAFKACFKMPQSLGA 256          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4B_HUMAN (Cysteine protease ATG4B OS=Homo sapiens GN=ATG4B PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.000e-20
Identity = 67/217 (30.88%), Postives = 98/217 (45.16%), Query Frame = 3
Query:  285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYV-----VSGDEDGERGGAPVVCID------DASRHCSVFSKG------QADWTPIXXXXXXXXXXEKVNPRYIPTLRVTLTFPKAL 884
            D +SR+  +YRK F  IG +  TSD GWGCMLR  QM+ AQAL+   LGR WR   +K     Y  +L+ F D + S +SIH + Q G   G + G W GP  + +  + LA      +        +A+++     V  +E        V C        D+ RHC+ F  G       + W P+            +N  Y+ TL+     P++L
Sbjct:   45 DVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSS--------LAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYVETLKHCFMMPQSL 253          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4A_BOVIN (Cysteine protease ATG4A OS=Bos taurus GN=ATG4A PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.706e-20
Identity = 65/213 (30.52%), Postives = 96/213 (45.07%), Query Frame = 3
Query:  285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP---------YAMCRSWEALARCQRAETGLGCQSLPMAIYV--VSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPIXXXXXXXXXXEKVNPRYIPTLRVTLTFPKALAS 890
            D S+R+  +YR+ F PIG +  +SD GWGCMLR  QM++AQAL+   LGR W    QK   +EY  IL  F D +   +SIH + Q G   G + G W GP          A+   W +LA     +  +  + +        +S D   ER   P+  +  AS      S     W P+           ++NP Y+   +     P++L +
Sbjct:   48 DISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWNWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRTLSLSADTPAER---PLESL-TASNQSKGPSACCTAWKPLLLIVPLRLGINQINPVYVDAFKECFKMPQSLGA 256          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4_PHANO (Probable cysteine protease ATG4 OS=Phaeosphaeria nodorum GN=ATG4 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.229e-20
Identity = 77/225 (34.22%), Postives = 104/225 (46.22%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIGDSK---------------------ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAY-GLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPIXXXXXXXXXXEKVNPRYIPTLRVTLTFPKAL 884
            F  DF SR+ ++YR GF PI  S+                      TSD G+GCM+RS Q ++A AL   RLGR WR   +   D+++ EIL LF D   +PFSIH  ++ G A  G   G W GP A  R  + LA   R E GL        +Y VSGD      GA V   +D  +  +V   G   W P           +K+ P Y   L+ +L  P+++
Sbjct:   96 FLDDFESRVWMTYRSGFSPIQKSQDPKATSAMSFRVRMQNLASPGFTSDAGFGCMIRSGQCILANALQILRLGRDWRWQ-ENHADKDHAEILSLFADDPQAPFSIHRFVEHGAAVCGKYPGEWFGPSAAARCIQDLANKHR-EAGL-------KVY-VSGD------GADV--YEDKLKQVAVDEDGL--WQPTLILVGTRLGIDKITPVYWEALKASLQIPQSI 300          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4B_MOUSE (Cysteine protease ATG4B OS=Mus musculus GN=Atg4b PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 2.911e-20
Identity = 66/217 (30.41%), Postives = 99/217 (45.62%), Query Frame = 3
Query:  285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYV-----VSGDEDGERGGAPVVCI------DDASRHCSVFSKG------QADWTPIXXXXXXXXXXEKVNPRYIPTLRVTLTFPKAL 884
            D +SR+  +YR+ F  IG +  TSD GWGCMLR  QM+ AQAL+   LGR WR   +K     Y  +L+ F D + S +SIH + Q G   G + G W GP  + +  + LA      +        +A+++     V  +E      A + C        D+ RHC+ F  G       + W P+            +N  Y+ TL+     P++L
Sbjct:   45 DVASRLWFTYRRNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFNVLNAFLDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSS--------LAVHIAMDNTVVMEEIRRLCRANLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDINEAYVETLKHCFMMPQSL 253          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4B_DANRE (Cysteine protease ATG4B OS=Danio rerio GN=atg4b PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 3.801e-20
Identity = 66/214 (30.84%), Postives = 96/214 (44.86%), Query Frame = 3
Query:  285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP---------YAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGA-----PVVCIDDASRHCSVFSKGQADWTPIXXXXXXXXXXEKVNPRYIPTLRVTLTFPKAL 884
