DY258401
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258401 vs. ExPASy Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.310e-11 Identity = 50/192 (26.04%), Postives = 93/192 (48.44%), Query Frame = 1 Query: 67 YFKAGEPSEALVLQDEVLDSIIEVTVVTFCVLIDGLCKNGLVREAIDYFGRLPDFGLRPNVAVYTALIDGLCKKNCIERARNLFDEMLKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKLYERGNMDEAIELHNEM 642 Y K G+ + A +L D++ ++ + +I G KNG REAID F + + +RP+ T+ I + +E+AR++++ + + D D +ALID + K S + A + +R +D D+ +++++ G G +EA L+ M G+ P+++ + LL G + E N M Sbjct: 267 YAKCGQVATAKILFDKMKSP----NLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRT----LDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRM 450
BLAST of DY258401 vs. ExPASy Swiss-Prot
Match: PP146_ARATH (Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 4.323e-11 Identity = 54/205 (26.34%), Postives = 91/205 (44.39%), Query Frame = 1 Query: 55 LMDAYFKAGEPSEALVLQDEVLDSIIEVTVVTFCVLIDGLCKNGLVREAIDYFGRLPDFGLRPNVAVYTALIDGLCKKNCIERARNLFDEMLKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKLYERGNMDEAIELHNEMMGRGLLSGS 669 L+D Y K G+ S A V + V +V + +I G NG V EA+ F ++ ++PN +++ G +E R++ +K I DT AL+ Y K ++A + E+ + D+ A+ S++ G S+ G + EA LFH M + P+ + SL G++ LH + G L+ S Sbjct: 283 LLDMYVKCGDISNAR----RVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVG-IWDTNVANALVHMYAKCYQNRDA----KYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASS 478
BLAST of DY258401 vs. ExPASy Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 5.646e-11 Identity = 52/198 (26.26%), Postives = 98/198 (49.49%), Query Frame = 1 Query: 55 LMDAYFKAGEPSEALVLQDEV-LDSIIEVTVVTFCVLIDGLCKNGLVREAIDYFGRLPDFGLRPNVAVYTALIDGLCKKNCIERARNLFDEMLKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR-GILPDEILCISLLKKLYERGNMDEAIELHNEM 642 L+ AY + G+P+EAL++ E+ L +++ +T + + G + + G+R N V +ALI K +E++R +F+ + KRD+ ++A+I G H EA+++ +M E V + +T++ S G + EA LFH+M GI+P+E ++ L G +++A++ M Sbjct: 335 LISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVF----VWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAM 528
BLAST of DY258401 vs. ExPASy Swiss-Prot
Match: PP155_ARATH (Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana GN=At2g15980 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 5.646e-11 Identity = 55/213 (25.82%), Postives = 96/213 (45.07%), Query Frame = 1 Query: 55 LMDAYFKAGEPSEALVLQDEVLDSI-IEVTVVTFCVLIDGLCKNGLVREAIDYFGRLPDFGLRPNVAVYTALIDGLCKKNCIERARNLFDEMLKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGL--SRCG-HLQEARVLFHEMIGRGILPDEILCISLL-KKLYERGNMDEAIELHNEMMGRGLLSGS*TY 678 +M ++++ GE + E+ + + V ++ VL++ C GL+ EA + + G+ ++ Y +I GLC + +A+ LF +M + + Y L++GY K L + M G + D +LV GL R G + EA + + + + C LL K+L E G MD A+ + EM+G+G TY Sbjct: 251 MMVSFYREGETEMVERIWREMEEEVGCSPNVYSYNVLMEAYCARGLMSEAEKVWEEMKVRGVVYDIVAYNTMIGGLCSNFEVVKAKELFRDMGLKGIECTCLTYEHLVNGYCKAGDVDSGLVVYREMKRKGFEADGLTIEALVEGLCDDRDGQRVVEAADIVKDAVREAMFYPSRNCYELLVKRLCEDGKMDRALNIQAEMVGKGFKPSQETY 463
BLAST of DY258401 vs. ExPASy Swiss-Prot
Match: PTCD1_MOUSE (Pentatricopeptide repeat-containing protein 1 OS=Mus musculus GN=Ptcd1 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 7.374e-11 Identity = 49/170 (28.82%), Postives = 87/170 (51.18%), Query Frame = 1 Query: 172 LCKNGLVREAIDYFGR--LPDFGLRPNVAVYTALIDGLCKKNCIERARNLFDEMLKRDMIPDTTAYTALI----DGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRG-ILPDEILCISLLKKLYE-RGNMDEAIELHNEMMGRGL 657 L K G + EA+D F R L + L+P YT LI G + +++A LF++M KRD+ P YTAL + K + + AL L+ ++ L+L Y +L+ ++C L+ +F E+I RG + +E C L+ + + + +A+++ +M+ G+ Sbjct: 144 LIKEGKLAEALDLFERQMLKEERLQPLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLRQQLQARNFQLNLKTYHALLKVAAKCADLRLCLDVFKEIIQRGHAVTEETFCFLLVGCIQDKKTGFRQAMQVWRQMLSLGI 313
