DY258306

Overview
NameDY258306
Unique NameDY258306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1273
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258306_ssr438 microsatellite DY258306_ssr438:438..449. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258306_ssr5 microsatellite DY258306_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig31 contig Ccv1_Contig31:45..1317. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PPM1K_HUMAN (Protein phosphatase 1K, mitochondrial OS=Homo sapiens GN=PPM1K PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.777e-20
Identity = 66/179 (36.87%), Postives = 100/179 (55.87%), Query Frame = 1
Query:  127 TSGSTACVAIIRNN-HLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI-----HAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCD-DDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            TSG+TA VA++R+   L+VA+ GDSR ++ RKG+   L+ DH P+ + EKERI K GGF+         VNG L + R+IGD++ K +         V A P+   ++L   DD F+VL  DGI   ++SQ++ DF+++         AV E+ ++        G E  DN T ++V F
Sbjct:  185 TSGTTATVALLRDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKTSG--------VIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNEAAHAVTEQAIQ-------YGTE--DNSTAVVVPF 346          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PPM1K_MOUSE (Protein phosphatase 1K, mitochondrial OS=Mus musculus GN=Ppm1k PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.932e-20
Identity = 70/196 (35.71%), Postives = 108/196 (55.10%), Query Frame = 1
Query:   82 DWAFEEGPH--SDFAGPTSGSTACVAIIRNN-HLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI-----HAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCD-DDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            D AF    H  +D +  TSG+TA VA++R+   L+VA+ GDSR ++ RKG+   L+ DH P+ + EKERI K GGF+         VNG L + R+IGD++ K +         V A P+   ++L   DD F+VL  DGI   ++SQ++ DF+++    +    +V E+ ++        G E  DN T ++V F
Sbjct:  168 DKAFASYAHLSADASLLTSGTTATVALLRDGVELVVASVGDSRALLCRKGKPMKLTTDHTPERKDEKERIKKFGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKASG--------VIAEPETTRIKLYHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPKEAAHSVTEQAIQ-------YGTE--DNSTAVVVPF 346          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C32_ORYSJ (Probable protein phosphatase 2C 32 OS=Oryza sativa subsp. japonica GN=Os03g0292100 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.932e-20
Identity = 61/180 (33.89%), Postives = 98/180 (54.44%), Query Frame = 1
Query:  130 SGSTACV-AIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI----HAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKIS--AVCERVLERCLAPSTAGGEGCDNMTMIIVQFKK 648
            SG   CV A+++   L+V+NAGD R V+SR G+A  L+ DH+   E E+ERI   GGF+       RV GSL ++R IGD            KQ V ++PD  ++ +    +F++LA DG+WD + +Q+ VD       S  K S    C R++E  +   +      D+++++I+Q ++
Sbjct:  223 SGGACCVTALLQKGGLVVSNAGDCRAVLSRAGKAEALTSDHRASREDERERIENLGGFVVNYRGTWRVQGSLAVSRGIGDAHL---------KQWVVSDPDTTTLGVDSQCEFLILASDGLWDKVENQEAVDIARPLYISNDKASRMTACRRLVETAVTRGST-----DDISIVIIQLQQ 388          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C49_ORYSJ (Probable protein phosphatase 2C 49 OS=Oryza sativa subsp. japonica GN=Os05g0457200 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.442e-20
Identity = 62/163 (38.04%), Postives = 86/163 (52.76%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGG---FIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAV-CERVLERCLAPSTAGGEG 609
            GSTA VA++  N ++VAN+GDSR V+ R G    LS DHKPD   E ERI  AGG   +    RV G L ++RAIGD            K  VT+ P++   E  DDD+ ++LA DG+WD ++++   + +     S    S   C R   + + P  AG  G
