DY258378

Overview
NameDY258378
Unique NameDY258378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1310
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10336 contig Ccv1_Contig10336:347..1656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258378 vs. ExPASy Swiss-Prot
Match: NTCP_HUMAN (Sodium/bile acid cotransporter OS=Homo sapiens GN=SLC10A1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.219e-14
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 3
Query:  333 LGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLL 641
            L F+MLS+G T+ F   +  L  P  + +  +AQY I P+  FV+    +L    A  +++  C PGG  SNV +   KG++ LS++MTTCST  A+ M PLL
Sbjct:   35 LFFIMLSLGCTMEFSKIKAHLWKPKGLAIALVAQYGIMPLTAFVLGKVFRLKNIEALAILVCGCSPGGNLSNVFSLAMKGDMNLSIVMTTCSTFCALGMMPLL 137          
BLAST of DY258378 vs. ExPASy Swiss-Prot
Match: NTCP_RAT (Sodium/bile acid cotransporter OS=Rattus norvegicus GN=Slc10a1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.928e-13
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 3
Query:  318 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLL 641
            +  + L  +MLS+G T+ F   +  L  P  V V  +AQ+ I P+  F++     LS   A  +++  C PGG  SN+ T   KG++ LS++MTTCS+  A+ M PLL
Sbjct:   30 ILVLMLLLIMLSLGCTMEFSKIKAHLWKPKGVIVALVAQFGIMPLAAFLLGKIFHLSNIEALAILICGCSPGGNLSNLFTLAMKGDMNLSIVMTTCSSFSALGMMPLL 137          
BLAST of DY258378 vs. ExPASy Swiss-Prot
Match: NTCP_MOUSE (Sodium/bile acid cotransporter OS=Mus musculus GN=Slc10a1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.352e-12
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 3
Query:  318 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLL 641
            +  + L  +MLS+G T+ F   +     P  V +  +AQY I P+  F++     L++  A  +++  C PGG  SN+ T   KG++ LS++MTTCS+  A+ M PLL
Sbjct:   30 ILVVMLLLIMLSLGCTMEFSKIKAHFWKPKGVIIAIVAQYGIMPLSAFLLGKVFHLTSIEALAILICGCSPGGNLSNLFTLAMKGDMNLSIVMTTCSSFTALGMMPLL 137          
BLAST of DY258378 vs. ExPASy Swiss-Prot
Match: NTCP4_HUMAN (Sodium/bile acid cotransporter 4 OS=Homo sapiens GN=SLC10A4 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.145e-11
Identity = 35/98 (35.71%), Postives = 57/98 (58.16%), Query Frame = 3
Query:  345 MLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL 638
            ML +G T+    F   +R P    +  L Q+ + P+L F++A+  KL    A  ++L  CCPGG  SN+ + +  G++ LS++MT  ST+ A+V+ PL
Sbjct:  117 MLGLGCTVDVNHFGAHVRRPVGALLAALCQFGLLPLLAFLLALAFKLDEVAAVAVLLCGCCPGGNLSNLMSLLVDGDMNLSIIMTISSTLLALVLMPL 214          
BLAST of DY258378 vs. ExPASy Swiss-Prot
Match: NTCP4_RAT (Sodium/bile acid cotransporter 4 OS=Rattus norvegicus GN=Slc10a4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.495e-11
Identity = 40/125 (32.00%), Postives = 66/125 (52.80%), Query Frame = 3
Query:  345 MLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAG--------QLVPVDAAGLAI 695
            ML +G T+    F   +R P    +  L Q+   P+L F++A+  KL    A  ++L  CCPGG  SN+ + +  G++ LS++MT  ST+ A+V+ PL   + +         QL+P+ A  L +
