DY258306

Overview
NameDY258306
Unique NameDY258306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1273
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258306_ssr438 microsatellite DY258306_ssr438:438..449. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258306_ssr5 microsatellite DY258306_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig31 contig Ccv1_Contig31:45..1317. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C76_ARATH (Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana GN=At5g53140 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.533e-21
Identity = 67/174 (38.51%), Postives = 99/174 (56.90%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI-HAG--RVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 645
            GSTA  A++  NHL VAN GDSR ++S+ G+A  LS DHKP+   E++RI  AGG I  AG  RV G L ++RA G      N+ L   KQ V A P+I  +E+  + + +VLA DG+WD + ++  V        SE +  A   ++ +   +  +A     DN+T I+V+F+
Sbjct:  193 GSTASAAVLVGNHLYVANVGDSRTIVSKAGKAIALSDDHKPNRSDERKRIESAGGVIMWAGTWRVGGVLAMSRAFG------NRML---KQFVVAEPEIQDLEIDHEAELLVLASDGLWDVVPNEDAVAL----AQSEEEPEAAARKLTDTAFSRGSA-----DNITCIVVKFR 348          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C59_ARATH (Probable protein phosphatase 2C 59 OS=Arabidopsis thaliana GN=WIN2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.416e-21
Identity = 67/174 (38.51%), Postives = 95/174 (54.60%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI-HAG--RVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            +GSTA  AI+  + L+VAN GDSR VI R G A  +SRDHKPD   E++RI  AGGF+  AG  RV G L ++RA GD            KQ V A+P+I   ++    +F++LA DG+WD +S+++ V  I      E     +     +R  A         DN+T ++V+F
Sbjct:  124 AGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQSDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLL---------KQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVGMIKAIEDPEEGAKRLMMEAYQRGSA---------DNITCVVVRF 279          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C45_ORYSJ (Probable protein phosphatase 2C 45 OS=Oryza sativa subsp. japonica GN=Os04g0659500 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 4.461e-21
Identity = 66/181 (36.46%), Postives = 97/181 (53.59%), Query Frame = 1
Query:  109 SDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI-HAG--RVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            SD +    GSTA  A++  + L VAN GDSR +I R G A  +S+DHKPD   E++RI  AGGF+  AG  RV G L ++RA GD      K L   KQ V  +P+I    +    +F++LA DG+WD +++++ VD        E     + +   +R         E  DN+T ++V+F
Sbjct:  110 SDSSQNQCGSTASTAVLVGDRLFVANVGDSRAIICRGGNAIAVSKDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGD------KLL---KQYVVVDPEIREEVIDHSLEFLILASDGLWDVVTNEEAVDMTRSIHDPEEAAKKLLQEAYKR---------ESSDNITCVVVRF 272          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C11_ARATH (Probable protein phosphatase 2C 11 OS=Arabidopsis thaliana GN=At1g43900 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.298e-20
Identity = 68/175 (38.86%), Postives = 99/175 (56.57%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGF-IHAG--RVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 645
            +GSTA  A +  + LIVAN GDSR V SR G A  LS DHKPD   E++RI  AGGF I AG  RV G L ++RA GD + K   ++ AE +I     DI+++E      F+V+A DG+W+ +S++  V  + +   +E+    + +    R           CDN+T I+V+F+
Sbjct:  214 AGSTAATAFLIGDKLIVANVGDSRVVASRNGSAVPLSDDHKPDRSDERQRIEDAGGFIIWAGTWRVGGILAVSRAFGDKQLK--PYVIAEPEI--QEEDISTLE------FIVVASDGLWNVLSNKDAVAIVRDISDAETAARKLVQEGYAR---------GSCDNITCIVVRFE 369          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PPM1E_HUMAN (Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.695e-20
