DY258302

Overview
NameDY258302
Unique NameDY258302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1289
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: SIRK_ARATH (Senescence-induced receptor-like serine/threonine-protein kinase OS=Arabidopsis thaliana GN=SIRK PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.462e-11
Identity = 50/179 (27.93%), Postives = 91/179 (50.84%), Query Frame = 2
Query:  389 VYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQPMKWAMRLRVALYLAQALEYCSS--KGRALYHDLHAYRILFDKDGNPRLSSFGPYEN-SRDGKS-----YSTNLAFTPPEYMRTGKVTPESVVYSFGTLLL 901
            VY G ++ ++ VAVK  S+ +    ++F  E   +  +    L +L+G C E +  +L+ E+M NE L  +L    +  + W  RL+++L  AQ LEY  +  K   ++ D+    IL ++    +++ FG   + S +G        + ++ +  PEY  T ++  +S VYS G +LL
Sbjct:  588 VYHGVINGEQ-VAVKVLSEESAQGYKEFRAEVDLLMRVHHTNLTSLVGYCNEINHMVLIYEYMANENLGDYLAGKRSFILSWEERLKISLDAAQGLEYLHNGCKPPIVHRDVKPTNILLNEKLQAKMADFGLSRSFSVEGSGQISTVVAGSIGYLDPEYYSTRQMNEKSDVYSLGVVLL 765          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: RPKL_ARATH (Receptor protein kinase-like protein At4g34220 OS=Arabidopsis thaliana GN=At4g34220 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.462e-11
Identity = 68/261 (26.05%), Postives = 119/261 (45.59%), Query Frame = 2
Query:  239 ESSDLDSGGKNDRQTVPSFTEFSLQQLRTATCDFSPDNIVSEHGEK------------------SPNIVYKGKLDNDRWVAVKRFSKFNWPDSR--QFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQ-------------PMKWAMRLRVALYLAQALEYCSSKGRALYHDLHAYRILFDKDGNPRLSSFG-------PYENSRDGKSYSTNLAFTPPEYMRTGKVTPESVVYSFGTLLL 901
            E+S  +S  +N +QTV +FT     QL+ +    S   +V+  GE                      IVYK  L+N    AV+R    +   ++  +F  E +A+  LR   L  + G C+  DE+LL+++++PN +L    F   T+             P+ +  RL++A  +A+ L Y + K + ++ ++    IL + +  P ++  G         E+   G + S+   + PPE+  + K  P+  VYSFG +LL
Sbjct:  422 ETSTSESDVEN-QQTVQAFTRTDGGQLKQS----SQTQLVTVDGETRLDLDTLLKASAYILGTTGTGIVYKAVLENGTAFAVRRIETESCAAAKPKEFEREVRAIAKLRHPNLVRIRGFCWGDDEKLLISDYVPNGSLL--CFFTATKASSSSSSSSSLQNPLTFEARLKIARGMARGLSYINEK-KQVHGNIKPNNILLNAENEPIITDLGLDRLMTPARESHTTGPTSSS--PYQPPEWSTSLKPNPKWDVYSFGVILL 672          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: RPK1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RPK1 OS=Arabidopsis thaliana GN=RPK1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.462e-11
Identity = 59/201 (29.35%), Postives = 90/201 (44.78%), Query Frame = 2
Query:  326 ATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQPMKWAMRLRVALYLAQALEY----CSSKGRALYHDLHAYRILFDKDGNPRLSSFGPYENSRDGKSYST-----NLAFTPPEYMRTGKVTPESVVYSFGTLLL 901
            AT  FS  N +   G  S    YK ++      AVKR S   +   +QF  E  A+  +R   L  LIG      E  L+  ++    L   +       ++W +  ++AL +A+AL Y    CS K   L+ D+    IL D + N  LS FG  +     +S+ T        +  PEY  T +V+ ++ VYS+G +LL