Sbjct:  117 MLGLGCTVDVNHFGAHVRRPVGALLAALCQFGFLPLLAFLLALAFKLDEVAAVAVLLCGCCPGGNLSNLMSLLVDGDMNLSIIMTISSTLLALVLMPLCLWIYSRAWINTPLVQLLPLGAVTLTL 241          
BLAST of DY258378 vs. ExPASy Swiss-Prot
Match: NTCP4_MOUSE (Sodium/bile acid cotransporter 4 OS=Mus musculus GN=Slc10a4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.953e-11
Identity = 40/125 (32.00%), Postives = 66/125 (52.80%), Query Frame = 3
Query:  345 MLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAG--------QLVPVDAAGLAI 695
            ML +G T+    F   +R P    +  L Q+   P+L F++A+  KL    A  ++L  CCPGG  SN+ + +  G++ LS++MT  ST+ A+V+ PL   + +         QL+P+ A  L +
Sbjct:  117 MLGLGCTVDVNHFGAHVRRPVGALLAALCQFGFLPLLAFLLALIFKLDEVAAVAVLLCGCCPGGNLSNLMSLLVDGDMNLSIIMTISSTLLALVLMPLCLWIYSRAWINTPLVQLLPLGAVTLTL 241          
The following BLAST results are available for this feature:
BLAST of DY258378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
NTCP_HUMAN3.219e-1439.81Sodium/bile acid cotransporter OS=Homo sapiens GN=... [more]
NTCP_RAT7.928e-1337.04Sodium/bile acid cotransporter OS=Rattus norvegicu... [more]
NTCP_MOUSE1.352e-1235.19Sodium/bile acid cotransporter OS=Mus musculus GN=... [more]
NTCP4_HUMAN1.145e-1135.71Sodium/bile acid cotransporter 4 OS=Homo sapiens G... [more]
NTCP4_RAT1.495e-1132.00Sodium/bile acid cotransporter 4 OS=Rattus norvegi... [more]
NTCP4_MOUSE1.953e-1132.00Sodium/bile acid cotransporter 4 OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BG08FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258378 ID=DY258378; Name=DY258378; organism=Citrus clementina; type=EST; length=1310bp
CGCAAGCTCATCTGGATCTAAGAGGTGGATTATCAGCGATTGATCATGGA
AAAAGTTTGGCAATCGAAAGCAAGCCCCAAAATCACATTGTTGCTCTTGC
AGCTCCCTACTCAATCATTCAAAATTCAAGGTGCTCCCAAGTTTTGTGCA
AGGCAGCAGCAAATGTATCTGGAGATGTTCCAAGTAAATCTCCTGGTGGA
ATGAGCCAGTACGAGAAAATAATTGAAATTTTGACAACACTTTTTCCTGT
GTGGGTCATACTGGGCACCATTATTGGCATCTATAAGCCGAGTGCGGTAA
CATGGTTGGAGACAGACCTTTTCACTATTGGCTTGGGTTTTCTTATGCTT
TCAATGGGATTGACTCTGACCTTTGAAGATTTCAGAAGATGTTTGCGGAA
TCCATGGACTGTCGGTGTTGGATTTCTTGCTCAATATTTGATCAAACCTA
TGTTAGGCTTTGTAATTGCAATGACCCTAAAACTTTCCGCACCCCTTGCT
ACTGGTCTTATTTTGGTCTCATGCTGTCCTGGTGGTCAGGCTTCAAATGT
TGCTACCTATATATCTAAAGGAAATGTAGCACTTTCTGTTCTTATGACAA
CGTGTTCGACTATTGGAGCTATAGTCATGACTCCACTTCTAACTAAGCTT
CTAGCTGGTCAGCTTGTTCCTGTAGATGCTGCAGGGCTGGCTATCAGCAC
TTTTCAAGTCGTGTTAGTACCAACAGTTGTTGGGGTGTTGGCGAATGAAT
TCTTCCCAAAATTCACTTCAAAGATCATCTCCGTGACACCCTTATTTGGT
GTTATTCTTACACCCTTACTTGTGCCAGTCCTATTGGGCAAGTTCAGCTG
TCCTGAAAACTCAAGGAGCACAACTCATTTTTCCAGTGGCGCCTCTTCAT
GCTACTGCTTTTGCTCCTGGTTATTGGTTACAAAGATAACTTTTGGTGAA
ACCACTTCCCGTAACCAATCCAATCGAATGGGGGGAAGCCAAACTCCGCC
CCTTGGAATTTTACCTTGCCCAAAACAATTTCCCAAATCCCCTTGTTTTC
CTTCCCTTTCGGCGGTTAATGGTTGTCCGGCGGGGCCCTTTGGGGGGGAA
GGGCCCTTGCCCCGGGTTTTTGAGAGAAAACCCCCCACTTCTCCGGTTAA
AGAAAAAGGAAAAAACTTCCAAAAAAGAAAAACCCTCTAAAACCCCTTTT
TTCTATTTTCTTCCCCCCACCCCTTTTCATTCCCCCATACAAAAAAAAAA
TATCCCCCTCTTTTTTTATTTAATTTATTAAGAAAAACAATCATTTTTGT
TTTTTCTCCC
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