DY258348

Overview
NameDY258348
Unique NameDY258348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1093 contig Ccv1_Contig1093:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PARP1_CRIGR (Poly [ADP-ribose] polymerase 1 OS=Cricetulus griseus GN=PARP1 PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 3.349e-36
Identity = 79/138 (57.25%), Postives = 101/138 (73.19%), Query Frame = 3
Query:    3 QGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYNVDQIRMRYVVQVNFKYK 416
            QGLRIAPPEAP TGYMFGKG+YFADM SKSANYC+ S     G++LL EVALG+M EL +A++   KLP GK S KG+G+T PDP  + TLE GV VPLG       +   LLYNEYIVY++ Q+ ++Y++++ F +K
Sbjct:  874 QGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEVALGNMYELKHASH-ISKLPKGKHSVKGLGKTTPDPSASITLE-GVEVPLGTGIPSGVNDTCLLYNEYIVYDIAQVNLKYLLKLKFNFK 1009          
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PARP2_HUMAN (Poly [ADP-ribose] polymerase 2 OS=Homo sapiens GN=PARP2 PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.373e-36
Identity = 83/139 (59.71%), Postives = 99/139 (71.22%), Query Frame = 3
Query:    6 GLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQ--LNSKGHLL-YNEYIVYNVDQIRMRYVVQVNFKY 413
            GLRIAPPEAP TGYMFGKG+YFADM SKSANYC+AS     G+LLL EVALG  +ELL AN  A+ L  GK STKG+G+ AP      TL +G  VPLG   +   LN  G+ L YNEYIVYN +Q+RMRY+++V F +
Sbjct:  442 GLRIAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAEGLLQGKHSTKGLGKMAPSSAHFVTL-NGSTVPLGPASDTGILNPDGYTLNYNEYIVYNPNQVRMRYLLKVQFNF 579          
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PARP1_MOUSE (Poly [ADP-ribose] polymerase 1 OS=Mus musculus GN=Parp1 PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 4.373e-36
Identity = 78/138 (56.52%), Postives = 101/138 (73.19%), Query Frame = 3
Query:    3 QGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYNVDQIRMRYVVQVNFKYK 416
            QGLRIAPPEAP TGYMFGKG+YFADM SKSANYC+ S     G+++L EVALG+M EL +A++   KLP GK S KG+G+T PDP  + TLE GV VPLG       +   LLYNEYIVY++ Q+ ++Y++++ F +K
Sbjct:  874 QGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLIMLGEVALGNMYELKHASH-ISKLPKGKHSVKGLGKTTPDPSASITLE-GVEVPLGTGIPSGVNDTALLYNEYIVYDIAQVNLKYLLKLKFNFK 1009          
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PARP1_HUMAN (Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=PARP1 PE=1 SV=4)

HSP 1 Score: 150.984 bits (380), Expect = 5.712e-36
Identity = 78/138 (56.52%), Postives = 99/138 (71.74%), Query Frame = 3
Query:    3 QGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYNVDQIRMRYVVQVNFKYK 416
            QGLRIAPPEAP TGYMFGKG+YFADM SKSANYC+ S     G++LL EVALG+M EL +A++   KLP GK S KG+G+T PDP  A    DGV VPLG       +   LLYNEYIVY++ Q+ ++Y++++ F +K
Sbjct:  875 QGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEVALGNMYELKHASH-ISKLPKGKHSVKGLGKTTPDP-SANISLDGVDVPLGTGISSGVNDTSLLYNEYIVYDIAQVNLKYLLKLKFNFK 1010          
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PARP1_BOVIN (Poly [ADP-ribose] polymerase 1 OS=Bos taurus GN=PARP1 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.662e-35
