DY258354

Overview
NameDY258354
Unique NameDY258354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1252
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258354 vs. ExPASy Swiss-Prot
Match: FLS2_ARATH (LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.308e-12
Identity = 39/105 (37.14%), Postives = 52/105 (49.52%), Query Frame = 2
Query:  113 PNNQLRDWNQ-NQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 424
            P   L DW     +  C W+ + CD++ +V SV+L      G LSP I  L  L  L L  N  TG+IP E+G L+ L  L L  N   G IP  +  LK + +L
Sbjct:   45 PLGVLSDWTIIGSLRHCNWTGITCDSTGHVVSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYL 149          
BLAST of DY258354 vs. ExPASy Swiss-Prot
Match: CLV1_ARATH (Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.076e-11
Identity = 50/145 (34.48%), Postives = 71/145 (48.97%), Query Frame = 2
Query:   77 DALFALRTSLRVPNNQ-LRDW--NQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSL---------------------DLE-----NNRLVGKIPPSLGNLKKLQFL 424
            + L  L++S+  P    L DW  + +    C++S V CD+   V S+ +S     GT+SP IG+L  L  LTL  N  TGE+P E+ +L+SL  L                     DLE     NN   GK+PP +  LKKL++L
Sbjct:   29 EVLLNLKSSMIGPKGHGLHDWIHSSSPDAHCSFSGVSCDDDARVISLNVSFTPLFGTISPEIGMLTHLVNLTLAANNFTGELPLEMKSLTSLKVLNISNNGNLTGTFPGEILKAMVDLEVLDTYNNNFNGKLPPEMSELKKLKYL 173          
BLAST of DY258354 vs. ExPASy Swiss-Prot
Match: RLK5_ARATH (Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.405e-11
Identity = 53/139 (38.13%), Postives = 68/139 (48.92%), Query Frame = 2
Query:   29 IILDCLH--YLALSDYQGDALFALRTSLRV--PNNQLRDWNQNQ-VNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEI-PEELGNLSSLTSLDLENNRLVGKIPPSLG-NLKKLQFL 424
            I+L CL   YL       DA    +  L +  P   L  W+ N  V PC W  V CD ++NV SV LSS    G     +  L +L +L+L  N I G +  ++     +L SLDL  N LVG IP SL  NL  L+FL
Sbjct:    6 ILLLCLSSTYLPSLSLNQDATILRQAKLGLSDPAQSLSSWSDNNDVTPCKWLGVSCDATSNVVSVDLSSFMLVGPFPSILCHLPSLHSLSLYNNSINGSLSADDFDTCHNLISLDLSENLLVGSIPKSLPFNLPNLKFL 144          
BLAST of DY258354 vs. ExPASy Swiss-Prot
Match: RCH1_ARATH (LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.835e-11
Identity = 45/137 (32.85%), Postives = 61/137 (44.53%), Query Frame = 2
Query:   92 LRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSNN-------VASVTL-------------------SSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 424
            L +S   P +    WN +  +PC W  + C +S+N       V SV L                   S+ N +G +S  IG    L  + L  N + GEIP  LG L +L  L L +N L GKIPP LG+   L+ L
Sbjct:   47 LHSSNSPPPSVFSGWNPSDSDPCQWPYITCSSSDNKLVTEINVVSVQLALPFPPNISSFTSLQKLVISNTNLTGAISSEIGDCSELIVIDLSSNSLVGEIPSSLGKLKNLQELCLNSNGLTGKIPPELGDCVSLKNL 183          
BLAST of DY258354 vs. ExPASy Swiss-Prot
Match: IMK3_ARATH (Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.835e-11
Identity = 46/123 (37.40%), Postives = 64/123 (52.03%), Query Frame = 2
Query:   62 SDYQGDALFALRTSLRVPNNQLRDWNQNQVNPCT--WSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 424
            +DYQG  L A++  L  P   LR WN +  + C+  W+ + C     V  + L   +  G +S +IG L+ L  L+L  N + G IP  LG + +L  + L NNRL G IP SLG    LQ L
Sbjct:   59 ADYQG--LQAVKQELIDPRGFLRSWNGSGFSACSGGWAGIKCAQGQ-VIVIQLPWKSLGGRISEKIGQLQALRKLSLHDNNLGGSIPMSLGLIPNLRGVQLFNNRLTGSIPASLGVSHFLQTL 178          
BLAST of DY258354 vs. ExPASy Swiss-Prot
Match: Y1571_ARATH (Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.131e-11
Identity = 48/144 (33.33%), Postives = 74/144 (51.39%), Query Frame = 2
Query:   14 LVLVAIILDCLHYLALSDYQGDALFALRTSLRVPNNQLRDW----NQNQVNPCT-WSNVICDNSNNVASVTLSSMNFSGTLS--PRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 424
            L+ ++IIL C    + +  + +AL   +++    +++L  W    N N    CT W  V C++  ++  + L++    GT    P I  L  L+ + L  N ++G IP + GNLS L   DL  N L G+I PSLGNLK L  L
Sbjct:   14 LLFISIILSCSISASATIAEANALLKWKSTF-TNSSKLSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNLTNTGIEGTFQDFPFIS-LSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVL 155          

