DY258292

Overview
NameDY258292
Unique NameDY258292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4D_HUMAN (Cysteine protease ATG4D OS=Homo sapiens GN=ATG4D PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.265e-15
Identity = 60/231 (25.97%), Postives = 93/231 (40.26%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPW----------------------------------RKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPIXXXXXXXXXXEKVNPRYIPTLRVTL 866
            F +DF SR+ ++YR+ F P+    +TSD GWGCMLRS QM++AQ LL H L R W                                  +   +   +R + +I+  F D   +PF +H L++ G++ G  AG W GP         +A   R           + +YV       +   A +V   D +          A+W  +          E +NP Y+P ++  L
Sbjct:  112 FQRDFVSRLWLTYRRDFPPLPGGCLTSDCGWGCMLRSGQMMLAQGLLLHFLPRDWTWAEGMGLGPPELSGSASPSRYHGPARWMPPRWAQGAPELEQERRHRQIVSWFADHPRAPFGLHRLVELGQSSGKKAGDWYGP-------SLVAHILRKAVESCSDVTRLVVYVSQDCTVYKADVARLVARPDPT----------AEWKSVVILVPVRLGGETLNPVYVPCVKELL 325          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4_CRYPA (Probable cysteine protease ATG4 OS=Cryphonectria parasitica GN=ATG4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.159e-15
Identity = 51/138 (36.96%), Postives = 68/138 (49.28%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIGDSK----------------------ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGK-AYGLAAGSWVGPYAMCRSWEALA 620
            F  DF SR+ ++YR  F+PI  S                        +SD GWGCM+RS Q L+A  L+  +LGR WR+       R+  EIL  F D   +P+S+HN ++ G  A G   G W GP A  R  +ALA
Sbjct:  124 FLDDFESRVWMTYRSEFEPISKSNDPRASAALSFAMRLRTLADQGGFSSDTGWGCMIRSGQSLLANTLVICQLGRDWRRGKAA---RQEREILARFADDPRAPYSLHNFVRHGAVACGKFPGEWFGPSATARCIQALA 258          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4_NEUCR (Probable cysteine protease atg-4 OS=Neurospora crassa GN=atg-4 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.819e-15
Identity = 52/139 (37.41%), Postives = 70/139 (50.36%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGF-------DPIGDSKIT----------------SDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWEALA 620
            F  DF SRI ++YR  F       DP   S ++                SD GWGCM+RS Q L+A A+L  RLGR WR+      ++   +I+ LF D   +P+S+HN ++ G  A G   G W GP A  R  +ALA
Sbjct:  171 FLDDFESRIWMTYRTDFALIPRSSDPQASSALSFAMRIKTTFSDLTGFSSDTGWGCMIRSGQSLLANAILIARLGREWRRGTDLDAEK---DIIALFADDPRAPYSLHNFVKYGATACGKYPGEWFGPSATARCIQALA 306          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4_ASPCL (Probable cysteine protease atg4 OS=Aspergillus clavatus GN=atg4 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.525e-15
Identity = 67/227 (29.52%), Postives = 94/227 (41.41%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIG----------------------DSK-ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAY-GLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPIXXXXXXXXXXEKVNPRYIPTLRVTLTFPKAL 884
            F  D  SRI I+YR  F PI                       DS+  TSD GWGCM+RS Q L+A A+L   LGR WR+  +     +  ++LH F D   +PFSIH  +Q G  +     G W GP A  R  +AL     A+ G    S  + +Y+     D        +  D  +R   +      D+ P           + V P Y   L+  L  P+++
Sbjct:   76 FLDDVESRIWITYRSNFTPIPKPPNQEANPAMTLTVHLRSQLMDSQGFTSDTGWGCMIRSGQSLLANAMLILLLGRDWRRGTEA---GKEAQLLHQFADHPEAPFSIHRFVQHGAEFCNKYPGEWFGPSATARCIQALV----AQQG----SSELRVYITDDTAD--------IYEDKFAR---IAQAEHGDFIPTLILVGTRLGIDHVTPAYWDALKEALQLPQSV 280          

HSP 2 Score: 21.1718 bits (43), Expect = 3.525e-15
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 2
Query:  869 LPQSLGIVGG 898
            LPQS+GI GG
Sbjct:  276 LPQSVGIAGG 285          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4C_XENLA (Cysteine protease ATG4C OS=Xenopus laevis GN=atg4c PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.202e-15
