DY258334

Overview
NameDY258334
Unique NameDY258334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1077
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXPB9_ORYSJ (Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXPB9 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.774e-12
Identity = 55/167 (32.93%), Postives = 75/167 (44.91%), Query Frame = 1
Query:  124 ATYYGSPDGLGTPT--GACGFGGYGRT-VNDANEAGVSRL*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTD--YGEGDDTDFILSPRIYEIMAITDKTEQLYSYGVIDVEFETVPCRIK-GQNVMFKVHEDDRYPPYLAVAMLYVSGRYDVLPDDIWRKDRKDWVP 606
            AT+YG P G G+    GACG         N     G   +  +G GCG+CY  +C  P       V+V +TD  Y       F  S + +  MA   K  +L   G+ID++F  V C+   GQ V F V E    P YLAV + +V+   DV+  D+       W P
Sbjct:   48 ATWYGQPYGSGSTDNGGACGIKNVNLPPYNGMISCGNVPIFKDGRGCGSCYEVKCEQPAACSKQPVTVFITDMNYEPISAYHFDFSGKAFGAMACPGKETELRKAGIIDMQFRRVRCKYPGGQKVTFHV-EKGSNPNYLAVLVKFVADDGDVIQMDLQEAGLPAWRP 213          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXPB9_MAIZE (Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 3.027e-12
Identity = 55/174 (31.61%), Postives = 86/174 (49.43%), Query Frame = 1
Query:  115 SSTATYYGSPDGLGTPT--GACGFGGYGRTVNDANEAGVSRL*N-----NGTGCGTCYHDRCAVPEV*PNYGVSVLVTD--YGEGDDTDFILSPRIYEIMAITDKTEQLYSYGVIDVEFETVPCRI-KGQNVMFKVHEDDRYPPYLAVAMLYVSGRYDVLPDDIWRKDRKDWVP 606
            ++ AT+YG P+G G P   GACG     + VN    +G++   N     +G GCG+CY  RC          V+V +TD  Y       F LS + +  +A     ++L   G++DVEF  V C+   GQ ++F + E    P Y+AV + +V+   D++  +I  K   +W P
Sbjct:   45 TARATWYGQPNGAGAPDNGGACGI----KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVFITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYPAGQKIVFHI-EKGCNPNYVAVLVKFVADDGDIVLMEIQDKLSAEWKP 213          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.027e-12
Identity = 47/134 (35.07%), Postives = 63/134 (47.01%), Query Frame = 1
Query:  118 STATYYGSPDGLGTPTGACGFGGYGRTVNDANEAGVSR--L*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTDYGEG-----DDTDFILSPRIYEIMAITDKTEQLYSYGVIDVEFETVPCRIKGQNVMFKVHE 498
            +TAT+YGS DG G+  GACG+G     V      G     L   G GCG CY  RC    +     V+V+VTD   G       T F LS   +  +A+     QL + G I V +    C+  G+N+ F V+E
Sbjct:   48 ATATWYGSADGDGSDGGACGYGTLVDVVPMKTRVGAVSPVLFKGGEGCGACYKVRCLDASICSRRAVTVIVTDECPGGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRRTACKYGGKNIAFHVNE 181          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.953e-12
Identity = 47/153 (30.72%), Postives = 74/153 (48.37%), Query Frame = 1
Query:  124 ATYYGSPDGLGTPTGACGFGG--YGRTVNDANEAGVSRL*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTDYGEG-----DDTDFILSPRIYEIMAITDKTEQLYSYGVIDVEFETVPCRIKGQNVMFKVHEDDRYPPYLAVAMLYVSGRYDV 561
            AT+YG+ +G G+  GACG+ G  +    +    AG   +  +G GCG+CY  +C          V+V++TD   G     +   F LS   +  MA   + +QL + GV+ +++  VPC   G  + F V      P Y AV + Y +G  D+
Sbjct:   42 ATWYGAANGAGSDGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSACSGNPVTVVLTDECPGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCNWGGVKLTFVVDVGSN-PNYFAVLVKYENGDGDL 193          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.953e-12
Identity = 60/224 (26.79%), Postives = 93/224 (41.52%), Query Frame = 1
Query:  124 ATYYGSPDGLGTPTGACGF--GGYGRTVNDANEAGVSRL*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTDYGEG-----DDTDFILSPRIYEIMAITDKTEQLYSYGVIDVEFETVPCRIKGQNVMFKVHEDDRYPPYLAVAMLYVSGRYDVLPDDIWRKDRKDWVPDNKGFPCSI*HP*STTTSN*FEGSSERNRGGSFVLWQNNAIPKKCKAGSGYEAPIH 774