HSP 2 Score: 69.707 bits (169), Expect = 4.089e-11
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 2
Query:  185 NSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 424
            N + +    LS+ + +G +SP +G L+ L+ L L  N +T  IP ELGN+ S+T L L  N+L G IP SLGNLK L  L
Sbjct:  124 NLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVL 203          

HSP 3 Score: 69.707 bits (169), Expect = 4.089e-11
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  185 NSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 424
            N  ++ ++ LS    +G++   +G L+ L+ L+L  N +TG IP +LGN+ S+  L+L NN+L G IP SLGNLK L  L
Sbjct:  268 NMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTIL 347          
BLAST of DY258354 vs. ExPASy Swiss-Prot
Match: RCH2_ARATH (Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.109e-11
Identity = 38/113 (33.63%), Postives = 59/113 (52.21%), Query Frame = 2
Query:   92 LRTSLRVPNN-QLRDWNQNQVNPCT-WSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 424
            L +S   P++  L +WN     PC  W+ + C +   +  + + S+    +L   +   R+L  LT+ G  +TG +PE LG+   L  LDL +N LVG IP SL  L+ L+ L
Sbjct:   46 LHSSSPTPSSLSLFNWNSIDNTPCNNWTFITCSSQGFITDIDIESVPLQLSLPKNLPAFRSLQKLTISGANLTGTLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETL 158          
The following BLAST results are available for this feature:
BLAST of DY258354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
FLS2_ARATH6.308e-1237.14LRR receptor-like serine/threonine-protein kinase ... [more]
CLV1_ARATH1.076e-1134.48Receptor protein kinase CLAVATA1 OS=Arabidopsis th... [more]
RLK5_ARATH1.405e-1138.13Receptor-like protein kinase 5 OS=Arabidopsis thal... [more]
RCH1_ARATH1.835e-1132.85LRR receptor-like serine/threonine-protein kinase ... [more]
IMK3_ARATH1.835e-1137.40Probable leucine-rich repeat receptor-like protein... [more]
Y1571_ARATH3.131e-1133.33Probable leucine-rich repeat receptor-like protein... [more]
RCH2_ARATH9.109e-1133.63Receptor-like protein kinase 2 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BC07FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258354 ID=DY258354; Name=DY258354; organism=Citrus clementina; type=EST; length=1252bp
GAAGAGCGTGAAATTGGTCCTTGTTGCTATAATATTGGATTGCTTGCATT
ATTTGGCGCTGTCTGATTATCAAGGAGATGCACTATTTGCATTGAGGACT
TCATTGCGTGTTCCAAACAATCAGCTAAGAGATTGGAATCAGAACCAAGT
TAATCCTTGCACTTGGTCAAATGTCATTTGTGATAATAGCAACAATGTTG
CCTCTGTAACATTGTCTTCCATGAACTTTTCTGGAACCTTGTCCCCAAGA
ATAGGAGTTCTGAGGACTCTTTCAACACTCACATTAAAAGGAAATGGCAT
AACTGGTGAAATACCTGAAGAGCTTGGTAATCTTTCAAGCTTGACAAGCT
TGGACTTGGAAAATAATCGCTTAGTTGGAAAAATACCACCTTCCCTTGGC
AATCTTAAAAAGCTTCAGTTCTTGTAAGTGATTCCATCAATAAAAATTTT
AGTTTTAATCTATATGGTTTTTCTTCACTTTTTTCATGATCTGGCACAAA
AAGTCTCGATTTGTTTTTGATCGTTGAACCAGGACTTTGAGTCAAAACAA
TTTTAGTGGGACCATCCCTGATTCACTCACAACTCTTTCAAGCTTGATCA
GTATTCAGCTGGATTCGAATAATCTCAGTGGTCAAATTCCAGTGCATTTG
TTCCAAATTCCAAAATACAATTTCACGGGAAACAACTTGAACTGTGGTAA
AACTCTTCCACATTCTTGTGAATCTAGTAGCAATGATTCANGGAGTTCAA
AGAAGCCAAAGATTGGAATTATAGTTGGAATTGTTGGAGGACTTATAGTT
CTTATTTCTGGAGGCTACTATTTTTTCTGTGTAAGGGTAGACCTAAAGGC
TACCAGCGTGAAGTATTTGTAGATGTTGCAGGTGAATTTGACCCAAAAAT
TGATTTGGTCCACTGAAAAAATATCCTGGAAGGAATTAACGTTTGGCTAC
CAACAATTCCCCCAAAAAAAGTCCCTTGAACAGGGAGGTTTGGAAAATTT
TATGAAGGAATCCTTGCTAAGGCCCCAAATTTCCTTGGAACCATTAATTG
ATTTTTAAAAGCCCGGGGGAAAAGCCTCTTTCCCCCCCCGAAATTAAAAA
TAAATAATTGTTCCCTTCCCCCAAAAATCTCATTACAAACACGATTTGGA
TTTTTCCCCCCCCCCCCCCCCCAACCCCCCCTCCCGTGGGGTTTCCCCCT
TTTTTTCTCCCAAAAAAATTTTGTGGGGGTTTGACCCCCCTCACACCCCC
CT
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