DY258382

Overview
NameDY258382
Unique NameDY258382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length815
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258382_ssr40 microsatellite DY258382_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1108 contig Ccv1_Contig1108:1..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDA1_CAEEL (Histone deacetylase 1 OS=Caenorhabditis elegans GN=hda-1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.803e-28
Identity = 65/164 (39.63%), Postives = 97/164 (59.15%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADE----DQEDGDERWDP--------DSDMDVDDERKSLPNRVKREAVEPEQKDREG 456
            +F RS+NVPL+++GGGGYT RNVARCW YET +A+  EV +++P ++Y+EYFGP+Y LH+  SN  N+NS  +L +++  ++  L +L   PSVQ +  P D+     D+    DQ + D+R  P        D     D ER+    R + +A    Q + EG
Sbjct:  290 RFFRSYNVPLMMVGGGGYTPRNVARCWTYETSIAVDKEVPNELPYNDYFEYFGPNYRLHIESSNAANENSSDMLAKLQTDVIANLEQLTFVPSVQMRPIPEDALSALNDDSLIADQANPDKRLPPQITDGMIQDDGDFYDGEREGDDRRNESDAKRAAQFESEG 453          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: PHD1_SCHPO (Histone deacetylase phd1 OS=Schizosaccharomyces pombe GN=phd1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.280e-27
Identity = 61/129 (47.29%), Postives = 86/129 (66.67%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHE-YYEYFGPDYTLHV-APSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDV 381
            +F RSFN+P+L++GGGGYT+RNVAR WCYET + +  ++  ++P+   YYE+F PDYTLH    + +ENKN+ + LE++R + LE L  L  APSVQ Q+ PPD      +ED+   DE  D   D+ V
Sbjct:  304 RFTRSFNIPMLVVGGGGYTLRNVARAWCYETSICVNEQIPSELPRETLYYEFFAPDYTLHPRLTTKIENKNTPKALEDLRIRALEQLRYLGGAPSVQMQQIPPDLTGHLEEEDERLNDEYLDKAVDVRV 432          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: RPD3_YEAST (Histone deacetylase RPD3 OS=Saccharomyces cerevisiae GN=RPD3 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.084e-26
Identity = 56/135 (41.48%), Postives = 88/135 (65.19%), Query Frame = 1
Query:    4 FMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSE-LPEADEDQED-----GDERWDPDSDMDVDDE 390
            +++SF +P++++GGGGYT+RNVAR WC+ETG+   V +D  +P +EYYEY+GPDY L V PSNM N N+ + L+++   +   L   ++APSVQ    P D+E L + +ED  +     G  ++  D  ++ D+E
Sbjct:  297 YVKSFGIPMMVVGGGGYTMRNVARTWCFETGLLNNVVLDKDLPYNEYYEYYGPDYKLSVRPSNMFNVNTPEYLDKVMTNIFANLENTKYAPSVQLNHTPRDAEDLGDVEEDSAEAKDTKGGSQYARDLHVEHDNE 431          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDA12_DICDI (Histone deacetylase B OS=Dictyostelium discoideum GN=hdaB PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.153e-26
Identity = 59/124 (47.58%), Postives = 82/124 (66.13%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTL----HVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWD 360
            +F++SFN+P L+LGGGGYT+RNVARCW YET V +  EV++++P ++Y +++ PD+ L       P   EN N++  LE +R K+LE L  LQ APSVQ Q+ PPD    + D D ED  E  D
Sbjct:  290 RFVKSFNIPTLVLGGGGYTVRNVARCWTYETSVCVDTEVNNELPYNDYIQFYSPDFQLIPDYTGLPFKYENANTKSYLESLRIKILENLRILQWAPSVQIQDVPPDIMPIDFDRD-EDSKENMD 412          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDA10_ARATH (Putative histone deacetylase 10 OS=Arabidopsis thaliana GN=HDA10 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.325e-24
Identity = 52/118 (44.07%), Postives = 79/118 (66.95%), Query Frame = 1
Query:   46 GGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDP---DSDMDVDDE 390
            GGYT  NVARCW  ETG+ L  E+ +++P+++Y +YF PD++L +   ++EN N++  +  I+ ++LE L  +QHAPSVQ QE PPD  +P+ DED+++ D R D    D  +  DDE
Sbjct:   14 GGYTKENVARCWTVETGILLDTELPNEIPENDYIKYFAPDFSLKIPGGHIENLNTKSYISSIKVQILENLRYIQHAPSVQMQEVPPDFYIPDFDEDEQNPDVRVDQRSRDKQIQRDDE 131          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HOS2_YEAST (Probable histone deacetylase HOS2 OS=Saccharomyces cerevisiae GN=HOS2 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.189e-19
Identity = 51/129 (39.53%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQH-EYYEYFGPDYTLHVAPSNM-ENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQ-ERPPDSELPEADEDQEDGDERWDPDSDMD 378
            KF++SF +P+L++GGGGYT RNV+R W YETG+   V + + +P+   + + FGPDY+L+    ++ ENKNS++LLE+IR + LE +  LQ APSV+   E  P  ++    E+++   +  + +++ D
