DY258328

Overview
NameDY258328
Unique NameDY258328
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1300
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_METJA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanocaldococcus jannaschii GN=flpA PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.417e-38
Identity = 85/175 (48.57%), Postives = 122/175 (69.71%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            + TK++V G+ VY+EK I + +E     EYRIWNP +SKLAAA++ G+  + IK   ++LYLGA++GTT SHV+DI    G+VYA+E++ R  R+L++   +R N+IPI+ DA  P +Y  +V  VDVI+ DVAQP+QA IL  NA +FLK GG+ +I+IKA  ID T   + +F
Sbjct:   25 IATKSIVKGKKVYDEKIIKIGDE-----EYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIF 193          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_METMP (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus maripaludis GN=flpA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.156e-38
Identity = 84/175 (48.00%), Postives = 116/175 (66.29%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            + TK+LV G+ VY EK +   +     +EYRIWNP +SKL AA++ G+  + IK G +VLYLGA++GTT SHV+DI   N +VYA+EF+ R  R+ ++   +R N+IP++ DA  P  Y  +V  VDVIF DVAQP+QA IL  NA +FLK  G+ +ISIKA  +D T     +F
Sbjct:   25 IATKSLVPGKRVYGEKLVYSDS-----IEYRIWNPNKSKLGAAIINGLKKMPIKKGEKVLYLGASAGTTPSHVADIA-ENSLVYALEFAPRIMREFIDSCNERKNLIPVLGDANRPQDYSNIVEKVDVIFEDVAQPNQAEILVKNAKWFLKENGYAMISIKARSVDVTKNPREIF 193          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_METM7 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=flpA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.156e-38
Identity = 83/175 (47.43%), Postives = 116/175 (66.29%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            + TK+LV G+ VY EK +   +     +EYR+WNP +SKL AA++ G+  + IK G +VLYLGA++GTT SHV+DI   N +VYA+EF+ R  R+ ++   +R N+IP++ DA  P  Y  +V  VDVIF DVAQP+QA IL  NA +FLK  G+ +ISIKA  +D T     +F
Sbjct:   25 IATKSLVPGKRVYGEKLVYSDS-----IEYRVWNPNKSKLGAAIINGLKKMPIKKGTKVLYLGASAGTTPSHVADIA-ENSLVYALEFAPRIMREFIDSCNERKNLIPVLGDANRPQDYSNIVEKVDVIFEDVAQPNQAEILVKNARWFLKENGYAMISIKARSVDVTKNPREIF 193          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_METM6 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=flpA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.156e-38
Identity = 83/175 (47.43%), Postives = 115/175 (65.71%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            + TK+LV G+ VY EK +   N     +EYR+WNP +SKL AA++ G+  + IK G +VLYLGA++GTT SHV+DI     +VYA+EF+ R  R+ ++   +R N+IP++ DA  P  Y  +V  VDVIF DVAQP+QA IL  NA +FLK  G+ +ISIKA  +D T     +F
Sbjct:   25 IATKSLVPGKRVYGEKLVYSDN-----IEYRVWNPNKSKLGAAIINGLKKMPIKKGTKVLYLGASAGTTPSHVADIA-ETSLVYALEFAPRIMREFIDSCNERKNLIPVLGDANRPQDYSNIVEKVDVIFEDVAQPNQAEILVKNAKWFLKENGYAMISIKARSVDVTKNPREIF 193          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_SULTO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus tokodaii GN=flpA PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 5.383e-38
Identity = 88/168 (52.38%), Postives = 109/168 (64.88%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDST 794
