DY258306

Overview
NameDY258306
Unique NameDY258306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1273
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258306_ssr438 microsatellite DY258306_ssr438:438..449. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258306_ssr5 microsatellite DY258306_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig31 contig Ccv1_Contig31:45..1317. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: ILKAP_HUMAN (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Homo sapiens GN=ILKAP PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.448e-19
Identity = 62/187 (33.16%), Postives = 101/187 (54.01%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVI------SRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSE------------SKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQ 639
            GSTA   +  +N L +AN GDSR ++      S+K  A +LS++H P    E+ RI KAGG +  GRV G L ++R+IGD ++K+          VT+ PDI   +L  +D F++LACDG++   + ++ V+FI   L  E            ++  A C R+  + +   +A     DN+T+++V+
Sbjct:  216 GSTATCVLAVDNILYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYKRCG--------VTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAVNFILSCLEDEKIQTREGKSAADARYEAACNRLANKAVQRGSA-----DNVTVMVVR 389          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PP2C_LEICH (Protein phosphatase 2C OS=Leishmania chagasi PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.197e-19
Identity = 63/182 (34.62%), Postives = 101/182 (55.49%), Query Frame = 1
Query:  118 AGPTSGSTAC--VAIIRNN--HLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELC-DDDDFVVLACDGIWD-CMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 645
            +G   GST    VA+   N  HL V N GDSR V    G    L+ DHKP+ E E++RI    G +   RV+GSL ++RA GD E+K       E++++ A  D+   +   D +DFV+L CDG+++    ++++V ++ +QL + + ++ V  RV E  +   +      DN++ +IVQFK
Sbjct:  100 SGREGGSTGTFFVALKEGNKVHLQVGNVGDSRVVACIDGVCVPLTEDHKPNNEGERQRIENCAGRVENNRVDGSLAVSRAFGDREYKLGSGSQLEQKVI-ALADVQHKDFTFDSNDFVLLCCDGVFEGNFPNEEVVAYVKQQLETCNDLAEVAGRVCEEAIERGSR-----DNISCMIVQFK 275          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C30_ORYSJ (Probable protein phosphatase 2C 30 OS=Oryza sativa subsp. japonica GN=Os03g0268600 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.197e-19
Identity = 59/141 (41.84%), Postives = 81/141 (57.45%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGG---FIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCD-DDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESK 543
            GSTA VA++   H++VAN GDSR V+ R G A  LS DHKPD   E ERI  AGG   F    RV G L ++RAIGD         S  K  V  +P++  +E  D +D+F++LA DG+WD +S++   + +   L S  +
Sbjct:  191 GSTAVVAVLGPRHVVVANCGDSRAVLCRGGAAIPLSCDHKPDRPDELERIHAAGGRVIFWDGARVFGMLAMSRAIGD---------SYLKPYVICDPEVRVMERKDGEDEFLILASDGLWDVVSNEVACNVVRACLRSSGR 322          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C03_ARATH (Protein phosphatase 2C 3 OS=Arabidopsis thaliana GN=AIP1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.175e-19
Identity = 54/139 (38.85%), Postives = 82/139 (58.99%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGG---FIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSES 540
            GSTA V++I    +IVAN GDSR V+ R G+A  LS DHKPD   E +RI +AGG   +    RV G L ++RAIGD         +  K  VT+ P++   +  ++D+F++LA DG+WD ++++     +   L+ +S
Sbjct:  233 GSTAVVSVITPEKIIVANCGDSRAVLCRNGKAVPLSTDHKPDRPDELDRIQEAGGRVIYWDGARVLGVLAMSRAIGD---------NYLKPYVTSEPEVTVTDRTEEDEFLILATDGLWDVVTNEAACTMVRMCLNRKS 362          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C56_ORYSJ (Probable protein phosphatase 2C 56 OS=Oryza sativa subsp. japonica GN=Os06g0526800/Os06g0526950 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 5.453e-19