Identity = 52/151 (34.44%), Postives = 65/151 (43.05%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPW------------------------------------------RKPLQKPFDREYVEILH-----LFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP 587
            F +DF SRI ++YRK F  I  S  T+D GWGC LR+ QML+AQ LL H LGR W                                          ++PLQ    + Y E LH      F D   + F +H L++ GK  G  AG W GP
Sbjct:   80 FRKDFISRIWLTYRKEFPQIESSSWTTDCGWGCTLRTGQMLLAQGLLVHFLGRDWTWTEALDIFCSESDFWTANTARKLDPSLEKSSPENEEYVSLGKQPLQNSEKKRYSEDLHRKIISWFADYPLAYFGLHQLVKLGKNSGKVAGDWYGP 230          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4_PODAN (Probable cysteine protease ATG4 OS=Podospora anserina GN=ATG4 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.071e-14
Identity = 52/138 (37.68%), Postives = 66/138 (47.83%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPI----------------------GDSK-ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWEAL 617
            F  DF SRI ++YR GF+ I                      GD    +SD GWGCM+RS Q L+A A+L  R GR WR+      +R   EI+ LF D   +P+SI N +  G  A G   G W GP A  R   +L
Sbjct:  173 FLDDFESRIWMTYRTGFEVIPRSTDPKAAAALSFTMRFKTSFGDQTGFSSDTGWGCMIRSGQSLLANAMLISRAGRAWRRTTNPDIER---EIVCLFADDPRAPYSIQNFVNHGAAACGKYPGEWFGPSATARCIHSL 307          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4_ASPOR (Probable cysteine protease atg4 OS=Aspergillus oryzae GN=atg4 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.862e-14
Identity = 66/227 (29.07%), Postives = 90/227 (39.65%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPI-----------------------GDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPIXXXXXXXXXXEKVNPRYIPTLRVTLTFPKAL 884
            F  DF S+I ++YR  F PI                            TSD GWGCM+RS Q L+A A+L   LGR WR+  +     E   +L LF D   +P SIH  ++ G ++ G   G W GP A  R  EAL+          C ++   +YV +   D        V  D   R   V   G     P           + V P Y   L+  L  P+++
Sbjct:   81 FVSDFESKIWMTYRSDFPPIPRLDNDEANHPMTLTVRIRTQLMDPQGFTSDTGWGCMIRSGQSLLANAMLTLCLGRDWRRGDKA---EEEARLLSLFADHPDAPLSIHRFVKYGAESCGKHPGEWFGPSATARCIEALS--------AQCGNIAPRVYVTNDTSD--------VYEDSFLR---VARSGSGSIQPTLILLGTRLGIDNVTPVYWDGLKAVLQLPQSV 285          

HSP 2 Score: 21.1718 bits (43), Expect = 2.862e-14
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 2
Query:  869 LPQSLGIVGG 898
            LPQS+GI GG
Sbjct:  281 LPQSVGIAGG 290          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4C_MOUSE (Cysteine protease ATG4C OS=Mus musculus GN=Atg4c PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.944e-14
Identity = 52/156 (33.33%), Postives = 68/156 (43.59%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKP----------------LQKPF----------DRE--------------------------YVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP 587
            F +DF SRI ++YR+ F  I  S +T+D GWGC LR+ QML+AQ L+ H LGR W  P                  K F          DRE                          + +I+  FGDS  + F +H L++ GK  G  AG W GP
Sbjct:   79 FRKDFISRIWLTYREEFPQIEASALTTDCGWGCTLRTGQMLLAQGLILHFLGRAWTWPDALHIENADSDSWTSNTVKKFTASFEASLSGDRELRTPAVSLKETSGKCPDDHTVRNEAYHRKIISWFGDSPVAVFGLHRLIEFGKKSGKKAGDWYGP 234          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4_PENCW (Probable cysteine protease atg4 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=atg4 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.184e-13
Identity = 61/227 (26.87%), Postives = 90/227 (39.65%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIGDSK-----------------------ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPIXXXXXXXXXXEKVNPRYIPTLRVTLTFPKAL 884