Sbjct:  213 GSTAVVAVVGPNRVVVANSGDSRAVLCRAGVPVPLSVDHKPDRPDELERIKAAGGRVIYWDGARVLGVLAMSRAIGD---------GYLKPYVTSEPEVTVTERADDDECLILASDGLWDVVTNEMACEVVRACFRSNGPPSPPGCSR--PKAVLPPPAGASG 364          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C13_ORYSJ (Probable protein phosphatase 2C 13 OS=Oryza sativa subsp. japonica GN=Os02g0255100 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.442e-20
Identity = 73/193 (37.82%), Postives = 99/193 (51.30%), Query Frame = 1
Query:   73 QPNDWAFEEGPHSDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGG-FIHAG--RVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            Q  D  F E   + F     GSTA  A++   HL VAN GDSR V+S+ G+A  LS DHKP+   E++RI  AGG  I AG  RV G L ++RA G      N+ L   K  V A P+I    + +D + +VLA DG+WD + +++ V     +   ES    + E    R  A         DN+T I+VQF
Sbjct:  185 QKTDTDFLESESNAFRD--DGSTASTAVLVGGHLYVANVGDSRAVVSKAGKAMALSEDHKPNRSDERKRIENAGGVVIWAGTWRVGGVLAMSRAFG------NRLL---KPFVVAEPEIQEELVNEDLECLVLASDGLWDVVENEEAVSLAKTEDLPESVARKLTEIAYSRGSA---------DNITCIVVQF 357          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PPM1K_BOVIN (Protein phosphatase 1K, mitochondrial OS=Bos taurus GN=PPM1K PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.413e-20
Identity = 64/179 (35.75%), Postives = 100/179 (55.87%), Query Frame = 1
Query:  127 TSGSTACVAIIRNN-HLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI-----HAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCD-DDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            TSG+TA VA++R+   L++A+ GDSR ++ RKG+   L+ DH P+ + EKERI K GGF+         VNG L + R++GD++ K +         V A P+   ++L   DD F+VL  DGI   ++SQ++ DF+++         AV E+ ++        G E  DN T ++V F
Sbjct:  185 TSGTTATVALLRDGIELVIASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSLGDLDLKTSG--------VIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNEAAHAVTEQAIQ-------YGTE--DNTTAVVVPF 346          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C77_ARATH (Protein phosphatase 2C 77 OS=Arabidopsis thaliana GN=ABI2 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.413e-20
Identity = 62/178 (34.83%), Postives = 94/178 (52.81%), Query Frame = 1
Query:  118 AGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI---HAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            A  T GST+ VA++   H+ VAN GDSR V+ R      LS DHKPD + E  RI  AGG +   +  RV G L ++R+IGD   K +         V  +P++ SV    +DD ++LA DG+WD M+++++ D   +++    K +A+        L P+   GEG D   M   ++
Sbjct:  226 APETVGSTSVVAVVFPTHIFVANCGDSRAVLCRGKTPLALSVDHKPDRDDEAARIEAAGGKVIRWNGARVFGVLAMSRSIGDRYLKPS---------VIPDPEVTSVRRVKEDDCLILASDGLWDVMTNEEVCDLARKRILLWHKKNAMA----GEALLPAEKRGEGKDPAAMSAAEY 390          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C07_ARATH (Protein phosphatase 2C 7 OS=Arabidopsis thaliana GN=HAB2 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.435e-19
Identity = 57/152 (37.50%), Postives = 87/152 (57.24%), Query Frame = 1
Query:  127 TSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI---HAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQL---HSESKISAVCER 564
            T GSTA VA++ ++H+IV+N GDSR V+ R   +  LS DHKPD E E  RI KAGG +      RV+G L ++R+IGD            +  V  +P++  +    +D+ ++LA DG+WD MS+Q+  DF   ++   H ++    + ER
Sbjct:  324 TVGSTAVVALVCSSHIIVSNCGDSRAVLLRGKDSMPLSVDHKPDREDEYARIEKAGGKVIQWQGARVSGVLAMSRSIGDQYL---------EPFVIPDPEVTFMPRAREDECLILASDGLWDVMSNQEACDFARRRILAWHKKNGALPLAER 466          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: ILKAP_BOVIN (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Bos taurus GN=ILKAP PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.874e-19
Identity = 62/187 (33.16%), Postives = 101/187 (54.01%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVI------SRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSE------------SKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQ 639