Identity = 77/138 (55.80%), Postives = 99/138 (71.74%), Query Frame = 3
Query:    3 QGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYNVDQIRMRYVVQVNFKYK 416
            QGLRIAPPEAP TGYMFGKG+YFADM SKSANYC+ S     G++LL E ALG+M EL +A +   KLP GK S KG+G+T PDP  + T+ DGV VPLG       +   LLYNEYIVY++ Q+ ++Y++++ F +K
Sbjct:  877 QGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEAALGNMYELKHARH-ISKLPKGKHSVKGLGKTTPDPSASITV-DGVEVPLGTGISSGVNDTCLLYNEYIVYDIAQVHLKYLLKLKFNFK 1012          
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PARP2_MOUSE (Poly [ADP-ribose] polymerase 2 OS=Mus musculus GN=Parp2 PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 2.171e-35
Identity = 80/139 (57.55%), Postives = 100/139 (71.94%), Query Frame = 3
Query:    6 GLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQ--LNSKGHLL-YNEYIVYNVDQIRMRYVVQVNFKY 413
            GLR+APPEAP TGYMFGKG+YFADM SKSANYC+AS     G+LLL EVALG  +ELL AN  A  L  GK STKG+G+ AP P    TL +G  VPLG   +   LN +G+ L YNE+IVY+ +Q+RMRY++++ F +
Sbjct:  418 GLRVAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAQGLLRGKHSTKGMGKMAPSPAHFITL-NGSTVPLGPASDTGILNPEGYTLNYNEFIVYSPNQVRMRYLLKIQFNF 555          
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PARP1_ARATH (Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thaliana GN=PARP1 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.702e-35
Identity = 74/138 (53.62%), Postives = 93/138 (67.39%), Query Frame = 3
Query:    3 QGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYNVDQIRMRYVVQVNFKYK 416
            QGLRIAPPEAPATGYMFGKG+YFAD+ SKSA YCY       G++LL EVALG++ EL  A Y  DK P GK STKG+G+  P   E       V VP GKP         L+YNEYIVY+  Q++++++++V FK+K
Sbjct:  846 QGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCYTCKKNPVGLMLLSEVALGEIHELTKAKY-MDKPPRGKHSTKGLGKKVPQDSEFAKWRGDVTVPCGKPVSSKVKASELMYNEYIVYDTAQVKLQFLLKVRFKHK 982          
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PARP_DROME (Poly [ADP-ribose] polymerase OS=Drosophila melanogaster GN=Parp PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.077e-34
Identity = 75/136 (55.15%), Postives = 94/136 (69.12%), Query Frame = 3
Query:    6 GLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYNVDQIRMRYVVQVNFKY 413
            GLRIAPPEAP TGYMFGKG+YFADM SKSANYC  S   + G++LL EVALGDM E   A Y  +KL + K S  G G+T PDP ++    DGV +P G+     + K  LLYNEYIVY+V Q+ ++Y+ ++ FKY
Sbjct:  858 GLRIAPPEAPPTGYMFGKGIYFADMVSKSANYCCTSQQNSTGLMLLSEVALGDMMECTSAKY-INKLSNNKHSCFGRGRTMPDPTKSYIRSDGVEIPYGETITDEHLKSSLLYNEYIVYDVAQVNIQYLFRMEFKY 992          
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PME1_CAEEL (Poly(ADP-ribose) polymerase pme-1 OS=Caenorhabditis elegans GN=pme-1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.226e-31
Identity = 73/142 (51.41%), Postives = 95/142 (66.90%), Query Frame = 3
Query:    3 QGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYA-NYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKG----HLLYNEYIVYNVDQIRMRYVVQVNFKY 413