            F  DF SRI I+YR  F PI  +K                        TSD GWGCM+RS Q L+A       LGR WR+  +     E  +++ +F D   +PFSIH  +  G ++ G   G W GP A  +  + L+               + +Y+ +   D           +D   H +    G+    P           + V P Y   LR  LT+P+++
Sbjct:   71 FLSDFGSRIWITYRSNFTPIPRTKTPEATSSMTLGVRLRSQLMDPQGFTSDTGWGCMIRSGQSLLANTFSVLLLGRDWRRGEKV---EEESKLISMFADHPEAPFSIHRFVNRGAESCGKYPGEWFGPSATAKCIQLLSTQSEVP--------QLRVYLTNDTSD---------VYEDKFAHVAHDESGRIQ--PTLILIGTRLGIDNVTPAYWDGLRAALTYPQSV 275          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4_EMENI (Cysteine protease atg4 OS=Emericella nidulans GN=atg4 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.639e-13
Identity = 49/139 (35.25%), Postives = 66/139 (47.48%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIGDSK-----------------------ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAY-GLAAGSWVGPYAMCRSWEALA 620
            F  DF S+I ++YR  F PI                            TSD GWGCM+RS Q L+A ++    LGR WR+  +     E  ++L LF DS  +PFSIH+ ++ G  + G   G W GP A  R  + LA
Sbjct:   50 FLLDFESKIWMTYRSNFPPIPKDAGQEGSLSLTLGVRLRSQLIDAQGFTSDTGWGCMIRSGQSLLANSMAILLLGRDWRRGERL---EEEGKLLSLFADSPHAPFSIHSFVKHGADFCGKHPGEWFGPTATARCIQGLA 185          
The following BLAST results are available for this feature:
BLAST of DY258292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
ATG4D_HUMAN1.265e-1525.97Cysteine protease ATG4D OS=Homo sapiens GN=ATG4D P... [more]
ATG4_CRYPA2.159e-1536.96Probable cysteine protease ATG4 OS=Cryphonectria p... [more]
ATG4_NEUCR2.819e-1537.41Probable cysteine protease atg-4 OS=Neurospora cra... [more]
ATG4_ASPCL3.525e-1529.52Probable cysteine protease atg4 OS=Aspergillus cla... [more]
ATG4C_XENLA8.202e-1534.44Cysteine protease ATG4C OS=Xenopus laevis GN=atg4c... [more]
ATG4_PODAN1.071e-1437.68Probable cysteine protease ATG4 OS=Podospora anser... [more]
ATG4_ASPOR2.862e-1429.07Probable cysteine protease atg4 OS=Aspergillus ory... [more]
ATG4C_MOUSE6.944e-1433.33Cysteine protease ATG4C OS=Mus musculus GN=Atg4c P... [more]
ATG4_PENCW1.184e-1326.87Probable cysteine protease atg4 OS=Penicillium chr... [more]
ATG4_EMENI2.639e-1335.25Cysteine protease atg4 OS=Emericella nidulans GN=a... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AB10FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258292 ID=DY258292; Name=DY258292; organism=Citrus clementina; type=EST; length=1280bp
GCTTGTTTAATTCTGCTTTCTCAGTCTTTGAAACGTATAGTGAGTCGTCA
GCTAGTGAAAAGAAGGCAGTTCATAATAAAAGTAATGGGTGGACAGCAGC
TGTGAAGAGACTAGTGACTGCTGGCTCAATGAGGAGAATACATGAACGTG
TACTAGGGCCGAGCAGGACTGGAATTTCTAGCTCAACCAGTGACATATGG
CTTCTTGGTGTGTGCCATAAAATTGCACAGGATGAGGCCTTGGGTGATGC
AGCTGGTAACAATGGATTAGCGGAATTCAATCAAGATTTTTCATCAAGAA
TTCTGATTTCATATCGTAAAGGTTTTGATCCTATTGGTGATTCAAAGATT
ACAAGTGATGTAGGCTGGGGTTGCATGCTTCGAAGTAGTCAGATGCTTGT
TGCACAGGCATTGCTTTTTCATCGATTGGGAAGACCTTGGAGAAAACCTT
TGCAGAAGCCATTTGATCGTGAATATGTTGAGATCTTGCACCTTTTTGGT
GATTCTGAGACATCACCTTTCTCCATTCACAATCTTCTTCAAGCTGGAAA
GGCTTATGGCCTTGCAGCTGGATCATGGGTTGGCCCATATGCCATGTGTC
GCTCATGGGAAGCTCTAGCTCGTTGTCAGAGAGCGGAAACTGGCCTTGGA
TGCCAGTCACTTCCAATGGCTATTTATGTTGTTTCAGGTGATGAAGATGG
GGAGCGAGGTGGAGCTCCAGTTGTGTGTATTGACGATGCATCTAGACATT
GTTCTGTGTTTTCAAAAGGTCAAGCTGACTGGACACCAATTCTTCTGCTT
GTTCCCTTGGNTCTCGGACTTGAGAAAGTAAATCCCAGGTACATTCCAAC
CTTGCGGGTGACACTCACCTTCCCCAAAGCCTTGGCATCGTGGGTGGAAA
CCTGGTGCCTCAACTACATTGTGGTGTGCCAGAGAAAGCGCTATCTACCT
GATCCCATGAACCTCAGCTGGTTATAATATTGGAAAGATGTCCAAAAGCC
GACCCTCCCCAATCAAACCAATGTCCTAGGCCCCCTCCCCTGGATTAATT
GATCCCCCCTGGGCAAAAGATTTCATTGTGAGGAAAAAAATAAATTTAAA
TATTTTTTGGCCCCGGGCCCCCCCCCAACCAAAAAAAACAAAGGGGGGCC
CCCCTTTTTTCCCCGGGGACCCCCACCCCCAAAAAAACCCCCCCCCCCCC
CCCCACGGGGTTGTTGTTGGGGGGGAAACAAGGGGGGGGGGGGGGTCCCC
CCAAAAGAAAAGAATTTTCTCCTTTCGTGG
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