            L TKNL  G +VY E+   V+      VEYR WN FRSKL  A+L G+    I  G +VLYLGAASGTT SHVSDIV   G VY VEFS R  R+ + +A+ R N+ PI+ DAR P  YR LV  VDV++ D+AQPD+  I   NA +FLK GG+ +++IKA  ID T
Sbjct:   27 LCTKNLAPGFSVYGERLFKVEG-----VEYREWNAFRSKLGGAILKGLKQNPIVKGTKVLYLGAASGTTPSHVSDIVELEGKVYGVEFSPRVVREFLLVAQHRPNLFPILADARFPQYYRTLVEDVDVLYVDIAQPDETDIAIYNAKFFLKNGGYMMMAIKARSIDVT 189          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_METAC (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanosarcina acetivorans GN=flpA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 5.383e-38
Identity = 92/187 (49.20%), Postives = 116/187 (62.03%), Query Frame = 3
Query:  255 EGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            EG+F     +  L T NL  G+ VY EK ISV+       EYR W+P RSKL A VL    NI +    +VLYLGAASGTTVSHVSDI    G VY+VEF+ RS RD + +A +R N+ PI+ DA  P  Y  +V  VD+IF DVAQP+QA I A NA+ FL   G+ ++SIKA  ID+    + +F
Sbjct:    9 EGIFEIMKDKRQLATLNLDPGKVVYGEKLISVEG-----AEYRTWDPRRSKLGAMVLKKF-NIPLSKDSKVLYLGAASGTTVSHVSDIAS-EGAVYSVEFASRSMRDFIRLASRRKNIFPILADAGKPDSYAHIVEPVDLIFQDVAQPNQAEIAARNAARFLNKNGYLLLSIKARSIDTAASPKEIF 188          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_METVO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus voltae GN=flpA PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.199e-37
Identity = 84/173 (48.55%), Postives = 115/173 (66.47%), Query Frame = 3
Query:  297 TKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            TK+LV  + VY EK ++V+N      EYR+WNP +SKL A+++ G+  + IK G +VLYLGA++GTT SHV+D V  +  VYAVEF+ R  R+ +   + R N+ PI+ DA  P +Y  +V  VDVIF DVAQP+QA IL  NA +FLK GG+ +ISIKA  +D T     +F
Sbjct:   25 TKSLVPNKRVYGEKLVNVKN-----TEYRVWNPNKSKLGASIINGLKEMPIKKGSKVLYLGASAGTTPSHVAD-VAEDSPVYAVEFAPRIMREFIESCEGRKNLFPILGDANKPEEYANIVEKVDVIFEDVAQPNQAEILIKNAKWFLKKGGYGMISIKARSVDVTENPRVIF 191          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_META3 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=flpA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.566e-37
Identity = 84/166 (50.60%), Postives = 116/166 (69.88%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            + TK+LV  + +Y EK I+ ++     +EYRIWNP RSKL AA++ G+  + IK G +VLYLG ++GTT SHV+DI   N  VY+VEF+ R  R+ ++++K R N+IPI+ DA +P +Y  +V  VDVIF DVAQP QA IL  NA +FLK GG+ +ISIKA  +D
Sbjct:   25 IATKSLVPSKRIYGEKLITGEDN----LEYRIWNPNRSKLGAAIVNGLKTMPIKKGSKVLYLGVSAGTTPSHVADIT-ENSPVYSVEFAPRIMREFLDVSKDRKNLIPILGDATNPVEYSNVVEEVDVIFEDVAQPKQAEILVNNAKWFLKEGGYGMISIKARSVD 185          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_METWO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanobacterium wolfei GN=flpA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.858e-36
Identity = 86/187 (45.99%), Postives = 114/187 (60.96%), Query Frame = 3
Query:  255 EGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            +GVFI +   D+LVT NL  G  VY EK I          EYR+W+P RSK+AAAVL G+    + P  RVLYLGA++GTT SH+SDIV   G VY VEFS R  R+L+ + + R N++P++EDA  P  Y  +V   D+++ DVAQPDQ  +   N   FLK  G+ +I +KA  ID T     +F
Sbjct:    9 DGVFIMR---DSLVTVNLTPGVRVYGEKLIEWGGS-----EYRVWDPRRSKMAAAVLNGLRGFQLNPESRVLYLGASAGTTASHISDIV-TMGRVYCVEFSPRMMRELIEVCRVRGNMVPLLEDASRPLDYMRMVENADLVYCDVAQPDQTGLFIRNMDCFLKDDGYGLIMVKARSIDVTRSPRKIF 186          