BLAST of DY258401 vs. ExPASy Swiss-Prot
Match: PP379_ARATH (Pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Arabidopsis thaliana GN=At5g13770 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 7.374e-11 Identity = 47/197 (23.86%), Postives = 85/197 (43.15%), Query Frame = 1 Query: 67 YFKAGEPSEALVLQDEVLDSIIEVTVVTFCVLIDGLCKNGLVREAIDYFGRLPDFGLRPNVAVYTALIDGLCKKNCIERARNLFDEMLKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKLYERGNMDEAIELHNEM-MGRG 654 Y + G L + + + ++VT C +++G K EA+ + Y I+ C+ +A LFDEM+K+ AY+ ++D Y K +A+ L +M + G ++ Y SL+ R L+ A ++ EM +LPD++ S++ ++ +EL+ E M RG Sbjct: 328 YVREGNMETTLEVVAAMRKAELKVTDCILCAIVNGFSKQRGFAEAVKVYEWAMKEECEAGQVTYAIAINAYCRLEKYNKAEMLFDEMVKKGFDKCVVAYSNIMDMYGKTRRLSDAVRLMAKMKQRGCKPNIWIYNSLIDMHGRAMDLRRAEKIWKEMKRAKVLPDKVSYTSMISAYNRSKELERCVELYQEFRMNRG 524
BLAST of DY258401 vs. ExPASy Swiss-Prot
Match: PP297_ARATH (Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 7.374e-11 Identity = 52/201 (25.87%), Postives = 97/201 (48.26%), Query Frame = 1 Query: 55 LMDAYFKAGEPSEALVLQDEVLDSIIEVTVVTFCVLIDGLCKNGLVREAIDYFGRLPDFGLRPNVAVYTALIDGLCKKNCIERARNLFDEMLKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKLYERGNMDEAIELHNEMMGRGL 657 ++ +Y K G +A+ L DE+ ++ +VT+ L+ G GL ++AI R+ GL+P+ + ++L+ + + ++ + + +L+ + D T LID Y+K A + + M ++ A+ SLV GLS L++A L M GI PD I SL G ++A+++ +M +G+ Sbjct: 161 ILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDA----KNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGV 357
BLAST of DY258401 vs. ExPASy Swiss-Prot
Match: PP287_ARATH (Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 7.374e-11 Identity = 47/192 (24.48%), Postives = 87/192 (45.31%), Query Frame = 1 Query: 55 LMDAYFKAGEPSEALVLQDEVLDSIIEVTVVTFCVLIDGLCKNGLVREAIDYFGRLPDFGLRPNVAVYTALIDGLCKKNCIERARNLFDEMLKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKLYERGNMDEAIEL 630 L+ AY +A EAL + +E+LD+ + T + +L+D +G+V +A F + + P++ YT ++ + +E A F + P+ Y LI GY K ++ + + +M G+ + T+++ RC + A + EM G+ PD+ LL + ++EA EL Sbjct: 320 LIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEAKEL 511 HSP 2 Score: 68.5514 bits (166), Expect = 9.630e-11 Identity = 41/189 (21.69%), Postives = 87/189 (46.03%), Query Frame = 1 Query: 91 EALVLQDEVLDSIIEVTVVTFCVLIDGLCKNGLVREAIDYFGRLPDFGLRPNVAVYTALIDGLCKKNCIERARNLFDEMLKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKLYERGNMDEAIELHNEMMGRGL 657 E + D++ S I+ VV++ +LI + EA+ F + D G+RP Y L+D +E+A+ +F M + + PD +YT ++ Y+ + A R+ G + ++ Y +L+ G ++ +++ ++ +M GI ++ + +++ N A+ + EM G+ Sbjct: 297 EVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGV 485
BLAST of DY258401 vs. ExPASy Swiss-Prot
Match: PP215_ARATH (Pentatricopeptide repeat-containing protein At3g05340 OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 7.374e-11 Identity = 54/196 (27.55%), Postives = 91/196 (46.43%), Query Frame = 1 Query: 55 LMDAYFKAGEPSEALVLQDEVLDSIIEVTVVTFCVLIDGLCKNGLVREAIDYFGRLPDFGLRPNVAVYTALIDGLCKKNCIERARNLFDEMLKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKLYERGNMDEAIELHNEM 642 LMD Y K G +A + +S EV V+ V++ GL +NG EAI +F R+ G+ + V +A++ N + + L ++KR +T LI+ Y K ++ + RM + + ++ S++ +R GH A L+ EM + P ++ +SLL G +D+ EL NEM Sbjct: 297 LMDMYSKCGSIEDAWT----IFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPK----RNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEM 484 The following BLAST results are available for this feature:
BLAST of DY258401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 169
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Sequences
The
following sequences are available for this feature:
EST sequence >DY258401 ID=DY258401; Name=DY258401; organism=Citrus clementina; type=EST; length=1303bpback to top |