Identity = 65/171 (38.01%), Postives = 95/171 (55.56%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI---HAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIV 636
            G+T  V  IR N L VA  GDS+ ++ RKGQA  L + HKPD E EK+RI   GG I    A RVNGSL+++RAIGD E          K  +  + D  S  L   +D+++LACDG +D ++  + V  + + L   +  S++   V  + +A +   G   DN+T+I+V
Sbjct:  340 GTTGVVTFIRGNMLHVAWVGDSQVMLVRKGQAVELMKPHKPDREDEKQRIEALGGCIVWFGAWRVNGSLSVSRAIGDAE---------HKPYICGDADSASTVLDGTEDYLILACDGFYDTVNPDEAVKVVSDHLKENNGDSSM---VAHKLVASARDAGSS-DNITVIVV 497          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C75_ARATH (Probable protein phosphatase 2C 75 OS=Arabidopsis thaliana GN=AHG1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.695e-20
Identity = 66/192 (34.38%), Postives = 95/192 (49.48%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGG---FIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLER-----------------CLAPSTAGGEGCDNMTMIIVQFK 645
            SGSTA  A++ ++H+IVAN GDSR V+ R G A  LS DHKPD   E+ RI  AGG    +   RV G L  +RAIGD      ++L   K +V   P++  +     D+ +VLA DG+WD +SSQ   D     L  E+  S    R+ +                   L     G +  DN++++++  K
Sbjct:  230 SGSTAVTAVLTHDHIIVANTGDSRAVLCRNGMAIPLSNDHKPDRPDERARIEAAGGRVLVVDGARVEGILATSRAIGD------RYL---KPMVAWEPEVTFMRRESGDECLVLASDGLWDVLSSQLACDIARFCLREETPSSLDLNRMAQEDDNDGEQNPSRSVLAATLLTRLALGRQSSDNISVVVIDLK 412          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PPM1E_RAT (Protein phosphatase 1E OS=Rattus norvegicus GN=Ppm1e PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.214e-20
Identity = 64/171 (37.43%), Postives = 95/171 (55.56%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGG---FIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIV 636
            G+T  V  IR N L VA  GDS+ ++ RKGQA  L + HKPD E EK+RI   GG   +  A RVNGSL+++RAIGD E          K  +  + D  S  L   +D+++LACDG +D ++  + V  + + L   +  S++   V  + +A +   G   DN+T+I+V
Sbjct:  326 GTTGVVTFIRGNMLHVAWVGDSQVMLVRKGQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAE---------HKPYICGDADSASTVLDGTEDYLILACDGFYDTVNPDEAVKVVSDHLKENNGDSSM---VAHKLVASARDAGSS-DNITVIVV 483          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PPM1E_MOUSE (Protein phosphatase 1E OS=Mus musculus GN=Ppm1e PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.214e-20
Identity = 64/171 (37.43%), Postives = 95/171 (55.56%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGG---FIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIV 636
            G+T  V  IR N L VA  GDS+ ++ RKGQA  L + HKPD E EK+RI   GG   +  A RVNGSL+++RAIGD E          K  +  + D  S  L   +D+++LACDG +D ++  + V  + + L   +  S++   V  + +A +   G   DN+T+I+V
Sbjct:  326 GTTGVVTFIRGNMLHVAWVGDSQVMLVRKGQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAE---------HKPYICGDADSASTVLDGTEDYLILACDGFYDTVNPDEAVKVVSDHLKENNGDSSM---VAHKLVASARDAGSS-DNITVIVV 483          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C51_ORYSJ (Probable protein phosphatase 2C 51 OS=Oryza sativa subsp. japonica GN=Os05g0572700 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.214e-20
Identity = 63/183 (34.43%), Postives = 94/183 (51.37%), Query Frame = 1
Query:  127 TSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI---HAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSES------KISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKK 648
            T GSTA VA++    ++VAN GDSR V+SR G A  LS DHKPD   E ER+  AGG +   +  RV G L  +R+IGD            K  V+A P++  VE  D D+F++LA DG+WD +S++         L+  +       +S          LA         DN+++++V+ ++