Identity = 63/173 (36.42%), Postives = 89/173 (51.45%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGG---FIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            GSTA  AI+  NHL V N GDSR V  + G+A  LS DHKP+ + E++RI  AGG   F    RVNG L ++RA G+          A K  V A PDI    + +  ++++LA DG+WD M ++  V  +  Q   ++    + E    R            DN+T I++QF
Sbjct:  189 GSTAVTAILVGNHLYVGNVGDSRVVALKAGKAVPLSEDHKPNRKDEQKRIEDAGGIVVFDDTWRVNGLLAMSRAFGN---------RALKHYVKAEPDIQEKVVDESLEYLILATDGLWDVMRNEDAVSLLKAQDGPKAAAMKLTEVAHSRLT---------LDNITCIVLQF 343          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: ILKAP_MOUSE (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Mus musculus GN=Ilkap PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.453e-19
Identity = 61/187 (32.62%), Postives = 101/187 (54.01%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVI------SRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHS------------ESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQ 639
            GSTA   +  +N L +AN GDSR ++      S+K  A +LS++H P    E+ RI KAGG +  GRV G L ++R+IGD ++K+          VT+ PDI   +L  +D F++LACDG++   + ++ V+FI   L              +++  A C R+  + +   +A     DN+T+++V+
Sbjct:  216 GSTATCVLAVDNILYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYKRCG--------VTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAVNFILSCLEDDKIQTREGKPAVDARYEAACNRLANKAVQRGSA-----DNVTVMVVR 389          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C04_ORYSJ (Protein kinase and PP2C-like domain-containing protein OS=Oryza sativa subsp. japonica GN=Os01g0541900 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.302e-19
Identity = 63/179 (35.20%), Postives = 96/179 (53.63%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAG----GFIHAGRVN-GSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKPI 654
            G TA  A+I  N L VANAGD R +++R G+ + ++RDH      E+ERI+K G      I   RV   +L + R+IGD +          K  VTA P++    L  DD+F+V+A DG+WD MS++ ++  I + +    K   +C     + LA   A     DN+T+I+V F +P+
Sbjct:  490 GCTAVTALIVRNKLFVANAGDCRAILNRAGEPFPMTRDHVASCPKERERIVKEGTEVKWQIDTWRVGAAALQVTRSIGDDDL---------KPAVTAQPEVIETILSPDDEFLVMASDGLWDVMSNEDVLSIIKDTV----KEPGMC----SKRLATEAAARGSKDNITVIVV-FLRPV 650          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C08_ORYSJ (Probable protein phosphatase 2C 8 OS=Oryza sativa subsp. japonica GN=Os01g0656200 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.215e-18
Identity = 54/132 (40.91%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  109 SDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI---HAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSS 495
            +D    T GSTA VA++    ++VAN GDSR V+SR G A  LS DHKPD   E ER+  AGG +   +  R+ G L  +R+IGD            K  V A P++  ++  D D+F++LA DG+WD +S+
Sbjct:  211 ADTGEQTVGSTAVVAVVGPRRIVVANCGDSRAVLSRGGVAVPLSSDHKPDRPDEMERVEAAGGRVINWNGYRILGVLATSRSIGDYYL---------KPYVIAEPEVTVMDRTDKDEFLILASDGLWDVVSN 333          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C56_ARATH (Protein phosphatase 2C 56 OS=Arabidopsis thaliana GN=ABI1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.587e-18
Identity = 55/149 (36.91%), Postives = 85/149 (57.05%), Query Frame = 1
Query:  118 AGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI---HAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAV 555
