DY258328

Overview
NameDY258328
Unique NameDY258328
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1300
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_PYRHO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrococcus horikoshii GN=flpA PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.563e-45
Identity = 101/197 (51.27%), Postives = 130/197 (65.99%), Query Frame = 3
Query:  231 VVVEPHRHEGVF--IAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            V V+ H+  GV+  I     + + TKNLV G+ VY E+ I  + E     EYRIWNP RSKL AA++ G+ N  IKPG  VLYLG ASGTT SHVSDIVG  G ++ +EFS R  R+LV + ++R N++PI+ DA  P +YR LV  VDVIF DVAQP QA+IL  NA  +LK GG+ +I++K+  ID T   E VF
Sbjct:    2 VEVKKHKFPGVYTVIDDDGSERIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVF 193          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_PYRIL (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=flpA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.947e-44
Identity = 101/201 (50.25%), Postives = 135/201 (67.16%), Query Frame = 3
Query:  234 VVEPHRHE---GVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN--MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            VV+  +HE   GV++ K ++  + L TKNL  G+ VY E+ I  ++E     EYR WNP+RSKLAAA++ G+  I I+ G  +LYLGAASGTT SH+SDIVG  G++Y+VEFS R  R+ +   + + R NV+PI+ DAR P +Y   V  VDV++ DVAQP QA+ILA NA YFLK GG+ ++ IKA  ID T PA   F
Sbjct:    5 VVDVRKHEHHFGVYVVKFEDGTERLATKNLTPGKRVYGERLIKWRDE-----EYREWNPYRSKLAAAIVNGIKFIPIQEGTHMLYLGAASGTTPSHISDIVGERGLIYSVEFSPRVFREFIEKLVDQGRRNVVPILGDARFPYQYAHYVKGVDVVYIDVAQPAQAKILADNADYFLKPGGYVMLVIKAMSIDVTAPATETF 200          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_PYRCJ (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=flpA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 6.565e-44
Identity = 100/200 (50.00%), Postives = 132/200 (66.00%), Query Frame = 3
Query:  231 VVVEPHR-HEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN--MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            V V PH  H GV++ + ++  + L T+NL  G  VY E+ I  +      VEYR WNP+RSKLAAA+L G+  + I+ G  +LYLGAASGTT SH+SDIVG  G++Y+VEFS R  R+ +   + + R NVIPI+ DAR P +Y   +  VDV++ DVAQP QA+ILA NA YFLK GG+ ++ IKA  ID T PA   F
Sbjct:    6 VEVRPHELHYGVYVVRFEDGTERLATRNLTPGRRVYGERLIKWEG-----VEYREWNPYRSKLAAAILNGLKLVPIREGTHMLYLGAASGTTPSHISDIVGERGLIYSVEFSPRVFREFMEKLVDQGRRNVIPILGDARFPYQYAHYIKGVDVVYIDVAQPAQAKILADNADYFLKPGGYVMLVIKAMSIDVTAPATETF 200          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_PYRAR (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=flpA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.910e-43
Identity = 98/200 (49.00%), Postives = 133/200 (66.50%), Query Frame = 3
Query:  231 VVVEPH-RHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN--MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            V V PH RH GV++ + ++  + + TKNL  G+ VY E+ I    +     EYR WNP+RSKLAAA++ G+  + I+ G  +LYLGAASGTT SH+SDIVG  G++Y+VEFS R  R+ +   + + R NV+PI+ DAR P +Y   +  VDV++ DVAQP QA+ILA NA YFLK GG+ ++ IKA  ID T PA   F
Sbjct:    6 VDVRPHERHYGVYVVRFEDGTERIATKNLTPGKRVYGERLIKWGGD-----EYREWNPYRSKLAAAIVNGLKLVPIREGTHMLYLGAASGTTPSHISDIVGEKGLIYSVEFSPRVFREFMEKLVDQGRRNVVPILGDARFPYQYAHYIKGVDVVYIDVAQPAQAKILADNADYFLKPGGYVMLVIKAMSIDVTAPATETF 200          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_AERPE (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Aeropyrum pernix GN=flpA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 4.256e-43