            QGLRIAPPEAP +GYMFGKGVYFADMFSKS  YC A+    A  LLLC+VALG++ +L+ + N     LP G  S +G+G+  P  + +    DG  +PLG    QL  K     HLLYNE+IVY+VDQI+++Y+V+V   +
Sbjct:  801 QGLRIAPPEAPVSGYMFGKGVYFADMFSKSFFYCRANAKEEA-YLLLCDVALGNVQQLMASKNVSRQTLPAGFQSVQGLGRQCPREIGSYNHPDGYTIPLGLTYMQLQGKQDVDYHLLYNEFIVYDVDQIQLKYLVRVKMHH 941          
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PARP3_ORYSJ (Poly [ADP-ribose] polymerase 3 OS=Oryza sativa subsp. japonica GN=PARP3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 45/129 (34.88%), Postives = 70/129 (54.26%), Query Frame = 3
Query:   33 PATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALG-DMSELLYA--NYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYNVDQIRMRYVVQVNFK 410
            P  GYMFGK +  +D  +++A Y + +     G L+L   +LG ++ E+     + D  ++ + K+  KGVG+   DP E  T  DGV VP GK     N  G L YNEY VY+  Q+ + ++V V ++
Sbjct:  693 PVPGYMFGKAIVCSDAAAEAALYGFTAVDRPEGYLVLAVASLGKEIQEITGTPGSEDVKRMEEKKMGVKGVGRKTTDPSEHFTWRDGVTVPCGKLVPSTNKDGPLEYNEYAVYDPKQVSIAFLVGVKYE 821          
The following BLAST results are available for this feature:
BLAST of DY258348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
PARP1_CRIGR3.349e-3657.25Poly [ADP-ribose] polymerase 1 OS=Cricetulus grise... [more]
PARP2_HUMAN4.373e-3659.71Poly [ADP-ribose] polymerase 2 OS=Homo sapiens GN=... [more]
PARP1_MOUSE4.373e-3656.52Poly [ADP-ribose] polymerase 1 OS=Mus musculus GN=... [more]
PARP1_HUMAN5.712e-3656.52Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=... [more]
PARP1_BOVIN1.662e-3555.80Poly [ADP-ribose] polymerase 1 OS=Bos taurus GN=PA... [more]
PARP2_MOUSE2.171e-3557.55Poly [ADP-ribose] polymerase 2 OS=Mus musculus GN=... [more]
PARP1_ARATH3.702e-3553.62Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thal... [more]
PARP_DROME1.077e-3455.15Poly [ADP-ribose] polymerase OS=Drosophila melanog... [more]
PME1_CAEEL7.226e-3151.41Poly(ADP-ribose) polymerase pme-1 OS=Caenorhabditi... [more]
PARP3_ORYSJ9.481e-1534.88Poly [ADP-ribose] polymerase 3 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BC01FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258348 ID=DY258348; Name=DY258348; organism=Citrus clementina; type=EST; length=697bp
CTCAAGGTCTACGAATTGCTCCACCTGAAGCGCCTGCAACTGGTTACATG
TTTGGAAAGGGGGTTTATTTTGCTGATATGTTCTCCAAAAGTGCAAATTA
CTGTTATGCTTCTCCTTCTGCTACAGCTGGTGTGCTGCTTTTGTGTGAGG
TTGCACTTGGTGACATGTCTGAGCTCCTGTATGCAAATTATGATGCTGAT
AAGTTGCCAGATGGGAAGCTAAGCACAAAAGGAGTTGGTCAAACTGCCCC
AGATCCATTGGAAGCGGAGACACTTGAAGATGGGGTCATTGTTCCTCTTG
GAAAGCCAAAAGAGCAACTGAACTCCAAGGGTCATTTGTTGTACAATGAG
TACATAGTCTACAATGTGGATCAGATTAGGATGCGCTATGTGGTTCAAGT
GAATTTCAAATATAAATAGACTTGCGTCAGTACGTAATTTTCCAATTTTG
ATAGCAATTTTCTTGCTCTGTAATTTATTATCTAATGGGTAGAAATGATC
TTTTCAAAGTATTGGAATATGATACCTCCTATGTACTCATGCTTGGTTGG
GCAATTAGGAGGGAAAATCAATGGGCCAATTTTGTAACTTTTACCGCATC
CATCGATGTTGTGTATATTGGGAAATTTACGGAGGCACGGGCTGACACTG
ATGATAAACTTAAAAGAAATGAGGAAATAATCTGTCCCTTTTTTTTT
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