            D +SR+  +YRK F PIG +  TSD GWGCMLR  QM++ +AL+   LGR W+    +    EYV IL+ F D + S +SIH + Q G   G + G W GP          A+  SW  LA     +  +  + +     +     D +RG       P     D    C++  +  A W P+            +N  YI  L+     P++L
Sbjct:   45 DVTSRLWFTYRKNFQPIGGTGPTSDTGWGCMLRCGQMILGEALICRHLGRDWKWSPGQRQRPEYVSILNAFIDKKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDSWSRLAVHVAMDNTVVIEEIKR---LCMPWLDFDRGACAVSEEPREMNGDLEGACALAEEETALWKPLVLLIPLRLGLSDINEAYIEPLKQCFMMPQSL 255          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4A_CHICK (Cysteine protease ATG4A OS=Gallus gallus GN=ATG4A PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.445e-19
Identity = 48/112 (42.86%), Postives = 65/112 (58.04%), Query Frame = 3
Query:  285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALA 620
            D S+R+  +YR+ F PIG +  +SD GWGCMLR  QM++AQAL+   LGR W+    K    EY  ILH F D +   +SIH + Q G   G + G W GP  + +  + LA
Sbjct:   31 DVSARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWQWEKHKKQPEEYHRILHCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLA 142          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4B_CHICK (Cysteine protease ATG4B OS=Gallus gallus GN=ATG4B PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.724e-18
Identity = 48/112 (42.86%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALA 620
            D +SR+  +YRK F  IG +  TSD GWGCMLR  QM+ AQAL+   LGR WR    K     Y  +L+ F D + S +SIH + Q G   G + G W GP  + +  + LA
Sbjct:   44 DVTSRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWIKGKRQTDNYFSVLNAFIDKKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLA 155          
The following BLAST results are available for this feature:
BLAST of DY258292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
ATG4B_XENLA3.195e-2132.06Cysteine protease ATG4B OS=Xenopus laevis GN=atg4b... [more]
ATG4A_PONAB5.865e-2129.63Cysteine protease ATG4A OS=Pongo abelii GN=ATG4A P... [more]
ATG4A_XENLA7.660e-2130.56Cysteine protease ATG4A OS=Xenopus laevis GN=atg4a... [more]
ATG4B_HUMAN1.000e-2030.88Cysteine protease ATG4B OS=Homo sapiens GN=ATG4B P... [more]
ATG4A_BOVIN1.706e-2030.52Cysteine protease ATG4A OS=Bos taurus GN=ATG4A PE=... [more]
ATG4_PHANO2.229e-2034.22Probable cysteine protease ATG4 OS=Phaeosphaeria n... [more]
ATG4B_MOUSE2.911e-2030.41Cysteine protease ATG4B OS=Mus musculus GN=Atg4b P... [more]
ATG4B_DANRE3.801e-2030.84Cysteine protease ATG4B OS=Danio rerio GN=atg4b PE... [more]
ATG4A_CHICK1.445e-1942.86Cysteine protease ATG4A OS=Gallus gallus GN=ATG4A ... [more]
ATG4B_CHICK2.724e-1842.86Cysteine protease ATG4B OS=Gallus gallus GN=ATG4B ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AB10FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258292 ID=DY258292; Name=DY258292; organism=Citrus clementina; type=EST; length=1280bp
GCTTGTTTAATTCTGCTTTCTCAGTCTTTGAAACGTATAGTGAGTCGTCA
GCTAGTGAAAAGAAGGCAGTTCATAATAAAAGTAATGGGTGGACAGCAGC
TGTGAAGAGACTAGTGACTGCTGGCTCAATGAGGAGAATACATGAACGTG
TACTAGGGCCGAGCAGGACTGGAATTTCTAGCTCAACCAGTGACATATGG
CTTCTTGGTGTGTGCCATAAAATTGCACAGGATGAGGCCTTGGGTGATGC
AGCTGGTAACAATGGATTAGCGGAATTCAATCAAGATTTTTCATCAAGAA
TTCTGATTTCATATCGTAAAGGTTTTGATCCTATTGGTGATTCAAAGATT
ACAAGTGATGTAGGCTGGGGTTGCATGCTTCGAAGTAGTCAGATGCTTGT
TGCACAGGCATTGCTTTTTCATCGATTGGGAAGACCTTGGAGAAAACCTT
TGCAGAAGCCATTTGATCGTGAATATGTTGAGATCTTGCACCTTTTTGGT
GATTCTGAGACATCACCTTTCTCCATTCACAATCTTCTTCAAGCTGGAAA
GGCTTATGGCCTTGCAGCTGGATCATGGGTTGGCCCATATGCCATGTGTC
GCTCATGGGAAGCTCTAGCTCGTTGTCAGAGAGCGGAAACTGGCCTTGGA
TGCCAGTCACTTCCAATGGCTATTTATGTTGTTTCAGGTGATGAAGATGG
GGAGCGAGGTGGAGCTCCAGTTGTGTGTATTGACGATGCATCTAGACATT
GTTCTGTGTTTTCAAAAGGTCAAGCTGACTGGACACCAATTCTTCTGCTT
GTTCCCTTGGNTCTCGGACTTGAGAAAGTAAATCCCAGGTACATTCCAAC
CTTGCGGGTGACACTCACCTTCCCCAAAGCCTTGGCATCGTGGGTGGAAA
CCTGGTGCCTCAACTACATTGTGGTGTGCCAGAGAAAGCGCTATCTACCT
GATCCCATGAACCTCAGCTGGTTATAATATTGGAAAGATGTCCAAAAGCC
GACCCTCCCCAATCAAACCAATGTCCTAGGCCCCCTCCCCTGGATTAATT
GATCCCCCCTGGGCAAAAGATTTCATTGTGAGGAAAAAAATAAATTTAAA
TATTTTTTGGCCCCGGGCCCCCCCCCAACCAAAAAAAACAAAGGGGGGCC
CCCCTTTTTTCCCCGGGGACCCCCACCCCCAAAAAAACCCCCCCCCCCCC
CCCCACGGGGTTGTTGTTGGGGGGGAAACAAGGGGGGGGGGGGGGTCCCC
CCAAAAGAAAAGAATTTTCTCCTTTCGTGG
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