DY258382
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDA1_CAEEL (Histone deacetylase 1 OS=Caenorhabditis elegans GN=hda-1 PE=1 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 9.803e-28 Identity = 65/164 (39.63%), Postives = 97/164 (59.15%), Query Frame = 1 Query: 1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADE----DQEDGDERWDP--------DSDMDVDDERKSLPNRVKREAVEPEQKDREG 456 +F RS+NVPL+++GGGGYT RNVARCW YET +A+ EV +++P ++Y+EYFGP+Y LH+ SN N+NS +L +++ ++ L +L PSVQ + P D+ D+ DQ + D+R P D D ER+ R + +A Q + EG Sbjct: 290 RFFRSYNVPLMMVGGGGYTPRNVARCWTYETSIAVDKEVPNELPYNDYFEYFGPNYRLHIESSNAANENSSDMLAKLQTDVIANLEQLTFVPSVQMRPIPEDALSALNDDSLIADQANPDKRLPPQITDGMIQDDGDFYDGEREGDDRRNESDAKRAAQFESEG 453
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: PHD1_SCHPO (Histone deacetylase phd1 OS=Schizosaccharomyces pombe GN=phd1 PE=1 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.280e-27 Identity = 61/129 (47.29%), Postives = 86/129 (66.67%), Query Frame = 1 Query: 1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHE-YYEYFGPDYTLHV-APSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDV 381 +F RSFN+P+L++GGGGYT+RNVAR WCYET + + ++ ++P+ YYE+F PDYTLH + +ENKN+ + LE++R + LE L L APSVQ Q+ PPD +ED+ DE D D+ V Sbjct: 304 RFTRSFNIPMLVVGGGGYTLRNVARAWCYETSICVNEQIPSELPRETLYYEFFAPDYTLHPRLTTKIENKNTPKALEDLRIRALEQLRYLGGAPSVQMQQIPPDLTGHLEEEDERLNDEYLDKAVDVRV 432
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: RPD3_YEAST (Histone deacetylase RPD3 OS=Saccharomyces cerevisiae GN=RPD3 PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.084e-26 Identity = 56/135 (41.48%), Postives = 88/135 (65.19%), Query Frame = 1 Query: 4 FMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSE-LPEADEDQED-----GDERWDPDSDMDVDDE 390 +++SF +P++++GGGGYT+RNVAR WC+ETG+ V +D +P +EYYEY+GPDY L V PSNM N N+ + L+++ + L ++APSVQ P D+E L + +ED + G ++ D ++ D+E Sbjct: 297 YVKSFGIPMMVVGGGGYTMRNVARTWCFETGLLNNVVLDKDLPYNEYYEYYGPDYKLSVRPSNMFNVNTPEYLDKVMTNIFANLENTKYAPSVQLNHTPRDAEDLGDVEEDSAEAKDTKGGSQYARDLHVEHDNE 431
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDA12_DICDI (Histone deacetylase B OS=Dictyostelium discoideum GN=hdaB PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.153e-26 Identity = 59/124 (47.58%), Postives = 82/124 (66.13%), Query Frame = 1 Query: 1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTL----HVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWD 360 +F++SFN+P L+LGGGGYT+RNVARCW YET V + EV++++P ++Y +++ PD+ L P EN N++ LE +R K+LE L LQ APSVQ Q+ PPD + D D ED E D Sbjct: 290 RFVKSFNIPTLVLGGGGYTVRNVARCWTYETSVCVDTEVNNELPYNDYIQFYSPDFQLIPDYTGLPFKYENANTKSYLESLRIKILENLRILQWAPSVQIQDVPPDIMPIDFDRD-EDSKENMD 412
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDA10_ARATH (Putative histone deacetylase 10 OS=Arabidopsis thaliana GN=HDA10 PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.325e-24 Identity = 52/118 (44.07%), Postives = 79/118 (66.95%), Query Frame = 1 Query: 46 GGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDP---DSDMDVDDE 390 GGYT NVARCW ETG+ L E+ +++P+++Y +YF PD++L + ++EN N++ + I+ ++LE L +QHAPSVQ QE PPD +P+ DED+++ D R D D + DDE Sbjct: 14 GGYTKENVARCWTVETGILLDTELPNEIPENDYIKYFAPDFSLKIPGGHIENLNTKSYISSIKVQILENLRYIQHAPSVQMQEVPPDFYIPDFDEDEQNPDVRVDQRSRDKQIQRDDE 131