            ATYYG+P+G G+  GACG+      R  +    AG   L   G GCG CY  +C           +V++TD   G         F +S      MA     ++L + G++ V++  VPC+  G N+ F+V +    P Y  V + +  G  D+   D+       W P  + +     +  +T  +     S         VL  NN IP   K G  Y + ++
Sbjct:   69 ATYYGAPNGDGSDGGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEVKCTTNAACSGQPATVVITDECPGGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRV-DQGANPFYFEVLIEFEDGDGDLNAVDLMEAG-CGWTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGKVLVANNVIPASWKPGVTYRSLVN 290          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: MPAP1_PHAAQ (Major pollen allergen Pha a 1 OS=Phalaris aquatica PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.743e-12
Identity = 51/166 (30.72%), Postives = 78/166 (46.99%), Query Frame = 1
Query:  124 ATYYGSPDGLGTPT--GACGFGGYGRT-VNDANEAGVSRL*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTDYGEGD--DTDFILSPRIYEIMAITDKTEQLYSYGVIDVEFETVPCRI-KGQNVMFKVHEDDRYPPYLAVAMLYVSGRYDVLPDDIWRKDRKDWV 603
            +T+YG P G G     GACG+    +   N     G + +  +G GCG+C+  +C+ PE      ++V +TD  E       F LS   +  MA   + E +   G ++++F  V C+   G    F V E    P YLA+ + YV G  DV+  DI  K +  W+
Sbjct:   52 STWYGKPTGAGPKDNGGACGYKDVDKAPFNGMTGCGNTPIFKDGRGCGSCFELKCSKPESCSGEPITVHITDDNEEPIAPYHFDLSGHAFGSMAKKGEEENVRGAGELELQFRRVKCKYPDGTKPTFHV-EKGSNPNYLALLVKYVDGDGDVVAVDIKEKGKDKWI 216          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: MPAH1_HOLLA (Major pollen allergen Hol l 1 OS=Holcus lanatus PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.806e-12
Identity = 63/222 (28.38%), Postives = 99/222 (44.59%), Query Frame = 1
Query:  124 ATYYGSPDGLGTPT--GACGFGGYGRT-VNDANEAGVSRL*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTDYGEGD--DTDFILSPRIYEIMAITDKTEQLYSYGVIDVEFETVPCRI-KGQNVMFKVHEDDRYPPYLAVAMLYVSGRYDVLPDDIWRKDRKDWV--PDNKGFPCSI*HP*STTTSN*FEGSSERNRGGSFVLWQNNAIPKKCKAGSGYEA 765
            +T+YG P G G     GACG+    +   +     G + +  +G GCG+C+  +C  PE      V+V +TD  E       F LS   +  MA   + ++L S G ++++F  V C+   G    F V E    P YLA+ + Y+ G  DV+  DI  K +  W+   ++ G    +  P   T       ++E    G       + IP+  KA + YEA
Sbjct:   48 STWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKDGRGCGSCFEIKCTKPESCSGEPVTVHITDDNEEPIAPYHFDLSGHAFGSMAKKGEEQKLRSAGELELKFRRVKCKYPDGTKPTFHV-EKGSNPNYLALLVKYIDGDGDVVAVDIKEKGKDKWIELKESWGAVWRVDTPDKLTGPFTVRYTTEGGTKGE----AEDVIPEGWKADTAYEA 264          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.502e-11
Identity = 50/161 (31.06%), Postives = 77/161 (47.83%), Query Frame = 1
Query:  124 ATYYGSPDGLGTPTGACGFGGYGRTVNDAN-----EAGVSRL*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTDYGEG-----DDTDFILSPRIYEIMAITDKTEQLYSYGVIDVEFETVPCRIKGQNVMFKVHEDDRYPPYLAVAMLYVSGRYDVLPDDI 576
            AT+YG+ +G G+  GACG   Y   V+ A       AG   +  +G GCG+CY  +C+         V+V++TD   G     +   F LS   +  MA   + +QL + GV+ +++  VPC   G  + F V      P Y AV + Y +G  D+   D+
Sbjct:   42 ATWYGAANGAGSDGGACG---YQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSACSGNPVTVVLTDECPGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCNWGGVMLTFAVDAGSN-PSYFAVLVKYENGDGDLSGMDL 198          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXPB4_ARATH (Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.562e-11
Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 1
Query:  127 TYYGSPDGLGTPTGACGFGG--YGRTVNDANEAGVSRL*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTDYGEG-----DDTDFILSPRIYEIMAITDKTEQLYSYGVIDVEFETVPCRIKGQNVMFKVHEDDRYPPYLAVAMLYVSGRYDV 561