Sbjct:  257 ATGYFSNSNCIGHGGFGS---TYKAEVSPTNVFAVKRLSVGRFQGDQQFHAEISALEMVRHPNLVMLIGYHASETEMFLIYNYLSGGNLQDFIKERSKAAIEWKVLHKIALDVARALSYLHEQCSPK--VLHRDIKPSNILLDNNYNAYLSDFGLSKLLGTSQSHVTTGVAGTFGYVAPEYAMTCRVSEKADVYSYGIVLL 452          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: PUB35_ARATH (U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.462e-11
Identity = 68/221 (30.77%), Postives = 103/221 (46.61%), Query Frame = 2
Query:  293 FTEFSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQP-MKWAMRLRVALYLAQALEYC-SSKGRALYH-DLHAYRILFD-----KDGNPRLSS----------FGPYENSRDGKSYSTNLAFTPPEYMRTGKVTPESVVYSFGTLLL 901
            +  F+ +++  AT  FS +  +   G  +   VYK  L +   V VK         S+QF +E + +  +R   L  L+G C E  +  LV E+M N +L   LF     P + W  R R+A  +A AL +   SK + + H DL    IL D     K G+  LS+          F  Y+ +    S    L +  PEY RTG+++ +S +YSFG +LL
Sbjct:  465 YQHFAWEEIMAATSSFSEELKI---GMGAYGAVYKCNLHHTTAV-VKVLQSAENQLSKQFQQELEILSKIRHPHLVLLLGACPE--QGALVYEYMENGSLEDRLFQVNNSPPLPWFERFRIAWEVAAALVFLHKSKPKPIIHRDLKPANILLDHNFVSKVGDVGLSTMVQVDPLSTKFTIYKQT----SPVGTLCYIDPEYQRTGRISSKSDIYSFGMILL 675          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: Y1719_ARATH (Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.494e-11
Identity = 64/213 (30.05%), Postives = 93/213 (43.66%), Query Frame = 2
Query:  299 EFSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWE--TQPMKWAMRLRVALYLAQALEYC--SSKGRALYHDLHAYRILFDKDGNPRLSSFG--PYENSRDGKSYSTN------LAFTPPEYMRTGKVTPESVVYSFGTLLL 901
            +  L  L  AT +FS  NI          + YK  L +   +AVKR S   + + +QF  E   +G LR   L  L+G C   DERLLV + M N TL   L +       + W  R  + +  A+ L +     +   L+  + +  IL D D + R++ +G      SRD    S N      L +  PEY  T   + +  VY FG +LL
Sbjct:  288 KIKLGDLMAATNNFSSGNI---DVSSRTGVSYKADLPDGSALAVKRLSACGFGE-KQFRSEMNKLGELRHPNLVPLLGYCVVEDERLLVYKHMVNGTLFSQLHNGGLCDAVLDWPTRRAIGVGAAKGLAWLHHGCQPPYLHQFISSNVILLDDDFDARITDYGLAKLVGSRDSNDSSFNNGDLGELGYVAPEYSSTMVASLKGDVYGFGIVLL 496          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: Y1755_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07550 OS=Arabidopsis thaliana GN=At1g07550 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.257e-11
Identity = 50/186 (26.88%), Postives = 92/186 (49.46%), Query Frame = 2
Query:  368 GEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWE-TQPMKWAMRLRVALYLAQALEYCSS--KGRALYHDLHAYRILFDKDGNPRLSSFGPYE-----NSRDGKSYSTNLAFTPPEYMRTGKVTPESVVYSFGTLLL 901
            G+    +VY+G L+N++  A+K  S  +    ++F  E + +  +  E+L +LIG C + +   L+ E M    L +HL        + W +RL++AL  A  +EY  +  K + ++ D+ +  IL  ++   +++ FG        N       +    +  PEY +T  ++ +S VYSFG +LL
Sbjct:  567 GKGGFGVVYQGCLNNEQ-AAIKVLSHSSAQGYKEFKTEVELLLRVHHEKLVSLIGYCDDDNGLALIYELMGKGNLKEHLSGKPGCSVLSWPIRLKIALESAIGIEYLHTGCKPKIVHRDVKSTNILLSEEFEAKIADFGLSRSFLIGNEAQPTVVAGTFGYLDPEYHKTSLLSMKSDVYSFGVVLL 751          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.257e-11
Identity = 66/219 (30.14%), Postives = 102/219 (46.58%), Query Frame = 2