            A  T GST+ VA++  +H+ VAN GDSR V+ R   A  LS DHKPD E E  RI  AGG +   +  RV G L ++R+IGD   K +         +  +P++ +V+   +DD ++LA DG+WD M+ ++  +   +++    K +AV
Sbjct:  236 APETVGSTSVVAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHKPDREDEAARIEAAGGKVIQWNGARVFGVLAMSRSIGDRYLKPS---------IIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRILLWHKKNAV 375          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C53_ORYSJ (Probable protein phosphatase 2C 53 OS=Oryza sativa subsp. japonica GN=Os05g0592800 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.587e-18
Identity = 57/140 (40.71%), Postives = 83/140 (59.29%), Query Frame = 1
Query:  118 AGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI---HAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQL 528
            A  T GSTA VA++ ++H+IVAN GDSR V+ R  Q   LS DHKP+ E E  RI   GG +   +  RV G L ++R+IGD      K+L   K  +   P++  V    DDD ++LA DG+WD MS++++ D   +++
Sbjct:  251 APDTVGSTAVVAVVCSSHVIVANCGDSRAVLCRGKQPLPLSLDHKPNREDEYARIEALGGKVIQWNGYRVLGVLAMSRSIGD------KYL---KPYIIPVPEVTVVARAKDDDCLILASDGLWDVMSNEEVCDAARKRI 381          
The following BLAST results are available for this feature:
BLAST of DY258306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
ILKAP_HUMAN2.448e-1933.16Integrin-linked kinase-associated serine/threonine... [more]
PP2C_LEICH3.197e-1934.62Protein phosphatase 2C OS=Leishmania chagasi PE=2 ... [more]
P2C30_ORYSJ3.197e-1941.84Probable protein phosphatase 2C 30 OS=Oryza sativa... [more]
P2C03_ARATH4.175e-1938.85Protein phosphatase 2C 3 OS=Arabidopsis thaliana G... [more]
P2C56_ORYSJ5.453e-1936.42Probable protein phosphatase 2C 56 OS=Oryza sativa... [more]
ILKAP_MOUSE5.453e-1932.62Integrin-linked kinase-associated serine/threonine... [more]
P2C04_ORYSJ9.302e-1935.20Protein kinase and PP2C-like domain-containing pro... [more]
P2C08_ORYSJ1.215e-1840.91Probable protein phosphatase 2C 8 OS=Oryza sativa ... [more]
P2C56_ARATH1.587e-1836.91Protein phosphatase 2C 56 OS=Arabidopsis thaliana ... [more]
P2C53_ORYSJ1.587e-1840.71Probable protein phosphatase 2C 53 OS=Oryza sativa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1AE01FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258306 ID=DY258306; Name=DY258306; organism=Citrus clementina; type=EST; length=1273bp
GATAAAATAAATAAATTCACTGGCATGATAGAAGGGTTGATATGGTCTCC
AAGGGGTGGTGATAGTAATGATCAACCTAATGATTGGGCTTTTGAGGAGG
GCCCTCACTCTGATTTTGCTGGACCAACTTCTGGAAGCACAGCCTGTGTT
GCAATTATCAGAAACAATCATCTCATTGTTGCAAATGCTGGTGATTCTCG
ATGCGTGATATCTAGAAAGGGCCAGGCATATAATCTCTCAAGAGATCACA
AACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGATTT
ATACATGCAGGACGAGTCAATGGTAGTTTGAATCTTGCAAGAGCAATAGG
TGACATGGAATTCAAGCAGAACAAATTTTTGTCTGCTGAAAAGCAAATTG
TTACTGCCAATCCAGATATAAACTCTGTTGAGCTGTGTGATGATGATGAT
TTCGTTGTGCTGGCGTGTGATGGAATCTGGGATTGCATGTCAAGCCAGCA
ATTAGTAGATTTTATTCATGAACAACTACATTCGGAAAGCAAGATTTCTG
CTGTGTGCGAGAGAGTACTCGAGAGATGTTTGGCGCCATCAACAGCAGGA
GGTGAGGGATGTGACAACATGACCATGATCATAGTGCAGTTCAAGAAACC
AATCCAGTCCACTTCCTCCACTTCTAGTCAACAGTCCTTGGAATTCAAAT
CAGATGACTCAAGTCCACTACCCGAGGAAAGTGAATCAATGTAACCGCTG
TAATGTACCACTATGTCAGGCTGCACAATTCTGGTTCCTTTGCCCATAAG
AACATGCAAGAATCCCCTTCCTTTGAAAATTGGGAATCAAGACCTGTGTA
CCTGTAAATGGTCCACCCCTGAAAAAAAAAAAAAAAATAAATGAAATGTT
TACAAATTCCTTTGTTCTTGTTCCTGTTTGCCTTTTACTTTTAACAAACC
CCCATTTAAAACTTTCCAACTGTACAATTTTTTGAATTGCCTCACACCAA
ACCCACCCCCCCTCCTTTTTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAACCCCCCTTTTCCCTGTCAAAATTTGGCCATTTAAAAAAAAACCTTT
CTTTTTCAAATTTTTTTCCCACCAAAACGGCCCCCCAATCCCCCCAAAAA
AAAAAAAACATTTTTTTTTCCCCCCCCCCCCCCACAAAACCCCCCCCTCC
AAAGGGGGGGGACGGCACAAACATAACCGGGGGGGTCGCAAATATGCCTT
GTTCTTTTCTCCCGCCGCGCCCC
back to top