DY258402

Overview
NameDY258402
Unique NameDY258402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1114 contig Ccv1_Contig1114:1..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258402 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 2.936e-63
Identity = 111/242 (45.87%), Postives = 160/242 (66.12%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKND-GGLTGKGIPNSISI 723
            +L +DYPY  DGL VW AI  W  +Y +I+Y +D  ++ D E+QAWWKE+REVGHGD ++A+WW EM +   L++A   +IW  SALHA+VNFGQY YAGY PNRP++ R+ +P+ GT E+ EL  D +K +++ + ++    +  +L+E+LS+H+SDEVYLGQR + EWT D                   ++V  N++   KNR GP    Y L++P+TS++K D  GL+ +GIPNSISI
Sbjct:  629 LLIEDYPYANDGLAVWHAIEQWATEYLAIYYPNDGVLQGDAELQAWWKEVREVGHGDIKDATWWPEMKTVAELVKACATIIWIGSALHAAVNFGQYPYAGYLPNRPSVSRRPMPEPGTKEYDELARDPEKVFVRTITKQMQAIVGISLLEILSKHSSDEVYLGQRDTPEWTSDAKALEAFKRFGARLTEIESRVVAMNKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870          
BLAST of DY258402 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 3.835e-63
Identity = 116/242 (47.93%), Postives = 157/242 (64.88%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKN-DGGLTGKGIPNSISI 723
            +L  DYPY  DGL +W AI  +V +Y +I+Y +D  ++ D E+QAWWKE REVGHGD ++A WW +M S   L +A T +IW  SALHA+VNFGQY YAG+ PNRPT+ R+ +P+ GT E+AEL  D ++ ++  +  +    +  +L+EVLS+H+SDE+YLGQR + EWT D                   K+V  N +  LKNR GPAK  Y L++P+TS+ K    GLT KGIPNSISI
Sbjct:  621 LLVSDYPYAADGLAIWHAIEQYVSEYLAIYYPNDGVLQGDTEVQAWWKETREVGHGDLKDAPWWPKMQSVPELAKACTTIIWIGSALHAAVNFGQYPYAGFLPNRPTVSRRRMPEPGTEEYAELERDPERAFIHTITSQIQTIIGVSLLEVLSKHSSDELYLGQRDTPEWTSDPKALEVFKRFSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862          
BLAST of DY258402 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.541e-63
Identity = 108/241 (44.81%), Postives = 154/241 (63.90%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            +L +DYPY +DGL++W AI TWV++Y S++Y  DD VK D E+Q WWKE  E GHGD ++  WW ++ + + L++  TI+IWT+SALHA+VNFGQY Y G+  NRPT  R+ +P++GT E+ E++    K YL+ +  +F   +  +++E+LSRH SDEVYLGQR +  WT D                  +K+  +N +  L NR GP ++ Y L+HP      N  GLT +GIPNSISI
Sbjct:  631 LLIEDYPYAVDGLEIWAAIKTWVQEYVSLYYARDDDVKPDSELQQWWKEAVEKGHGDLKDKPWWPKLQTIEELVEICTIIIWTASALHAAVNFGQYPYGGFILNRPTSSRRLLPEKGTPEYEEMVKSHQKAYLRTITSKFQTLVDLSVIEILSRHASDEVYLGQRDNPHWTSDSKALQAFQKFGNKLKEIEEKLARKNNDQSLSNRLGPVQLPYTLLHP------NSEGLTCRGIPNSISI 865          
BLAST of DY258402 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.486e-62
Identity = 111/242 (45.87%), Postives = 161/242 (66.53%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQR-QSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            +L +DYPY  DGL++W AI +WV++Y + +YK D ++  D E+QA+WKE+ EVGHGD ++A+WWF+M +R  LI+A +ILIW +SALHA+VNFGQY Y GY  NRPT  RKF+P++GT E+ +L  + +K YL+ +  +        ++EVLSRH SDE YLG+R +  +WT D                  +K+ +RN +  L+NR+GP K+ Y L++P      ++ GLT +GIPNSISI
