DY258348

Overview
NameDY258348
Unique NameDY258348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1093 contig Ccv1_Contig1093:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PARP3_MEDTR (Putative poly [ADP-ribose] polymerase 3 OS=Medicago truncatula GN=PARP3 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 43/135 (31.85%), Postives = 69/135 (51.11%), Query Frame = 3
Query:   33 PATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALG-DMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYNVDQIRMRYVVQVNFKYK*TCVST 434
            P  GYMFGK +  +D  +++A Y + +     G L+L   +LG +++EL     D   L + K+  KG+G+   D  E    +D + VP G      +    L YNEY VY+  Q+R+ Y+V V ++ K   + T
Sbjct:  663 PVPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASLGNEITELKSPPEDTTSLEEKKVGVKGLGKKKTDESEHFVWKDDIKVPCGSIIASEHEDSPLEYNEYAVYDPKQVRISYLVGVKYEEKDAVIDT 797          
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PARP3_SOYBN (Poly [ADP-ribose] polymerase 3 OS=Glycine max GN=PARP3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12
Identity = 43/129 (33.33%), Postives = 67/129 (51.94%), Query Frame = 3
Query:   33 PATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALG-DMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYNVDQIRMRYVVQVNFKYK 416
            P  GYMFGK +  +D  +++A Y + +     G L+L   +LG +++EL     DA  L + K+  KG G+   D  E    +D + VP GK     +    L YNEY VY+  + R+ Y+V V ++ K
Sbjct:  676 PIPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASLGNEITELKTPPEDASSLEEKKVGVKGPGKKKTDESEHFVWKDDIKVPCGKLVASDHQDSPLEYNEYAVYDKKRARISYLVGVKYEEK 804          
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PARP3_ARATH (Poly [ADP-ribose] polymerase 3 OS=Arabidopsis thaliana GN=PARP3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 40/131 (30.53%), Postives = 67/131 (51.15%), Query Frame = 3
Query:   33 PATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGD-MSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYNVDQIRMRYVVQVNFKYK*T 422
            P  GYMFG+ +  +D  +++A Y + +     G L+L   +LG+ ++E      D   L D K+  KG+G+   +  E     D + VP G+     +    L YNEY VY+  Q  +R++V+V ++ K T
Sbjct:  677 PVPGYMFGRAIVCSDAAAEAARYGFTAVDRPEGFLVLAVASLGEEVTEFTSPPEDTKTLEDKKIGVKGLGRKKTEESEHFMWRDDIKVPCGRLVPSEHKDSPLEYNEYAVYDPKQTSIRFLVEVKYEEKGT 807          
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PME2_CAEEL (Poly(ADP-ribose) polymerase pme-2 OS=Caenorhabditis elegans GN=pme-2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 46/129 (35.66%), Postives = 69/129 (53.49%), Query Frame = 3
Query:   24 PEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGV-LLLCEVALGDMSELLYANYDADKLPD--GKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYNVDQIRMRYVVQV 401
            P     G MFG GVYFA++ +KSANYC   P A+  V +LLCEV   +   L  +  DAD+  +   K S    G+  P     +T+E   I       E +  +  LLY+EY+++N +  +++YVV+V
Sbjct:  404 PVGDRCGLMFGNGVYFANVPTKSANYC--CPEASKRVFMLLCEVETANPLVLYESEIDADEKMEKAKKTSVYAAGKHTP----RDTVEINGIPAFKSNLETIEEETRLLYDEYVMFNKEHFKIKYVVEV 526          
The following BLAST results are available for this feature:
BLAST of DY258348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
PARP3_MEDTR6.794e-1331.85Putative poly [ADP-ribose] polymerase 3 OS=Medicag... [more]
PARP3_SOYBN2.582e-1233.33Poly [ADP-ribose] polymerase 3 OS=Glycine max GN=P... [more]
PARP3_ARATH9.811e-1230.53Poly [ADP-ribose] polymerase 3 OS=Arabidopsis thal... [more]
PME2_CAEEL1.281e-1135.66Poly(ADP-ribose) polymerase pme-2 OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BC01FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258348 ID=DY258348; Name=DY258348; organism=Citrus clementina; type=EST; length=697bp
CTCAAGGTCTACGAATTGCTCCACCTGAAGCGCCTGCAACTGGTTACATG
TTTGGAAAGGGGGTTTATTTTGCTGATATGTTCTCCAAAAGTGCAAATTA
CTGTTATGCTTCTCCTTCTGCTACAGCTGGTGTGCTGCTTTTGTGTGAGG
TTGCACTTGGTGACATGTCTGAGCTCCTGTATGCAAATTATGATGCTGAT
AAGTTGCCAGATGGGAAGCTAAGCACAAAAGGAGTTGGTCAAACTGCCCC
AGATCCATTGGAAGCGGAGACACTTGAAGATGGGGTCATTGTTCCTCTTG
GAAAGCCAAAAGAGCAACTGAACTCCAAGGGTCATTTGTTGTACAATGAG
TACATAGTCTACAATGTGGATCAGATTAGGATGCGCTATGTGGTTCAAGT
GAATTTCAAATATAAATAGACTTGCGTCAGTACGTAATTTTCCAATTTTG
ATAGCAATTTTCTTGCTCTGTAATTTATTATCTAATGGGTAGAAATGATC
TTTTCAAAGTATTGGAATATGATACCTCCTATGTACTCATGCTTGGTTGG
GCAATTAGGAGGGAAAATCAATGGGCCAATTTTGTAACTTTTACCGCATC
CATCGATGTTGTGTATATTGGGAAATTTACGGAGGCACGGGCTGACACTG
ATGATAAACTTAAAAGAAATGAGGAAATAATCTGTCCCTTTTTTTTT
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