            T+YG P G G+  GACG+G       +     AG   L NNG GCGTCY   C          ++V +TD   G     +     LS +    +A   + +QL S GVI V ++   C  +G N++F++ +    P Y++  + Y +G  D+
Sbjct:   39 TWYGEPFGAGSTGGACGYGSAVANPPLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPACSGSPITVTITDECPGGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRM-DAGANPYYISFVVEYENGDGDL 189          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXPB2_ORYSJ (Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 3.346e-11
Identity = 57/183 (31.15%), Postives = 78/183 (42.62%), Query Frame = 1
Query:  103 NTLTSSTATYYGSPDGLGTPT--GACGFGGYGR-TVNDANEAGVSRL*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTD--YGEGDDTDFILSPRIYEIMAITDKTEQLYSYGVIDVEFETVPCRIKGQNVMFKVHEDDRYPPYLAVAMLYVSG-----RYDVL-------PDDIWRKDRKDW 600
            N    + AT+YG P+G G     GACGF    +         G   L  +G GCG CY  RC           +V++TD  Y       F LS   +  MA     +QL   G+ID++F  VPC  +G  V F V E    P YLAV + + +      + DV+       P  +W   R+ W
Sbjct:   29 NDWLPAKATWYGQPNGAGPDDNGGACGFKNTNQYPFMSMTSCGNEPLFQDGKGCGACYQIRCTNNPSCSGQPRTVIITDMNYYPVARYHFDLSGTAFGAMARPGLNDQLRHAGIIDIQFRRVPCYHRGLYVNFHV-EAGSNPVYLAVLVEFANKDGTVVQLDVMESLPSGKPTRVWTPMRRSW 210          
The following BLAST results are available for this feature:
BLAST of DY258334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
EXPB9_ORYSJ1.774e-1232.93Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB9_MAIZE3.027e-1231.61Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2[more]
EXB16_ORYSJ3.027e-1235.07Expansin-B16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB15_ORYSJ3.953e-1230.72Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB11_ORYSJ3.953e-1226.79Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]
MPAP1_PHAAQ6.743e-1230.72Major pollen allergen Pha a 1 OS=Phalaris aquatica... [more]
MPAH1_HOLLA8.806e-1228.38Major pollen allergen Hol l 1 OS=Holcus lanatus PE... [more]
EXB18_ORYSJ1.502e-1131.06Expansin-B18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB4_ARATH2.562e-1130.92Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 ... [more]
EXPB2_ORYSJ3.346e-1131.15Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AH12FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258334 ID=DY258334; Name=DY258334; organism=Citrus clementina; type=EST; length=1077bp
GTTCGTACCGCCAACTGAAATGTTTATATTTTGCAGATGGGGTTAAGTTC
ATACTACCTTCTTTACTTCTTGATGCTTTTGCCTGCATTGTGTTCCTCTC
AGAACACATTGACAAGTTCGACAGCTACATACTATGGTAGCCCTGACGGC
TTGGGGACACCAACTGGTGCTTGCGGGTTTGGTGGATATGGAAGAACTGT
AAATGATGCTAACGAGGCCGGTGTGTCGAGGCTTTGAAATAATGGAACTG
GTTGTGGAACTTGCTATCATGACAGATGCGCTGTACCAGAAGTTTAGCCA
AATTATGGGGTGTCCGTGCTGGTGACTGACTATGGTGAAGGAGACGACAC
AGACTTCATCCTCAGCCCACGCATATATGAAATAATGGCAATTACAGATA
AGACAGAACAGCTTTATTCTTATGGTGTCATCGACGTTGAATTCGAGACA
GTCCCTTGCCGGATCAAAGGCCAAAACGTCATGTTCAAGGTCCATGAAGA
CGACAGGTACCCCCCGTACTTGGCCGTAGCCATGCTGTACGTATCTGGCC
GATATGACGTCCTACCAGATGATATATGGCGGAAGGATCGTAAAGACTGG
GTGCCCGATAACAAGGGCTTTCCGTGCAGCATTTGACATCCCTAATCCAC
CACCACGAGCAATTAATTTGAGGGTTCAAGTGAGCGGAATCGCGGTGGCT
CCTTTGTGTTGTGGCAAAACAATGCTATTCCCAAAAAATGCAAAGCTGGG
AGTGGTTATGAAGCCCCCATTCATCTTGAATTAATTTAACATTCCCCAAC
ACTTCATGATAATGGGCCCCAGTTAACCACCTTCTTAGTGTCCTTTACAA
ATTCCAATTAGGTGTTGCCCCACCACCCGGAAGAGCGGTTCCCCTCTCTT
TTTCTCCTTCTTTTTTTTTCCAATTTTGTTGCCTTACCCGCGATTTGGCG
TAAACCCCCCCCCCCCCCAACTTTTACCCAGTTGGCCAAAATAAAATTGG
GGATTTTTACCCTTAATTTCCTCTTTTCTTCTCAACAACAGAACCCCTAA
ACTAAAAAAAAATTCCCCTTCTCTCTC
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