Sbjct:  630 LLIEDYPYASDGLEIWAAIKSWVEEYVNFYYKSDAAIAQDAELQAFWKELVEVGHGDLKSATWWFKMQNRKELIEACSILIWIASALHAAVNFGQYPYGGYILNRPTKSRKFMPEKGTPEYDDLAKNYEKAYLRTITPKNDTLTDLTIIEVLSRHASDEQYLGERIEGDDWTTDSVPKEAFKRFGKKLAEIEEKLTQRNNDESLRNRYGPVKMPYTLLYP-----SSEEGLTCRGIPNSISI 866          
BLAST of DY258402 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.537e-62
Identity = 110/241 (45.64%), Postives = 158/241 (65.56%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            ++ +DYPY +DGL++W AI TWV +Y S++Y  D +V+ D E+QAWWKE  E GHGD +   WW +M + ++LIQ+ +I++WT+SALHA+VNFGQY Y G   NRPTL R+FIP EGT E+ E++ +  K YL+ +  +F   +  +++E+LSRH SDE+YLG+R++  WT D+                  KI  RN +  L+NR GP ++ Y L+H       ++ GLT KGIPNSISI
Sbjct:  629 LVIEDYPYAVDGLEIWDAIKTWVHEYVSLYYPTDAAVQQDTELQAWWKEAVEKGHGDLKEKPWWPKMQTTEDLIQSCSIIVWTASALHAAVNFGQYPYGGLILNRPTLARRFIPAEGTPEYDEMVKNPQKAYLRTITPKFETLIDLSVIEILSRHASDEIYLGERETPNWTTDKKALEAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLLHR-----SSEEGLTFKGIPNSISI 864          
BLAST of DY258402 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.537e-62
Identity = 111/241 (46.06%), Postives = 153/241 (63.49%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            +L  DYPY +DGL++W AI +WV +YC  +YK D++V+ D E+QAWWKE+RE GHGDK++ +WW ++ +R  L    TI+IW +SALHA+++FG Y+YAGY PNRPTL    +P+ G+ E+ EL  + DK +LK    +    L  ++ EV SRH SDEVYLGQR S EWT D+                  +I+  N +   KNR GP  + Y L+ P      ++ GLTGKGIPNS+SI
Sbjct:  624 LLILDYPYAVDGLEIWAAIKSWVTEYCKFYYKSDETVEKDTELQAWWKELREEGHGDKKDEAWWPKLQTRQELRDCCTIIIWIASALHAALHFGLYSYAGYLPNRPTLSCNLMPEPGSVEYEELKTNPDKVFLKTFVPQLQSLLEISIFEVSSRHASDEVYLGQRDSIEWTKDKEPLVAFERFGKMLSDIENRIMIMNSHKSWKNRSGPVNVPYTLLFP-----TSEEGLTGKGIPNSVSI 859          
BLAST of DY258402 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.234e-61
Identity = 108/242 (44.63%), Postives = 161/242 (66.53%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSE-WTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            +L +DYPY  DGL++W AI +WV++Y S +YK D+ ++ D E+QAWWKE+ EVGHGD ++  WW +M +R+ L++A  ILIW +SALHA+VNFGQY Y G   NRPT+ R+F+P++G+ E+  L  + +K +LK +  +    +   ++E+LSRH SDE YLGQR   + WT D                  +K++E+N++  L+NR+GPAK+ Y L++P      ++ GLT +GIPNSISI
Sbjct:  617 LLIEDYPYASDGLEIWDAIKSWVQEYVSFYYKSDEELQKDPELQAWWKELVEVGHGDLKDKPWWQKMQTREELVEASAILIWIASALHAAVNFGQYPYGGLILNRPTISRRFMPEKGSPEYDALAKNPEKEFLKTITGKKETLIDLTVIEILSRHASDEFYLGQRDGGDYWTSDAGPLEAFKRFGKKLEEIEKKLIEKNKDETLRNRYGPAKMPYTLLYP-----SSEEGLTFRGIPNSISI 853          
BLAST of DY258402 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.996e-61
Identity = 108/241 (44.81%), Postives = 157/241 (65.15%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            ++ +DYPY +DGL++W  I TWVKDY S++Y  +D+VK D E+QAWWKE  E GHGD ++  WW ++N+  +LI   +I+IW +SALHA+VNFGQY Y G+  NRPT+ R+ +P+ GT E+ EL  +  K YL+ +  +    +  +++E+LSRH SDEVYLGQR +  WT++                  +KI+ RN+++ L+NR GP K+ Y ++ P       D GLT +GIPNSISI
