DY258328

Overview
NameDY258328
Unique NameDY258328
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1300
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_SULIL (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=flpA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 9.811e-40
Identity = 86/175 (49.14%), Postives = 116/175 (66.29%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            L T+NLV+G  VY E+ I  +      VEYR WN FRSKLA A+L G+    I+ G +VLYLGAASGTT+SHVSDI+  NG  Y VEFS R  R+L+ +A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G+ ++ IKA  ID T   + ++
Sbjct:   27 LCTRNLVSGFNVYGERLIKYEG-----VEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNARFFLKVNGYMLLVIKARSIDVTKDPKEIY 196          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_SULIK (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=flpA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 9.811e-40
Identity = 86/175 (49.14%), Postives = 116/175 (66.29%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            L T+NLV+G  VY E+ I  +      VEYR WN FRSKLA A+L G+    I+ G +VLYLGAASGTT+SHVSDI+  NG  Y VEFS R  R+L+ +A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G+ ++ IKA  ID T   + ++
Sbjct:   27 LCTRNLVSGFNVYGERLIKYEG-----VEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNARFFLKVNGYMLLVIKARSIDVTKDPKEIY 196          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_SULIA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus islandicus (strain M.16.27) GN=flpA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 9.811e-40
Identity = 86/175 (49.14%), Postives = 116/175 (66.29%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            L T+NLV+G  VY E+ I  +      VEYR WN FRSKLA A+L G+    I+ G +VLYLGAASGTT+SHVSDI+  NG  Y VEFS R  R+L+ +A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G+ ++ IKA  ID T   + ++
Sbjct:   27 LCTRNLVSGFNVYGERLIKYEG-----VEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNARFFLKVNGYMLLVIKARSIDVTKDPKEIY 196          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_STAMF (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=flpA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 9.811e-40
Identity = 92/198 (46.46%), Postives = 129/198 (65.15%), Query Frame = 3
Query:  231 VVVEPH-RHEGVFIAKGKEDA--LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            V ++PH ++ GV+I + ++ +  L TKNLV G  VY E+      E     EYR WN +RSKLA A+  G+    I+ G  +LYLG A+GTT SH+SDIVGP G +++VEF+ R  R+ V +A  R N+ PI+ DAR P +YR LV MVD I++D+AQP+QA I+A NA YFLK  G+ +++IKA  ID T     ++
Sbjct:    5 VNIKPHEKYYGVYIVELEDGSVKLATKNLVPGHRVYGERLYRWGGE-----EYREWNLYRSKLAGALANGLAEQPIREGHSILYLGVATGTTASHISDIVGPTGRIFSVEFAPRVMREFVLVADIRKNLYPILGDARKPKEYRHLVEMVDGIYADIAQPEQAAIVADNADYFLKDNGYLLLAIKARSIDVTKEPSEIY 197          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_METBF (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=flpA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 9.811e-40
Identity = 98/187 (52.41%), Postives = 120/187 (64.17%), Query Frame = 3