Sbjct:  305 KFVKSFGLPMLVVGGGGYTPRNVSRLWTYETGILNDVLLPEDIPEDIPFRDSFGPDYSLYPMLDDLYENKNSKKLLEDIRIRCLENIRYLQGAPSVRMDAECIPTQDISALTEEEDKIIQEMNEETEAD 433          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDA2_CAEEL (Putative histone deacetylase 2 OS=Caenorhabditis elegans GN=hda-2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.017e-16
Identity = 55/150 (36.67%), Postives = 80/150 (53.33%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYY-EYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDVDDERKSLPNRVKREA-VEPEQK 444
            K+++S   PL++LGGGGYT+RNVARCW  ETGV LG+ +DD++P    Y  YF P          M + NS   L  I  + L  L  ++ APSVQ Q       L E ++ +E  +ER    S   ++ E   +  +++ E  VE + K
Sbjct:  307 KYVKSLGKPLMVLGGGGYTLRNVARCWALETGVILGLRMDDEIPGTSLYSHYFTPRLLRPNLVPKMNDANSAAYLASIEKETLACLRMIRGAPSVQMQ-NIVGIRLDEIEQIEE--NERLQKSSKSSIEYEVGKVSEKMEEECFVEEDSK 453          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDAC8_DANRE (Histone deacetylase 8 OS=Danio rerio GN=hdac8 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.271e-15
Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    4 FMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEI 231
            ++  + +P LLLGGGGY + N ARCW Y TG  LG  +  ++P HE++  +GPDY+L ++PS   ++N  Q LE +
Sbjct:  291 YILGWELPTLLLGGGGYNLANTARCWTYLTGTVLGQTLSSEIPDHEFFTEYGPDYSLEISPSCRPDRNESQHLERV 366          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDAC8_XENTR (Histone deacetylase 8 OS=Xenopus tropicalis GN=hdac8 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.623e-14
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKL 264
            K++  + +P L+LGGGGY + N ARCW Y T + +G  +  ++P HE++  +GPDY L V PS   ++N  Q ++EI   +  +L ++
Sbjct:  281 KYVLQWQLPTLILGGGGYHLPNTARCWTYLTALIVGRTLSSEIPDHEFFTEYGPDYVLEVTPSCRPDRNDSQKVQEILQSIKGHLKQV 368          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDAC8_RAT (Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac8 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.120e-14
Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRN 237
            K++  + +  L+LGGGGY + N ARCW Y TGV LG  +  ++P HE++  +GPDY L + PS   ++N    +++I N
Sbjct:  289 KYVLQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILN 367          
The following BLAST results are available for this feature:
BLAST of DY258382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
HDA1_CAEEL9.803e-2839.63Histone deacetylase 1 OS=Caenorhabditis elegans GN... [more]
PHD1_SCHPO1.280e-2747.29Histone deacetylase phd1 OS=Schizosaccharomyces po... [more]
RPD3_YEAST1.084e-2641.48Histone deacetylase RPD3 OS=Saccharomyces cerevisi... [more]
HDA12_DICDI3.153e-2647.58Histone deacetylase B OS=Dictyostelium discoideum ... [more]
HDA10_ARATH1.325e-2444.07Putative histone deacetylase 10 OS=Arabidopsis tha... [more]
HOS2_YEAST2.189e-1939.53Probable histone deacetylase HOS2 OS=Saccharomyces... [more]
HDA2_CAEEL1.017e-1636.67Putative histone deacetylase 2 OS=Caenorhabditis e... [more]
HDAC8_DANRE3.271e-1543.42Histone deacetylase 8 OS=Danio rerio GN=hdac8 PE=2... [more]
HDAC8_XENTR1.623e-1437.50Histone deacetylase 8 OS=Xenopus tropicalis GN=hda... [more]
HDAC8_RAT2.120e-1440.51Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BH08FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258382 ID=DY258382; Name=DY258382; organism=Citrus clementina; type=EST; length=815bp
AAATTTATGAGATCATTCAATGTGCCTCTGTTGCTGCTGGGTGGTGGTGG
TTACACTATTCGGAATGTTGCTCGTTGCTGGTGCTACGAGACAGGAGTTG
CACTTGGAGTAGAGGTTGATGACAAGATGCCACAGCATGAGTATTATGAG
TATTTTGGTCCTGACTATACTCTTCATGTTGCTCCCAGTAACATGGAGAA
TAAGAATTCGCGCCAGTTGCTTGAGGAAATAAGGAATAAGCTTCTCGAAT
ATCTCTCAAAGCTTCAACATGCACCCAGTGTCCAGTTTCAGGAAAGACCA
CCTGATTCTGAACTTCCAGAGGCGGATGAAGATCAGGAGGATGGCGATGA
GAGATGGGATCCAGATTCTGACATGGATGTTGATGATGAACGAAAGTCCC
TACCAAACAGAGTTAAGAGAGAAGCAGTTGAACCTGAGCAAAAAGATCGG
GAGGGCCTTAAAGGAATGGCCGAGCAAGCTAGAGGCTTCGACATGATTGC
AGACGATTCTATAAGCACAAAGGTTTTAGATATGAGTTCAATGCCAATTG
ATGAACCGAGCATCAAAGTTGAACAAGAAAACATGAGCAAGGCATCTGAT
CACATGTACCCGCATTCGTAACTAAACTTTATCTCAGCATCGACATCTGC
TATACGAATTATGTGTTTTAGACATGAAAACCTGATTGGTTGTTCCAAAC
ATCGCTTTCCAAGTTATATTTCTCCCATCAGTCTAATGTATTGAAGTATA
AAACTTCTGTCCTAGCAAAATGTCAAACTTATTTTCTTTGATATTTATCC
TCGTGCTTTGGCCGC
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