DY258334

Overview
NameDY258334
Unique NameDY258334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1077
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXPB1_ARATH (Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.346e-11
Identity = 46/170 (27.06%), Postives = 77/170 (45.29%), Query Frame = 1
Query:  118 STATYYGSPDGLGTPTGACGFGGYGRTVNDANEAGVSR--L*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTDY------GEGDDTDFILSPRIYEIMAITDKTEQLYSYGVIDVEFETVPCRIKGQNVMFKVHEDDRYPPYLAVAMLYVSGRYDVLPDDIWRKDRKDWV 603
            +TAT+YGS +G G+  GACG+G            G     L   G GCG CY  RC    +     V+++ TD        +   T F LS   +  MAI      + + G++++ +    C+ +G+N+ F V+       +L++ + Y  G  D+    I +   K+W+
Sbjct:   43 ATATWYGSAEGDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQSPSGPSAKAKHTHFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGST-DYWLSLLIEYEDGEGDIGSMHIRQAGSKEWI 211          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.346e-11
Identity = 51/159 (32.08%), Postives = 81/159 (50.94%), Query Frame = 1
Query:  124 ATYYGSPDGLGTPTGACGF-GGYGRT-VNDANEAGVSRL*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTDYGEG-----DDTDFILSPRIYEIMAITDKTEQLYSYGVIDVEFETVPCRIKGQNVMFKVHE-DDRYPPYLAVAMLYVSGRYDVLPDDI 576
            AT+YG  +G GT  GACG+ G  G+   N    AG   +  +G GCG+CY  +C+         V+V++TD   G     +   F LS   +  MA   + +QL + G + V++  VPC+ +G ++ F+V    ++Y  YLAV +    G  D+   D+
Sbjct:   43 ATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPSCSGKPVTVVLTDLCPGGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQY--YLAVLVEDEDGDGDLSAVDL 199          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXB11_MAIZE (Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.371e-11
Identity = 52/166 (31.33%), Postives = 75/166 (45.18%), Query Frame = 1
Query:  124 ATYYGSPDGLGTPT--GACGFGGYGRT-VNDANEAGVSRL*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTD--YGEGDDTDFILSPRIYEIMAITDKTEQLYSYGVIDVEFETVPCRIKGQNVMFKVHEDDRYPPYLAVAMLYVSGRYDVLPDDIWRKDRKDWVP 606
            AT+YG P G G     G CG+    +   N     G   +  +G GCG+C+  +C  P       V V +TD  Y       F L+   +  MA   + E+L   G+ID++F  V C+  G  V F + E    P YLA+ + YV G  D++  DI  K    + P
Sbjct:   54 ATWYGKPTGAGPDDNGGGCGYKDVNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY-GSKVTFHL-EKGCNPNYLALLVKYVDGDGDIVAVDIKEKGSDTYEP 217          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXPB6_ORYSJ (Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXPB6 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.708e-11
Identity = 50/156 (32.05%), Postives = 70/156 (44.87%), Query Frame = 1
Query:  124 ATYYGSPDGLGTPT--GACGFGGYGR-TVNDANEAGVSRL*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTD--YGEGDDTDFILSPRIYEIMAITDKTEQLYSYGVIDVEFETVPCRIKGQNVMFKVHEDDRYPPYLAVAMLYVSGRYDVLPDDI 576
            AT+YG+P G G     GACGF    +   +     G   +  +G GCG+CY  RC           +V++TD  Y       F LS   +  MA     ++L   G+ID++F  VPC   G  + F V E    P Y AV + Y     DV+  D+
