DY258306

Overview
NameDY258306
Unique NameDY258306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1273
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258306_ssr438 microsatellite DY258306_ssr438:438..449. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258306_ssr5 microsatellite DY258306_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig31 contig Ccv1_Contig31:45..1317. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C22_ARATH (Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana GN=At2g25620 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 3.768e-28
Identity = 71/187 (37.97%), Postives = 108/187 (57.75%), Query Frame = 1
Query:   82 DWAFEEGPHSDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGD--MEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIV 636
            D AF E    D     SG+TA  AI+    L+VANAGD R V+SR+G+A  +SRDHKP    E+ RI  +GG +  G +NG LN+ARA+GD  ME  + K   ++   + A P++ + +L ++D+F+++ CDG+WD   SQ  VDF   +L   +      + ++E  L   +A     DN+T ++V
Sbjct:  174 DTAFLEACSLD-GSLASGTTALAAILFGRSLVVANAGDCRAVLSRQGKAIEMSRDHKPMSSKERRRIEASGGHVFDGYLNGQLNVARALGDFHMEGMKKKKDGSDCGPLIAEPELMTTKLTEEDEFLIIGCDGVWDVFMSQNAVDFARRRLQEHNDPVMCSKELVEEALKRKSA-----DNVTAVVV 354          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C57_ORYSJ (Probable protein phosphatase 2C 57 OS=Oryza sativa subsp. japonica GN=Os06g0597200 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.442e-27
Identity = 61/171 (35.67%), Postives = 100/171 (58.48%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            SG+TA  A++    L+VANAGD R V+  +G+A  +SRDHKP    EK RI  +GG+++ G +NG LN+ARAIGD   +  K       + +A P++    L ++D+F+++ CDGIWD   SQ  VDF   +L   +     C+ +++  +   +      DN++++++ F
Sbjct:  167 SGTTALAALVVGRSLLVANAGDCRAVLCCRGKAIEMSRDHKPSCNREKVRIEASGGYVYDGYLNGQLNVARAIGDWHMEGMKACDGLGPL-SAEPEVMIRNLTEEDEFLIIGCDGIWDVFRSQNAVDFARRKLQEHNDPVTCCKELVDEAIKRKSG-----DNLSVVVICF 331          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C13_ARATH (Probable protein phosphatase 2C 13 OS=Arabidopsis thaliana GN=At1g48040 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 4.166e-27
Identity = 68/170 (40.00%), Postives = 98/170 (57.65%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            G+TA  A+I   HL+VANAGD R V+ R+G A ++S DH+   E E+ RI   GG+   G +NG L + RAIGD E K N F  +   ++ ++P+I  + L +DD+F++LACDGIWD +SSQ  V  + + L           R     L    A  +  DNMT+I++ F
Sbjct:  187 GTTALTALIIGRHLLVANAGDCRAVLCRRGVAVDMSFDHRSTYEPERRRIEDLGGYFEDGYLNGVLAVTRAIGDWELK-NPFTDSSSPLI-SDPEIGQIILTEDDEFLILACDGIWDVLSSQNAVSNVRQGLRRHGD-----PRQCAMELGKEAARLQSSDNMTVIVICF 349          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PPMBL_MOUSE (Probable protein phosphatase 1B-like OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 7.106e-27
Identity = 63/174 (36.21%), Postives = 98/174 (56.32%), Query Frame = 1
Query:  121 GPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            G   GSTA   ++    L +A+ GDSR ++SR G     + DH+P    E+ERI  AGG +   RV GSL ++RA+GD  +KQ      E Q+V+A P++ ++   D+D+FV+LA DG+WD +S   L   +  +L     +  +C ++L+ CL   +      DNMT ++V F
Sbjct:  151 GDPGGSTAVALLVSPRFLYLAHCGDSRALLSRSGSVAFCTEDHRPHRPRERERIHDAGGTVRRRRVEGSLAVSRALGDFAYKQAPGRPPELQLVSAEPEVAALARQDEDEFVLLASDGVWDALSGADLAGLVTSRLRLGLDLELLCAQLLDTCLCKGS-----LDNMTCMVVCF 319          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C54_ORYSJ (Probable protein phosphatase 2C 54 OS=Oryza sativa subsp. japonica GN=Os06g0179700 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.212e-26