Query:  255 EGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            +G+F     +  L TKNL  G+ VY EK I+V+      VEYR W+P RSKL A VL    NI +    +VLYLGAASGTTVSHVSDIV   G VYAVEF+ RS RDL+ +A +R N+ PI+ DA  P  Y  LV  VD+IF DVAQP+QA I A NA  FLK  G+ ++SIKA  ID+    + VF
Sbjct:    9 DGIFEVIKDKKQLATKNLDPGKTVYGEKLIAVEG-----VEYRTWDPRRSKLGAMVLKKF-NIPLTKNSKVLYLGAASGTTVSHVSDIVS-EGAVYAVEFAPRSMRDLIGLASRRKNIHPILADAGKPDSYSHLVEPVDLIFQDVAQPNQAEIAARNAVRFLKREGYLLLSIKARSIDTVAKPKEVF 188          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_METMA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanosarcina mazei GN=flpA PE=3 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 1.281e-39
Identity = 96/187 (51.34%), Postives = 119/187 (63.64%), Query Frame = 3
Query:  255 EGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            EG+F     +  L T NL  G+ VY EK ISV+ +     EYR W+P RSKL A VL   D I +K   +VLYLGAASGTTVSHVSDIV   G VY+VEF+ RS RD + +A +R N+ PI+ DA  P  Y  +V  VDVIF DVAQP+QA I A NA  FLK  G+ ++SIKA  ID+    + +F
Sbjct:    9 EGIFEVTKDKKQLSTLNLDPGKVVYGEKLISVEGD-----EYRTWDPRRSKLGAMVLKKFD-IPLKRNSKVLYLGAASGTTVSHVSDIVS-EGAVYSVEFAPRSMRDFIGLASRRKNIFPILADAGKPDSYAHIVEPVDVIFQDVAQPNQAEIAARNAVRFLKKDGYLLLSIKARSIDTAASPKEIF 188          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_NANEQ (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Nanoarchaeum equitans GN=flpA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.673e-39
Identity = 88/195 (45.13%), Postives = 120/195 (61.54%), Query Frame = 3
Query:  231 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            + V+PH+ EGV+I   K   L+TKNLV G+ VY E+    + E     EYR W PFRSKLA+A+  G+     K G  VLYLG ASGTT SH+SDI+G  G+++ VEF+ R  R+L+ +AKKR N++PI+ DA  P  Y+ +V   DVI+ DVAQP Q  I   N  +F K      +++KA  ID T   + +F
Sbjct:    7 IKVKPHKLEGVYIGNNK--FLLTKNLVKGQKVYTERIFKSKGE-----EYREWIPFRSKLASAIKKGLKTWPFKKGTIVLYLGIASGTTASHISDIIGEEGIIFGVEFAPRVLRELMFVAKKRKNIVPILADANQPETYQHIVVQSDVIYQDVAQPHQVEIFLKNLRFFAKPNAIGFLAVKARSIDVTKDPKVIF 194          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_METVS (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=flpA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.673e-39
Identity = 88/175 (50.29%), Postives = 118/175 (67.43%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            + TK+L  G+ VY EK I  +N+     EYRIWNP +SKL AA++ G+  + IK G +VLYLGA++GTT SHVSDI   + +VYAVEF+ R  R+ ++   +R N+IPI+ DA  P +Y  +VG VDVIF DVAQP+QA IL  NA +FL   G+ +ISIKA  ID T   + +F
Sbjct:   25 IATKSLAPGKRVYGEKLIYSENK-----EYRIWNPNKSKLGAAIINGLKKMPIKKGTKVLYLGASAGTTPSHVSDI-SEDTIVYAVEFAPRIMREFIDSCNERINLIPILGDANRPFEYSNIVGKVDVIFEDVAQPNQAEILVKNAKWFLNKDGYAMISIKARSIDVTKNPKEIF 193          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_METM5 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=flpA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 8.305e-39
Identity = 83/175 (47.43%), Postives = 116/175 (66.29%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            + TK+L+ G+ VY EK +   N     +EYR+WNP +SKL AA++ G+  + IK G +VLYLGA++GTT SHV+DI   N +VYA+EF+ R  R+ ++   +R N+IP++ DA  P  Y  +V  VDVIF DVAQP+QA IL  NA +FLK  G+ +ISIKA  +D T     +F