Sbjct:   49 ATWYGAPTGAGPDDNGGACGFKNVNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCNKDPSCSGNIETVIITDMNYYPVARYHFDLSGTAFGAMAKPGLNDKLRHSGIIDIQFRRVPCNYPGLKINFHVEEGSN-PVYFAVLVEYEDLDGDVVQVDL 203          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXB17_ORYSJ (Expansin-B17 OS=Oryza sativa subsp. japonica GN=EXPB17 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 7.455e-11
Identity = 50/169 (29.59%), Postives = 80/169 (47.34%), Query Frame = 1
Query:  118 STATYYGSPDGLGTPTGACGFGGYGRTV-NDANEAGVSR-L*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTDYGEG-----DDTDFILSPRIYEIMAITDKTEQLYSYGVIDVEFETVPCRIKGQNVMFKVHEDDRYPPYLAVAMLYVSGRYDVLPDDIWRKDRKDWV 603
            +TAT+YG  +G G+  GACG+G     V   A    VS  L  +G GCG CY  +C    +     V+V+VTD   G       T F LS   +  MA+      L   G + V +    C+  G+N+ F+V+E      +L++ + +  G+ D+    I + +  +W+
Sbjct:   51 ATATWYGDAEGDGSTGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDECPGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRRTACKYGGKNIAFRVNEGST-NFWLSLLVEFEDGQGDIGSMQIKQANSVEWL 218          
The following BLAST results are available for this feature:
BLAST of DY258334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
EXPB1_ARATH3.346e-1127.06Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 ... [more]
EXB14_ORYSJ3.346e-1132.08Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]
EXB11_MAIZE4.371e-1131.33Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1[more]
EXPB6_ORYSJ5.708e-1132.05Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB17_ORYSJ7.455e-1129.59Expansin-B17 OS=Oryza sativa subsp. japonica GN=EX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1AH12FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258334 ID=DY258334; Name=DY258334; organism=Citrus clementina; type=EST; length=1077bp
GTTCGTACCGCCAACTGAAATGTTTATATTTTGCAGATGGGGTTAAGTTC
ATACTACCTTCTTTACTTCTTGATGCTTTTGCCTGCATTGTGTTCCTCTC
AGAACACATTGACAAGTTCGACAGCTACATACTATGGTAGCCCTGACGGC
TTGGGGACACCAACTGGTGCTTGCGGGTTTGGTGGATATGGAAGAACTGT
AAATGATGCTAACGAGGCCGGTGTGTCGAGGCTTTGAAATAATGGAACTG
GTTGTGGAACTTGCTATCATGACAGATGCGCTGTACCAGAAGTTTAGCCA
AATTATGGGGTGTCCGTGCTGGTGACTGACTATGGTGAAGGAGACGACAC
AGACTTCATCCTCAGCCCACGCATATATGAAATAATGGCAATTACAGATA
AGACAGAACAGCTTTATTCTTATGGTGTCATCGACGTTGAATTCGAGACA
GTCCCTTGCCGGATCAAAGGCCAAAACGTCATGTTCAAGGTCCATGAAGA
CGACAGGTACCCCCCGTACTTGGCCGTAGCCATGCTGTACGTATCTGGCC
GATATGACGTCCTACCAGATGATATATGGCGGAAGGATCGTAAAGACTGG
GTGCCCGATAACAAGGGCTTTCCGTGCAGCATTTGACATCCCTAATCCAC
CACCACGAGCAATTAATTTGAGGGTTCAAGTGAGCGGAATCGCGGTGGCT
CCTTTGTGTTGTGGCAAAACAATGCTATTCCCAAAAAATGCAAAGCTGGG
AGTGGTTATGAAGCCCCCATTCATCTTGAATTAATTTAACATTCCCCAAC
ACTTCATGATAATGGGCCCCAGTTAACCACCTTCTTAGTGTCCTTTACAA
ATTCCAATTAGGTGTTGCCCCACCACCCGGAAGAGCGGTTCCCCTCTCTT
TTTCTCCTTCTTTTTTTTTCCAATTTTGTTGCCTTACCCGCGATTTGGCG
TAAACCCCCCCCCCCCCCAACTTTTACCCAGTTGGCCAAAATAAAATTGG
GGATTTTTACCCTTAATTTCCTCTTTTCTTCTCAACAACAGAACCCCTAA
ACTAAAAAAAAATTCCCCTTCTCTCTC
back to top