Identity = 60/172 (34.88%), Postives = 97/172 (56.40%), Query Frame = 1
Query:  127 TSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            +SG+TA  A+I    L++ANAGD R V+SR G A  +S DH+P   +EK R+   GG++  G +NG L + RA+GD   +  K        ++A P++  + L  DD+F+++  DGIWD  S+Q +VDF   +L   + + + C  ++E  +          DN+T ++V F
Sbjct:  159 SSGTTALTAMIFGRTLLIANAGDCRAVLSRCGTAIEMSVDHRPCSLSEKLRVESLGGYVDDGYLNGLLGVTRALGDWHLEGMKEAGNPGGPLSAEPELKMITLTKDDEFLIIGSDGIWDVFSNQNVVDFARRRLQEHNDVKSCCREIVEEAIKRGAT-----DNLTAVLVSF 325          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C27_ORYSJ (Probable protein phosphatase 2C 27 OS=Oryza sativa subsp. japonica GN=Os02g0799000 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.067e-26
Identity = 59/172 (34.30%), Postives = 101/172 (58.72%), Query Frame = 1
Query:  127 TSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            +SG+TA  A+I    L+VANAGD R V+SR+G A  +S+DH+     E++RI   GG++  G +NG L + RA+GD   +  K +      ++A P++  + L  +D+F+++  DGIWD  S+Q  VDF  ++L   + +   C++++E  +    +     DN+T ++V F
Sbjct:  153 SSGTTALTAMIFGRSLLVANAGDCRAVLSRRGTAIEMSKDHRTCCLNERKRIESLGGYVDDGYLNGQLAVTRALGDWHLEGLKEVGEPGGPLSAEPELKMITLTKEDEFLIIGSDGIWDFFSNQNAVDFTRKRLQEHNDLRLCCKQIVEEAIRRGAS-----DNLTAVMVSF 319          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C47_ORYSJ (Probable protein phosphatase 2C 47 OS=Oryza sativa subsp. japonica GN=Os05g0134200 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 5.092e-25
Identity = 61/172 (35.47%), Postives = 93/172 (54.07%), Query Frame = 1
Query:  127 TSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            +SG+TA  A++    L+VANAGD R V+ R+G A  +SRDH+ +   E ER+  +GG+I  G +NG L++ RA+GD + K           + A P+     L +DD+F+++ CDGIWD M+SQ  V  +   L            ++       TA     DN+T+I+V F
Sbjct:  183 SSGTTALTALVFGRQLLVANAGDCRAVLCRRGVAMEMSRDHRANYAEECERVAASGGYIEDGYLNGVLSVTRALGDWDMKMP---DGSISPLIAEPEFRQTMLTEDDEFLIMGCDGIWDVMTSQHAVSIVRRGLRQHDDPERCARELVMEAKRLETA-----DNLTVIVVCF 346          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PP2C4_YEAST (Protein phosphatase 2C homolog 4 OS=Saccharomyces cerevisiae GN=PTC4 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.482e-24
Identity = 77/203 (37.93%), Postives = 108/203 (53.20%), Query Frame = 1
Query:   94 EEGPHSDFAGPTSGSTACVA-IIRNNHLIVANAGDSRCVISRKGQAYN-LSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQN--------KFLSAEKQI----------VTANPDINSVEL-CDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAG-GEGCDNMTMIIV 636
            +E  +  FA  + GSTA VA II    L VAN GDSRC++S K      +S DHKP    E  RI   GG +  GRV G L L+RA  D +FK+         K  +  + +          VT  PD+   ++    D+F+VLACDGIWD  +++QL+ FI   L S +K+  +  ++L+  +A + +  G G DNMT IIV
Sbjct:  164 DEELYRHFANSSCGSTAVVACIINEESLYVANCGDSRCILSSKSNGIKTMSFDHKPQHIGELIRINDNGGTVSLGRVGGVLALSRAFSDFQFKRGVTYPHRRTKLTNITQNLTYGTPPQEAQVTVEPDVLMHKIDYSKDEFLVLACDGIWDIYNNKQLIHFIKYHLVSGTKLDTIITKLLDHGIAQANSNTGVGFDNMTAIIV 366          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PPMBL_HUMAN (Probable protein phosphatase 1B-like OS=Homo sapiens PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 2.527e-24
Identity = 63/172 (36.63%), Postives = 96/172 (55.81%), Query Frame = 1
Query:  127 TSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            T G TA V ++    L +A+ GDSR V+SR G     + DH+P    E+ERI  AGG I   RV GSL ++RA+GD  +K+      E Q+V+A P++ ++    +D+F++LA DG+WD +S   L   +  +L        +C ++L+ CL   +      DNMT I+V F