Identity = 94/196 (47.96%), Postives = 129/196 (65.82%), Query Frame = 3
Query:  234 VVEPHRHEGVFIAKGKEDAL--VTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            V E  R  GV++ + ++ +L   TKNLV G+ VY E+      E     EYR WN +RSKLAAA+L G+  + +K G R+LYLG ASGTT SH+SDI+GP G +Y VEF+ R  RDL+ + + R N+ PI+ DAR P KYR LV  VD +++DVAQP+QA I+  NA +FL+ GG+ +++IKA  ID T     V+
Sbjct:    7 VREHDRWRGVYVVELEDGSLRIATKNLVPGQRVYGERIFRYNGE-----EYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVY 197          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_THENV (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=flpA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.758e-42
Identity = 99/200 (49.50%), Postives = 129/200 (64.50%), Query Frame = 3
Query:  231 VVVEPH-RHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN--MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            V V PH RH GV+  K ++  + L T+NL  G+ VY E+ +          EYR WNP+RSKLAAA+  G+  + I+ G  +LYLGAASGTT SH+SDIVG  G++Y+VEFS R  R+ +   + + R NV+PI+ DAR P +Y   V  VDV + DVAQP QA+ILA NA YFLK GG+ ++ IKA  ID T PA   F
Sbjct:    6 VEVRPHERHFGVYALKFEDGSERLATRNLTPGKRVYGERLVKWGG-----AEYREWNPYRSKLAAAIANGIKFVPIQEGTHILYLGAASGTTPSHMSDIVGERGLIYSVEFSPRVFREFMEKLVDQGRRNVVPILGDARFPYQYAHYVKGVDVAYIDVAQPAQAKILADNADYFLKPGGYVMLVIKAMSIDVTAPATETF 200          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_METKA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanopyrus kandleri GN=flpA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 5.752e-40
Identity = 90/199 (45.23%), Postives = 126/199 (63.32%), Query Frame = 3
Query:  228 KVVVEPHRH-EGVF--IAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            ++ +EPH   EGV+  I +       T+NLV G  VY E+ +    +     EYR+W P RSKLAA ++ G++    + G +VLYLGAA+GTT SHVSDI+  +GV Y VEF+ R  ++L+ + +KR N+IPI+ DA  P  Y  LV  VDVI+ D+AQP QA ++A NA  FL+ GG+ +++IKA  ID T   E VF
Sbjct:    3 EIEIEPHEEFEGVYWAIFEDGRKKPATENLVPGHQVYGERLVEYDGK-----EYRVWEPRRSKLAAMIMNGMEYFPFEEGSKVLYLGAAAGTTPSHVSDIIKESGVEYCVEFASRMMQELIPVCEKRPNMIPILGDATKPHGYAPLVEQVDVIYQDIAQPKQAEVVADNAEAFLRPGGYVIVAIKARSIDVTKEPEEVF 196          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_SULIY (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=flpA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 9.811e-40
Identity = 86/175 (49.14%), Postives = 116/175 (66.29%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            L T+NLV+G  VY E+ I  +      VEYR WN FRSKLA A+L G+    I+ G +VLYLGAASGTT+SHVSDI+  NG  Y VEFS R  R+L+ +A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G+ ++ IKA  ID T   + ++
Sbjct:   27 LCTRNLVSGFNVYGERLIKYEG-----VEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNARFFLKVNGYMLLVIKARSIDVTKDPKEIY 196          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_SULIN (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=flpA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 9.811e-40