Query:  284 VPSFTEFSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKF--NWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQ---PMKWAMRLRVALYLAQALEYCSS--KGRALYHDLHAYRILFDKDGNPRLSSFG--PYENSRDGKSYSTNL----AFTPPEYMRTGKVTPESVVYSFGTLLL 901
            V  FT  SLQQ    T  FS +N++   G      VY+ +L   +  AV++  K   N  +  +FLE    +  +R   +  L+G C E  +RLL+ E+  N TL   L H + +    + W +R+R+AL  A+ALEY        +++ +  +  IL D D    +S  G  P  +S      S  L     +  PE+   G  T +  VYSFG ++L
Sbjct:  463 VKHFTVASLQQ---HTNSFSHENLI---GTGMLGSVYRAELPGGKLFAVRKLDKKSPNHEEEGKFLELVNNIDRIRHANIVQLVGFCSEHSQRLLIHEYCRNGTL-HDLLHIDDRLKIELSWNVRVRIALEAAKALEYLHEICDPPSIHRNFKSANILLDDDIRVHVSDCGLAPLISSGAVSQLSGQLLAAYGYGAPEF-EYGIYTMKCDVYSFGVVML 673          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: Y1756_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07560 OS=Arabidopsis thaliana GN=At1g07560 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.254e-11
Identity = 53/186 (28.49%), Postives = 89/186 (47.85%), Query Frame = 2
Query:  368 GEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQPMKWAMRLRVALYLAQALEY--CSSKGRALYHDLHAYRILFDKDGNPRLSSFGPYENSRDG-KSYSTNL-----AFTPPEYMRTGKVTPESVVYSFGTLLL 901
            G+    +VY G ++    VAVK  S  +    ++F  E + +  +    L +L+G C E D   L+ ++M N  L KH     +  + W  RL +A+  A  LEY     K   ++ D+ +  IL D     +L+ FG   +   G +S+ + L      +   EY +T +++ +S VYSFG +LL
Sbjct:  577 GKGGFGMVYHGYINGTEEVAVKLLSPSSAQGYKEFKTEVELLLRVYHTNLVSLVGYCDEKDHLALIYQYMVNGDLKKHFS--GSSIISWVDRLNIAVDAASGLEYLHIGCKPLIVHRDVKSSNILLDDQLQAKLADFGLSRSFPIGDESHVSTLVAGTFGYLDHEYYQTNRLSEKSDVYSFGVVLL 760          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.254e-11
Identity = 62/219 (28.31%), Postives = 106/219 (48.40%), Query Frame = 2
Query:  263 GKNDRQTVPSFTEFSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKF--NWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETL--AKHLFHWETQPMKWAMRLRVALYLAQALEYCSS--KGRALYHDLHAYRILFDKDGNPRLSSFGPYENSRDGKSYSTNLAFTPPEYMRTGKVTPESVVYSFGTLLL 901
            G N   +   FT  SLQQ    T +FS +NI+   GE S   VY+ +L + +++AVK+ S          +FL     V  L+   +  L+G C E  +RLLV E+ PN +L  A HL     + + W +R+ +AL  ++AL++     +   ++ +  + ++L D   + R++  G        +  S    +  PE +  G  T +S V+S G ++L
Sbjct:  475 GLNSSSSATVFTIASLQQY---TNNFSEENII---GEGSIGNVYRAELRHGKFLAVKKLSNTINRTQSDGEFLNLVSNVLKLKRGHILELLGYCNEFGQRLLVYEYCPNGSLQDALHLDRKLHKKLTWNVRINIALGASKALQFLHEVCQPPVVHQNFKSSKVLLDGKLSVRVADSG-LAYMLPPRPTSQMAGYAAPE-VEYGSYTCQSDVFSLGVVML 685          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: Y2197_ARATH (Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.256e-11
Identity = 57/195 (29.23%), Postives = 94/195 (48.21%), Query Frame = 2
Query:  368 GEKSPNIVYKGKLDNDRWVAVKRF--SKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETL------AKHLFHWETQP-MKWAMRLRVALYLAQALEYCSSKGR--ALYHDLHAYRILFDKDGNPRLSSFGPYENSRD--GKSYSTNL----AFTPPEYMRTGKVTPESVVYSFGTLLL 901