Sbjct:  202 TVGSTAVVAVVGRRRIVVANCGDSRAVLSRGGVALPLSTDHKPDRPDELERVEAAGGRVINWNGYRVLGVLATSRSIGDYYL---------KPFVSAEPEVRVVERTDKDEFLILASDGLWDVVSNEVACKIARNCLNGRAASMFPESVSGSSAADAAALLAELAVSRGSRDNISVVVVELRR 375          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C09_ORYSJ (Probable protein phosphatase 2C 9 OS=Oryza sativa subsp. japonica GN=Os01g0846300 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.214e-20
Identity = 66/182 (36.26%), Postives = 96/182 (52.75%), Query Frame = 1
Query:    1 DKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGP-HSDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGG---FIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHS 534
            D + K    ++G + +     S+D+P     ++ P   D AG    STA VA++    ++VANAGDSR VISR G    LS DHKPD   E ERI  AGG   +    RV G L ++RAIGD            K  VT+ P++   E  DDD+ ++LA DG+WD ++++   + +    H+
Sbjct:  172 DVMEKSFARMDGEVGNRASTRSDDEPACPCEQQTPSRRDHAG----STAVVAVVSPTQVVVANAGDSRAVISRAGVPVALSVDHKPDRPDELERIEAAGGRVIYWDGARVLGVLAMSRAIGD---------GYLKPYVTSEPEVTVTERTDDDECLILASDGLWDVVTNEMACEVVRACFHN 340          
The following BLAST results are available for this feature:
BLAST of DY258306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
P2C76_ARATH1.533e-2138.51Probable protein phosphatase 2C 76 OS=Arabidopsis ... [more]
P2C59_ARATH3.416e-2138.51Probable protein phosphatase 2C 59 OS=Arabidopsis ... [more]
P2C45_ORYSJ4.461e-2136.46Probable protein phosphatase 2C 45 OS=Oryza sativa... [more]
P2C11_ARATH1.298e-2038.86Probable protein phosphatase 2C 11 OS=Arabidopsis ... [more]
PPM1E_HUMAN1.695e-2038.01Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE... [more]
P2C75_ARATH1.695e-2034.38Probable protein phosphatase 2C 75 OS=Arabidopsis ... [more]
PPM1E_RAT2.214e-2037.43Protein phosphatase 1E OS=Rattus norvegicus GN=Ppm... [more]
PPM1E_MOUSE2.214e-2037.43Protein phosphatase 1E OS=Mus musculus GN=Ppm1e PE... [more]
P2C51_ORYSJ2.214e-2034.43Probable protein phosphatase 2C 51 OS=Oryza sativa... [more]
P2C09_ORYSJ2.214e-2036.26Probable protein phosphatase 2C 9 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AE01FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258306 ID=DY258306; Name=DY258306; organism=Citrus clementina; type=EST; length=1273bp
GATAAAATAAATAAATTCACTGGCATGATAGAAGGGTTGATATGGTCTCC
AAGGGGTGGTGATAGTAATGATCAACCTAATGATTGGGCTTTTGAGGAGG
GCCCTCACTCTGATTTTGCTGGACCAACTTCTGGAAGCACAGCCTGTGTT
GCAATTATCAGAAACAATCATCTCATTGTTGCAAATGCTGGTGATTCTCG
ATGCGTGATATCTAGAAAGGGCCAGGCATATAATCTCTCAAGAGATCACA
AACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGATTT
ATACATGCAGGACGAGTCAATGGTAGTTTGAATCTTGCAAGAGCAATAGG
TGACATGGAATTCAAGCAGAACAAATTTTTGTCTGCTGAAAAGCAAATTG
TTACTGCCAATCCAGATATAAACTCTGTTGAGCTGTGTGATGATGATGAT
TTCGTTGTGCTGGCGTGTGATGGAATCTGGGATTGCATGTCAAGCCAGCA
ATTAGTAGATTTTATTCATGAACAACTACATTCGGAAAGCAAGATTTCTG
CTGTGTGCGAGAGAGTACTCGAGAGATGTTTGGCGCCATCAACAGCAGGA
GGTGAGGGATGTGACAACATGACCATGATCATAGTGCAGTTCAAGAAACC
AATCCAGTCCACTTCCTCCACTTCTAGTCAACAGTCCTTGGAATTCAAAT
CAGATGACTCAAGTCCACTACCCGAGGAAAGTGAATCAATGTAACCGCTG
TAATGTACCACTATGTCAGGCTGCACAATTCTGGTTCCTTTGCCCATAAG
AACATGCAAGAATCCCCTTCCTTTGAAAATTGGGAATCAAGACCTGTGTA
CCTGTAAATGGTCCACCCCTGAAAAAAAAAAAAAAAATAAATGAAATGTT
TACAAATTCCTTTGTTCTTGTTCCTGTTTGCCTTTTACTTTTAACAAACC
CCCATTTAAAACTTTCCAACTGTACAATTTTTTGAATTGCCTCACACCAA
ACCCACCCCCCCTCCTTTTTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAACCCCCCTTTTCCCTGTCAAAATTTGGCCATTTAAAAAAAAACCTTT
CTTTTTCAAATTTTTTTCCCACCAAAACGGCCCCCCAATCCCCCCAAAAA
AAAAAAAACATTTTTTTTTCCCCCCCCCCCCCCACAAAACCCCCCCCTCC
AAAGGGGGGGGACGGCACAAACATAACCGGGGGGGTCGCAAATATGCCTT
GTTCTTTTCTCCCGCCGCGCCCC
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