            GSTA   +  +N L +AN GDSR ++      S+K  A +LS++H P    E+ RI KAGG +  GRV G L ++R+IGD ++K+          VT+ PDI   +L  +D F++LACDG++   + ++ V+FI   L  E            ++  A C R+  + +   +A     DN+T+++V+
Sbjct:  194 GSTATCVLAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYKRCG--------VTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAVNFILSCLEDEKIQRREGKPTVDARYEAACNRLANKAVQRGSA-----DNVTVMVVR 367          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: ILKAP_RAT (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Rattus norvegicus GN=Ilkap PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.448e-19
Identity = 62/187 (33.16%), Postives = 101/187 (54.01%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVI------SRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSE------------SKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQ 639
            GSTA   +  +N L +AN GDSR ++      S+K  A +LS++H P    E+ RI KAGG +  GRV G L ++R+IGD ++K+          VT+ PDI   +L  +D F++LACDG++   + ++ V+FI   L  E            ++  A C R+  + +   +A     DN+T+++V+
Sbjct:  216 GSTATCVLAVDNILYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYKRCG--------VTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAVNFILSCLEDEKIQTREGKPAVDARYEAACNRLANKAVQRGSA-----DNVTVMVVR 389          
The following BLAST results are available for this feature:
BLAST of DY258306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
PPM1K_HUMAN3.777e-2036.87Protein phosphatase 1K, mitochondrial OS=Homo sapi... [more]
PPM1K_MOUSE4.932e-2035.71Protein phosphatase 1K, mitochondrial OS=Mus muscu... [more]
P2C32_ORYSJ4.932e-2033.89Probable protein phosphatase 2C 32 OS=Oryza sativa... [more]
P2C49_ORYSJ6.442e-2038.04Probable protein phosphatase 2C 49 OS=Oryza sativa... [more]
P2C13_ORYSJ6.442e-2037.82Probable protein phosphatase 2C 13 OS=Oryza sativa... [more]
PPM1K_BOVIN8.413e-2035.75Protein phosphatase 1K, mitochondrial OS=Bos tauru... [more]
P2C77_ARATH8.413e-2034.83Protein phosphatase 2C 77 OS=Arabidopsis thaliana ... [more]
P2C07_ARATH1.435e-1937.50Protein phosphatase 2C 7 OS=Arabidopsis thaliana G... [more]
ILKAP_BOVIN1.874e-1933.16Integrin-linked kinase-associated serine/threonine... [more]
ILKAP_RAT2.448e-1933.16Integrin-linked kinase-associated serine/threonine... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AE01FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258306 ID=DY258306; Name=DY258306; organism=Citrus clementina; type=EST; length=1273bp
GATAAAATAAATAAATTCACTGGCATGATAGAAGGGTTGATATGGTCTCC
AAGGGGTGGTGATAGTAATGATCAACCTAATGATTGGGCTTTTGAGGAGG
GCCCTCACTCTGATTTTGCTGGACCAACTTCTGGAAGCACAGCCTGTGTT
GCAATTATCAGAAACAATCATCTCATTGTTGCAAATGCTGGTGATTCTCG
ATGCGTGATATCTAGAAAGGGCCAGGCATATAATCTCTCAAGAGATCACA
AACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGATTT
ATACATGCAGGACGAGTCAATGGTAGTTTGAATCTTGCAAGAGCAATAGG
TGACATGGAATTCAAGCAGAACAAATTTTTGTCTGCTGAAAAGCAAATTG
TTACTGCCAATCCAGATATAAACTCTGTTGAGCTGTGTGATGATGATGAT
TTCGTTGTGCTGGCGTGTGATGGAATCTGGGATTGCATGTCAAGCCAGCA
ATTAGTAGATTTTATTCATGAACAACTACATTCGGAAAGCAAGATTTCTG
CTGTGTGCGAGAGAGTACTCGAGAGATGTTTGGCGCCATCAACAGCAGGA
GGTGAGGGATGTGACAACATGACCATGATCATAGTGCAGTTCAAGAAACC
AATCCAGTCCACTTCCTCCACTTCTAGTCAACAGTCCTTGGAATTCAAAT
CAGATGACTCAAGTCCACTACCCGAGGAAAGTGAATCAATGTAACCGCTG
TAATGTACCACTATGTCAGGCTGCACAATTCTGGTTCCTTTGCCCATAAG
AACATGCAAGAATCCCCTTCCTTTGAAAATTGGGAATCAAGACCTGTGTA
CCTGTAAATGGTCCACCCCTGAAAAAAAAAAAAAAAATAAATGAAATGTT
TACAAATTCCTTTGTTCTTGTTCCTGTTTGCCTTTTACTTTTAACAAACC
CCCATTTAAAACTTTCCAACTGTACAATTTTTTGAATTGCCTCACACCAA
ACCCACCCCCCCTCCTTTTTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAACCCCCCTTTTCCCTGTCAAAATTTGGCCATTTAAAAAAAAACCTTT
CTTTTTCAAATTTTTTTCCCACCAAAACGGCCCCCCAATCCCCCCAAAAA
AAAAAAAACATTTTTTTTTCCCCCCCCCCCCCCACAAAACCCCCCCCTCC
AAAGGGGGGGGACGGCACAAACATAACCGGGGGGGTCGCAAATATGCCTT
GTTCTTTTCTCCCGCCGCGCCCC
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