            GE S   V+ GK   +  VA+K+   S    PDS  F  +   V  L+ +    L+G C EA+ R+L+ +F    +L       K +   E  P + W  R+++A   A+ LE+   K +   ++ D+ +  +L   D   +++ F     S D   + +ST +     +  PEY  TG++T +S VYSFG +LL
Sbjct:   80 GEGSYGRVFCGKFKGEA-VAIKKLDASSSEEPDS-DFTSQLSVVSRLKHDHFVELLGYCLEANNRILIYQFATKGSLHDVLHGRKGVQGAEPGPVLNWNQRVKIAYGAAKGLEFLHEKVQPPIVHRDVRSSNVLLFDDFVAKMADFNLTNASSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLL 272          
The following BLAST results are available for this feature:
BLAST of DY258302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
SIRK_ARATH1.462e-1127.93Senescence-induced receptor-like serine/threonine-... [more]
RPKL_ARATH1.462e-1126.05Receptor protein kinase-like protein At4g34220 OS=... [more]
RPK1_ARATH1.462e-1129.35Probable LRR receptor-like serine/threonine-protei... [more]
PUB35_ARATH1.462e-1130.77U-box domain-containing protein 35 OS=Arabidopsis ... [more]
Y1719_ARATH2.494e-1130.05Probable inactive receptor kinase At1g27190 OS=Ara... [more]
Y1755_ARATH3.257e-1126.88Probable LRR receptor-like serine/threonine-protei... [more]
SRF1_ARATH3.257e-1130.14Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
Y1756_ARATH4.254e-1128.49Probable LRR receptor-like serine/threonine-protei... [more]
SUB_ARATH4.254e-1128.31Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]
Y2197_ARATH7.256e-1129.23Probable protein kinase At2g41970 OS=Arabidopsis t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1AD07FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258302 ID=DY258302; Name=DY258302; organism=Citrus clementina; type=EST; length=1289bp
TTATTTGACCGAGCGCAGAGAGAGAGAGAGAGAGAGAGAGAGGCGGGGAG
AGACCTATAGTCCTACAGAGTGTTTTCGGTTTTCGGAGTTGCAGTTGCAC
GGAAGCAATGCCATACCGTCTGATCATTTGAAAAGCTTCTGATCGTTTGT
CCACCGTCTAATTTTTAATCAAATGGGGGGCCGTTGTTCCAAGTTTTCCA
TTTGCTGGTTCCACTGCCATCTCAAGTCTTCCGTCCTTGAATCCTCCGAT
CTCGACAGTGGGGGCAAAAACGACCGGCAAACAGTTCCGAGTTTCACTGA
GTTCAGCTTACAGCAACTGAGAACTGCCACGTGTGATTTCTCCCCCGACA
ACATAGTATCGGAACACGGTGAAAAATCTCCCAACATTGTTTACAAAGGG
AAGCTCGATAATGACCGTTGGGTCGCCGTTAAACGGTTCAGCAAATTCAA
CTGGCCCGATTCTCGCCAATTCCTCGAGGAGGCAAAGGCAGTGGGGAATT
TAAGGAGTGAGAGACTGGCGAATCTGATTGGTTGTTGCTATGAAGCCGAT
GAGAGATTGCTAGTCGCCGAGTTCATGCCGAATGAAACTCTTGCAAAACA
TCTCTTTCATTGGGAGACCCAGCCCATGAAATGGGCAATGAGGCTGAGGG
TGGCACTCTATTTGGCACAAGCTCTAGAATATTGCAGCAGCAAAGGGAGA
GCATTGTACCATGATCTNCATGCCTACAGAATCTTATTTGATAAGGATGG
CAATCCCAGGCTTTCTTCCTTTGGCCCTTATGAAAATAGTAGAGACGGTA
AAAGTTACAGCACTAACTTGGCTTTCACCCCACCCGAGTACATGAGAACA
GGTAAAGTGACCCCGGAAAGTGTTGTGTACAGCTTTGGCACCCTGTTGCT
AAATCTTCTGAGCGGCAAACCTATTCCCCCAGGCCTGCCCTTGATTTGAT
TCTAACCAGAATTTCTTATTGGTGATGACTCCGCCTCGGGAGGGCCTTTC
TCCAGGGAGAGGGGAACGAATTTAGGGGCGGTATACTTCCCCTTTTCTTG
CCGTCTGGAACCTCTGGAAAGGGCAAATGGTAATTCCCCTTGTTCATTTT
CCTCCGGGTCCCTTTCAAAAAAAACCCAAAGGTCTCCCTCTTTTGTTTTT
TTGGGGGGTTCCCCCCAGGGAAACCGCCCCCCTCTCCCCAAAACCCCCCT
GGGCTTTTTTACCCCCCCTCTGGGGGGGGAAGCGTTTGTTCCCAAAAGTG
GGGACCCCCCTTTCTGCGGCTCTTTTAACCGGTAAAAAA
back to top