Sbjct:   25 IATKSLIPGKRVYGEKLVYSDN-----IEYRVWNPNKSKLGAAIINGLKKMPIKKGTKVLYLGASAGTTPSHVADIA-ENSLVYALEFAPRIMREFIDSCNERKNLIPVLGDANRPQDYSNIVEKVDVIFEDVAQPNQAEILVKNAKWFLKENGYAMISIKARSVDVTKNPREIF 193          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_SULSO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus solfataricus GN=flpA PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.417e-38
Identity = 85/175 (48.57%), Postives = 113/175 (64.57%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            L T+NLV    VY E+ I  +      VEYR WN FRSKLA A+L G+    I+ G +VLYLGAASGTT+SHVSDI+  NG  Y VEFS R  R+L+ +A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G  ++ IKA  ID T   + ++
Sbjct:   27 LCTRNLVPNFNVYGERLIKYEG-----VEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIY 196          
The following BLAST results are available for this feature:
BLAST of DY258328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FLPA_SULIL9.811e-4049.14Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULIK9.811e-4049.14Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULIA9.811e-4049.14Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_STAMF9.811e-4046.46Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METBF9.811e-4052.41Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METMA1.281e-3951.34Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_NANEQ1.673e-3945.13Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METVS1.673e-3950.29Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METM58.305e-3947.43Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULSO1.417e-3848.57Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AH02FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258328 ID=DY258328; Name=DY258328; organism=Citrus clementina; type=EST; length=1300bp
CTTTGTAGCCGGACAGAGCATCAAACATGAGACCTCCAAGAGGACGCGGT
GGTGGCGGTGGGTTCAGGGGAGGCAGAGGTGATGGAGGAGGAAGAGGAAG
AGGTGGCGGCCGAGGTGGTGGAGGTGGAAGAGGTGGTGGTAGCGCTATGA
GAGGCCGAGGTGGCGGTCGTGGCGGTGGCCGAGGTGGAGGAAGAGGACGC
GGTGGTGGAGGAATGAAGGGTGGAAGCAAGGTTGTAGTTGAGCCTCATAG
ACACGAAGGAGTGTTCATTGCCAAGGGCAAAGAAGACGCCCTTGTCACTA
AGAATCTCGTCGCCGGTGAGGCTGTCTACAATGAGAAGAGGATCTCCGTC
CAGAATGAAGATGGAACCAAAGTTGAGTATAGAATTTGGAATCCCTTCCG
TTCCAAATTAGCTGCAGCTGTTCTTGGTGGTGTTGATAATATTTGGATTA
AACCTGGTGTTAGGGTTCTATACCTTGGTGCTGCTTCCGGCACAACTGTC
TCACATGTTTCGGACATTGTTGGCCCTAATGGAGTAGTTTATGCAGTGGA
ATTTTCTCATAGAAGTGGTAGAGACTTGGTCAATATGGCAAAGAAGAGAA
CCAATGTTATACCCATAATTGAAGATGCTAGACATCCTGCCAAGTACCGT
ATGTTGGTCGGTATGGTAGATGTAATATTTTCTGACGTTGCCCAACCGGA
TCAGGCGAGGATTTTAGCCCTGAATGCATCATATTTTCTCAAAGCTGGAG
GTCATTTTGTTATTTCTATCAAGGCAAACTGCATAGATTCCACTGTTCCT
GCTGAGGCAGTGTTCCAGAGTTGAAGTTAAAAAGCTGCACAGGATCAGTC
CAACCCTTTGAGCAAGTGACCCTCGAGCCTTTTGGCGAGACCCCGCCTGT
GTTGTTGGGGGCTACCGATGCCCAAGAAACCAGAAAGCTTAAACCCTCCC
CCGAACTCCCGCATTTTGGTTGTTCCCAAACATTTATGCTGGGATCCCTT
GATTTTTGTATAACCTAGCCGGGAATGAAACATTTTTTGGCCTTCCTGAC
CCTGGTTTTTTTTTTTTTTTGAATTTTTTTGCGGGGGAAAAAAAAAAAAA
AAAAAAAAAACCCCCCCTTTTCTTTTTCAAAAATTGGGCGTTTTATTAAA
AAACCTTTTGGTCTTTTTCCTTTTTTTTTGCCCCGCAAACACGGGGCCCC
CCTTCCCCCCCCAAAAATAAAAAAAATCCTTATTTTTTCCCCCCCCCCCC
CCGCCTAAACTCCCCCCCCCCCCACAAGGGGGGGGGGGGGGCACTTAATA
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