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HOS2_YEAST (Probable histone deacetylase HOS2 OS=Saccharomyces cerevisiae GN=HOS2 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.189e-19 Identity = 51/129 (39.53%), Postives = 85/129 (65.89%), Query Frame = 1 Query: 1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQH-EYYEYFGPDYTLHVAPSNM-ENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQ-ERPPDSELPEADEDQEDGDERWDPDSDMD 378 KF++SF +P+L++GGGGYT RNV+R W YETG+ V + + +P+ + + FGPDY+L+ ++ ENKNS++LLE+IR + LE + LQ APSV+ E P ++ E+++ + + +++ D Sbjct: 305 KFVKSFGLPMLVVGGGGYTPRNVSRLWTYETGILNDVLLPEDIPEDIPFRDSFGPDYSLYPMLDDLYENKNSKKLLEDIRIRCLENIRYLQGAPSVRMDAECIPTQDISALTEEEDKIIQEMNEETEAD 433
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDA2_CAEEL (Putative histone deacetylase 2 OS=Caenorhabditis elegans GN=hda-2 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.017e-16 Identity = 55/150 (36.67%), Postives = 80/150 (53.33%), Query Frame = 1 Query: 1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYY-EYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDVDDERKSLPNRVKREA-VEPEQK 444 K+++S PL++LGGGGYT+RNVARCW ETGV LG+ +DD++P Y YF P M + NS L I + L L ++ APSVQ Q L E ++ +E +ER S ++ E + +++ E VE + K Sbjct: 307 KYVKSLGKPLMVLGGGGYTLRNVARCWALETGVILGLRMDDEIPGTSLYSHYFTPRLLRPNLVPKMNDANSAAYLASIEKETLACLRMIRGAPSVQMQ-NIVGIRLDEIEQIEE--NERLQKSSKSSIEYEVGKVSEKMEEECFVEEDSK 453
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDAC8_DANRE (Histone deacetylase 8 OS=Danio rerio GN=hdac8 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.271e-15 Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 1 Query: 4 FMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEI 231 ++ + +P LLLGGGGY + N ARCW Y TG LG + ++P HE++ +GPDY+L ++PS ++N Q LE + Sbjct: 291 YILGWELPTLLLGGGGYNLANTARCWTYLTGTVLGQTLSSEIPDHEFFTEYGPDYSLEISPSCRPDRNESQHLERV 366
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDAC8_XENTR (Histone deacetylase 8 OS=Xenopus tropicalis GN=hdac8 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.623e-14 Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 1 Query: 1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKL 264 K++ + +P L+LGGGGY + N ARCW Y T + +G + ++P HE++ +GPDY L V PS ++N Q ++EI + +L ++ Sbjct: 281 KYVLQWQLPTLILGGGGYHLPNTARCWTYLTALIVGRTLSSEIPDHEFFTEYGPDYVLEVTPSCRPDRNDSQKVQEILQSIKGHLKQV 368
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDAC8_RAT (Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac8 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.120e-14 Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRN 237 K++ + + L+LGGGGY + N ARCW Y TGV LG + ++P HE++ +GPDY L + PS ++N +++I N Sbjct: 289 KYVLQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILN 367 The following BLAST results are available for this feature:
BLAST of DY258382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 44
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Sequences
The
following sequences are available for this feature:
EST sequence >DY258382 ID=DY258382; Name=DY258382; organism=Citrus clementina; type=EST; length=815bpback to top |