Sbjct:  160 TGGCTAVVLLVSPRFLYLAHCGDSRAVLSRAGAVAFSTEDHRPLRPRERERIHAAGGTIRRRRVEGSLAVSRALGDFTYKEAPGRPPELQLVSAEPEVAALARQAEDEFMLLASDGVWDTVSGAALAGLVASRLRLGLAPELLCAQLLDTCLCKGS-----LDNMTCILVCF 326          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C19_ORYSJ (Probable protein phosphatase 2C 19 OS=Oryza sativa subsp. japonica GN=Os02g0599700 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 4.311e-24
Identity = 65/171 (38.01%), Postives = 94/171 (54.97%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 645
            GSTACV +IR N LIV +AGDSRCV+SR GQA  LS DHKPD                               D   K+N+ L  E Q++T NPDI ++++ DD +F+V+A +G+W  M++Q +VD  H++L   ++   +CE +++        G    DN T+I+V FK
Sbjct:  385 GSTACVVVIRGNQLIVGHAGDSRCVLSRNGQASALSVDHKPDR------------------------------DFACKKNERLPPEDQMLTCNPDILTMDITDDMEFLVIATEGLWCNMTNQNVVDHTHDRLLEGAEARVICEELVQ-------FGLPSGDNTTVILVLFK 518          
The following BLAST results are available for this feature:
BLAST of DY258306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
P2C22_ARATH3.768e-2837.97Probable protein phosphatase 2C 22 OS=Arabidopsis ... [more]
P2C57_ORYSJ2.442e-2735.67Probable protein phosphatase 2C 57 OS=Oryza sativa... [more]
P2C13_ARATH4.166e-2740.00Probable protein phosphatase 2C 13 OS=Arabidopsis ... [more]
PPMBL_MOUSE7.106e-2736.21Probable protein phosphatase 1B-like OS=Mus muscul... [more]
P2C54_ORYSJ1.212e-2634.88Probable protein phosphatase 2C 54 OS=Oryza sativa... [more]
P2C27_ORYSJ2.067e-2634.30Probable protein phosphatase 2C 27 OS=Oryza sativa... [more]
P2C47_ORYSJ5.092e-2535.47Probable protein phosphatase 2C 47 OS=Oryza sativa... [more]
PP2C4_YEAST1.482e-2437.93Protein phosphatase 2C homolog 4 OS=Saccharomyces ... [more]
PPMBL_HUMAN2.527e-2436.63Probable protein phosphatase 1B-like OS=Homo sapie... [more]
P2C19_ORYSJ4.311e-2438.01Probable protein phosphatase 2C 19 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AE01FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258306 ID=DY258306; Name=DY258306; organism=Citrus clementina; type=EST; length=1273bp
GATAAAATAAATAAATTCACTGGCATGATAGAAGGGTTGATATGGTCTCC
AAGGGGTGGTGATAGTAATGATCAACCTAATGATTGGGCTTTTGAGGAGG
GCCCTCACTCTGATTTTGCTGGACCAACTTCTGGAAGCACAGCCTGTGTT
GCAATTATCAGAAACAATCATCTCATTGTTGCAAATGCTGGTGATTCTCG
ATGCGTGATATCTAGAAAGGGCCAGGCATATAATCTCTCAAGAGATCACA
AACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGATTT
ATACATGCAGGACGAGTCAATGGTAGTTTGAATCTTGCAAGAGCAATAGG
TGACATGGAATTCAAGCAGAACAAATTTTTGTCTGCTGAAAAGCAAATTG
TTACTGCCAATCCAGATATAAACTCTGTTGAGCTGTGTGATGATGATGAT
TTCGTTGTGCTGGCGTGTGATGGAATCTGGGATTGCATGTCAAGCCAGCA
ATTAGTAGATTTTATTCATGAACAACTACATTCGGAAAGCAAGATTTCTG
CTGTGTGCGAGAGAGTACTCGAGAGATGTTTGGCGCCATCAACAGCAGGA
GGTGAGGGATGTGACAACATGACCATGATCATAGTGCAGTTCAAGAAACC
AATCCAGTCCACTTCCTCCACTTCTAGTCAACAGTCCTTGGAATTCAAAT
CAGATGACTCAAGTCCACTACCCGAGGAAAGTGAATCAATGTAACCGCTG
TAATGTACCACTATGTCAGGCTGCACAATTCTGGTTCCTTTGCCCATAAG
AACATGCAAGAATCCCCTTCCTTTGAAAATTGGGAATCAAGACCTGTGTA
CCTGTAAATGGTCCACCCCTGAAAAAAAAAAAAAAAATAAATGAAATGTT
TACAAATTCCTTTGTTCTTGTTCCTGTTTGCCTTTTACTTTTAACAAACC
CCCATTTAAAACTTTCCAACTGTACAATTTTTTGAATTGCCTCACACCAA
ACCCACCCCCCCTCCTTTTTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAACCCCCCTTTTCCCTGTCAAAATTTGGCCATTTAAAAAAAAACCTTT
CTTTTTCAAATTTTTTTCCCACCAAAACGGCCCCCCAATCCCCCCAAAAA
AAAAAAAACATTTTTTTTTCCCCCCCCCCCCCCACAAAACCCCCCCCTCC
AAAGGGGGGGGACGGCACAAACATAACCGGGGGGGTCGCAAATATGCCTT
GTTCTTTTCTCCCGCCGCGCCCC
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