BLAST of DY258328 vs. ExPASy Swiss-Prot
Match: FLPA_SULAC (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus acidocaldarius GN=flpA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.595e-36
Identity = 83/175 (47.43%), Postives = 111/175 (63.43%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVF 815
            L TKNL  G  VY E+ I         VEYR WN FRSKLA A++ G+    I  G ++LYLGAASGTT SH+SDIV   G VY+VEFS R  R+L+ +A+ R N+ PI+ DAR P  Y+ LV  VD+++ D+AQP++  I   NA +FLK  G+ +I+IK+  ID T     ++
Sbjct:   27 LCTKNLSPGHNVYGERLIKYGG-----VEYREWNAFRSKLAGAIVKGLKYNPIVKGSKILYLGAASGTTPSHISDIVELQGKVYSVEFSPRVIRELLLVAQYRPNMFPILADARFPQYYKSLVENVDIVYVDIAQPNETEIAMYNARFFLKKNGYMMIAIKSRSIDVTKDPREIY 196          
The following BLAST results are available for this feature:
BLAST of DY258328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FLPA_METJA1.417e-3848.57Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METMP3.156e-3848.00Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METM73.156e-3847.43Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METM63.156e-3847.43Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULTO5.383e-3852.38Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METAC5.383e-3849.20Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METVO1.199e-3748.55Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_META31.566e-3750.60Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METWO3.858e-3645.99Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULAC8.595e-3647.43Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AH02FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258328 ID=DY258328; Name=DY258328; organism=Citrus clementina; type=EST; length=1300bp
CTTTGTAGCCGGACAGAGCATCAAACATGAGACCTCCAAGAGGACGCGGT
GGTGGCGGTGGGTTCAGGGGAGGCAGAGGTGATGGAGGAGGAAGAGGAAG
AGGTGGCGGCCGAGGTGGTGGAGGTGGAAGAGGTGGTGGTAGCGCTATGA
GAGGCCGAGGTGGCGGTCGTGGCGGTGGCCGAGGTGGAGGAAGAGGACGC
GGTGGTGGAGGAATGAAGGGTGGAAGCAAGGTTGTAGTTGAGCCTCATAG
ACACGAAGGAGTGTTCATTGCCAAGGGCAAAGAAGACGCCCTTGTCACTA
AGAATCTCGTCGCCGGTGAGGCTGTCTACAATGAGAAGAGGATCTCCGTC
CAGAATGAAGATGGAACCAAAGTTGAGTATAGAATTTGGAATCCCTTCCG
TTCCAAATTAGCTGCAGCTGTTCTTGGTGGTGTTGATAATATTTGGATTA
AACCTGGTGTTAGGGTTCTATACCTTGGTGCTGCTTCCGGCACAACTGTC
TCACATGTTTCGGACATTGTTGGCCCTAATGGAGTAGTTTATGCAGTGGA
ATTTTCTCATAGAAGTGGTAGAGACTTGGTCAATATGGCAAAGAAGAGAA
CCAATGTTATACCCATAATTGAAGATGCTAGACATCCTGCCAAGTACCGT
ATGTTGGTCGGTATGGTAGATGTAATATTTTCTGACGTTGCCCAACCGGA
TCAGGCGAGGATTTTAGCCCTGAATGCATCATATTTTCTCAAAGCTGGAG
GTCATTTTGTTATTTCTATCAAGGCAAACTGCATAGATTCCACTGTTCCT
GCTGAGGCAGTGTTCCAGAGTTGAAGTTAAAAAGCTGCACAGGATCAGTC
CAACCCTTTGAGCAAGTGACCCTCGAGCCTTTTGGCGAGACCCCGCCTGT
GTTGTTGGGGGCTACCGATGCCCAAGAAACCAGAAAGCTTAAACCCTCCC
CCGAACTCCCGCATTTTGGTTGTTCCCAAACATTTATGCTGGGATCCCTT
GATTTTTGTATAACCTAGCCGGGAATGAAACATTTTTTGGCCTTCCTGAC
CCTGGTTTTTTTTTTTTTTTGAATTTTTTTGCGGGGGAAAAAAAAAAAAA
AAAAAAAAAACCCCCCCTTTTCTTTTTCAAAAATTGGGCGTTTTATTAAA
AAACCTTTTGGTCTTTTTCCTTTTTTTTTGCCCCGCAAACACGGGGCCCC
CCTTCCCCCCCCAAAAATAAAAAAAATCCTTATTTTTTCCCCCCCCCCCC
CCGCCTAAACTCCCCCCCCCCCCACAAGGGGGGGGGGGGGGCACTTAATA
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