Identity = 86/175 (49.14%), Postives = 116/175 (66.29%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            L T+NLV+G  VY E+ I  +      VEYR WN FRSKLA A+L G+    I+ G +VLYLGAASGTT+SHVSDI+  NG  Y VEFS R  R+L+ +A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G+ ++ IKA  ID T   + ++
Sbjct:   27 LCTRNLVSGFNVYGERLIKYEG-----VEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNARFFLKVNGYMLLVIKARSIDVTKDPKEIY 196          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_SULIM (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=flpA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 9.811e-40
Identity = 86/175 (49.14%), Postives = 116/175 (66.29%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            L T+NLV+G  VY E+ I  +      VEYR WN FRSKLA A+L G+    I+ G +VLYLGAASGTT+SHVSDI+  NG  Y VEFS R  R+L+ +A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G+ ++ IKA  ID T   + ++
Sbjct:   27 LCTRNLVSGFNVYGERLIKYEG-----VEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNARFFLKVNGYMLLVIKARSIDVTKDPKEIY 196          
The following BLAST results are available for this feature:
BLAST of DY258328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FLPA_PYRHO1.563e-4551.27Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRIL2.947e-4450.25Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRCJ6.565e-4450.00Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRAR1.910e-4349.00Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_AERPE4.256e-4347.96Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THENV2.758e-4249.50Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METKA5.752e-4045.23Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULIY9.811e-4049.14Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULIN9.811e-4049.14Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULIM9.811e-4049.14Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1AH02FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258328 ID=DY258328; Name=DY258328; organism=Citrus clementina; type=EST; length=1300bp
CTTTGTAGCCGGACAGAGCATCAAACATGAGACCTCCAAGAGGACGCGGT
GGTGGCGGTGGGTTCAGGGGAGGCAGAGGTGATGGAGGAGGAAGAGGAAG
AGGTGGCGGCCGAGGTGGTGGAGGTGGAAGAGGTGGTGGTAGCGCTATGA
GAGGCCGAGGTGGCGGTCGTGGCGGTGGCCGAGGTGGAGGAAGAGGACGC
GGTGGTGGAGGAATGAAGGGTGGAAGCAAGGTTGTAGTTGAGCCTCATAG
ACACGAAGGAGTGTTCATTGCCAAGGGCAAAGAAGACGCCCTTGTCACTA
AGAATCTCGTCGCCGGTGAGGCTGTCTACAATGAGAAGAGGATCTCCGTC
CAGAATGAAGATGGAACCAAAGTTGAGTATAGAATTTGGAATCCCTTCCG
TTCCAAATTAGCTGCAGCTGTTCTTGGTGGTGTTGATAATATTTGGATTA
AACCTGGTGTTAGGGTTCTATACCTTGGTGCTGCTTCCGGCACAACTGTC
TCACATGTTTCGGACATTGTTGGCCCTAATGGAGTAGTTTATGCAGTGGA
ATTTTCTCATAGAAGTGGTAGAGACTTGGTCAATATGGCAAAGAAGAGAA
CCAATGTTATACCCATAATTGAAGATGCTAGACATCCTGCCAAGTACCGT
ATGTTGGTCGGTATGGTAGATGTAATATTTTCTGACGTTGCCCAACCGGA
TCAGGCGAGGATTTTAGCCCTGAATGCATCATATTTTCTCAAAGCTGGAG
GTCATTTTGTTATTTCTATCAAGGCAAACTGCATAGATTCCACTGTTCCT
GCTGAGGCAGTGTTCCAGAGTTGAAGTTAAAAAGCTGCACAGGATCAGTC
CAACCCTTTGAGCAAGTGACCCTCGAGCCTTTTGGCGAGACCCCGCCTGT
GTTGTTGGGGGCTACCGATGCCCAAGAAACCAGAAAGCTTAAACCCTCCC
CCGAACTCCCGCATTTTGGTTGTTCCCAAACATTTATGCTGGGATCCCTT
GATTTTTGTATAACCTAGCCGGGAATGAAACATTTTTTGGCCTTCCTGAC
CCTGGTTTTTTTTTTTTTTTGAATTTTTTTGCGGGGGAAAAAAAAAAAAA
AAAAAAAAAACCCCCCCTTTTCTTTTTCAAAAATTGGGCGTTTTATTAAA
AAACCTTTTGGTCTTTTTCCTTTTTTTTTGCCCCGCAAACACGGGGCCCC
CCTTCCCCCCCCAAAAATAAAAAAAATCCTTATTTTTTCCCCCCCCCCCC
CCGCCTAAACTCCCCCCCCCCCCACAAGGGGGGGGGGGGGGCACTTAATA
back to top