Sbjct:  626 LVVEDYPYAVDGLEIWDTIQTWVKDYVSLYYPTNDAVKKDTELQAWWKEAVEKGHGDLKDKPWWPKLNTPQDLIHTCSIIIWIASALHAAVNFGQYPYGGFILNRPTITRRLLPEPGTKEYGELTSNYQKAYLRTITGKVEAIVDLSVIEILSRHASDEVYLGQRDNPNWTNNIKALQAFKRFGQKLKEIEEKIMGRNKDSSLRNRNGPVKMPYTVLLPTC----EDEGLTFRGIPNSISI 862          
BLAST of DY258402 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 3.359e-59
Identity = 104/242 (42.98%), Postives = 155/242 (64.05%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLK-NRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            +L +DYPY  DGL++W AI TWV++Y  ++Y  DD VK+D E+Q WWKE  E GHGD ++  WW ++ + ++L++   I+IW +SALHA+VNFGQY Y G   NRPT  R+ +P++GT E+ E++ + +K YL+ +  +    +S +++E+LS H SDEVYLGQR +  WT D                  +K+V RN +  L+ NR GP ++ Y L++P      ++ GLT +GIPNSISI
Sbjct:  603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKDKPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYP-----SSEEGLTFRGIPNSISI 839          
BLAST of DY258402 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.107e-57
Identity = 100/236 (42.37%), Postives = 154/236 (65.25%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSE-WTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGI 705
            ++ +DYPY  DGL++W AI +WV +Y + +YK D+ ++ D E+QAWWKE+ +VGHGD ++  WW +M SR+NL++  T LIW +SALHA+VNFGQY Y G   NRPT+ R+F+P++G+ E+A L  + +K +LK +  +    +   ++E+LSRH SDE+YLG+R   + WT D                  +K+V++N +  L+NR GPAK+ Y L++P      ++ GLT +GI
Sbjct:  511 LVIEDYPYASDGLEIWDAIKSWVVEYVAFYYKSDEVLQQDSELQAWWKELVQVGHGDLKDKPWWPKMQSRENLVEVSTTLIWIASALHAAVNFGQYPYGGLILNRPTISRRFMPEKGSAEYAALAKNPEKEFLKTITGKKETLIDLTVIEILSRHASDEIYLGERDGGDHWTSDAGPLEAFKRFGKKLAEIEKKLVQKNNDETLRNRTGPAKMPYTLLYP-----SSEEGLTFRGI 741          
The following BLAST results are available for this feature:
BLAST of DY258402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
LOX2_ORYSJ2.936e-6345.87Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]
LOX1_HORVU3.835e-6347.93Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]
LOX2_SOYBN6.541e-6344.81Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOX1_LENCU2.486e-6245.87Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]
LOXX_SOYBN5.537e-6245.64Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOXB_SOLLC5.537e-6246.06Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOX4_SOYBN1.234e-6144.63Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
LOXA_PHAVU7.996e-6144.81Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]
LOX1_SOYBN3.359e-5942.98Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOXB_PHAVU4.107e-5742.37Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CC08FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258402 ID=DY258402; Name=DY258402; organism=Citrus clementina; type=EST; length=772bp
ATTCTCTTCCAAGACTATCCCTATGGTTTAGATGGACTTGATGTATGGCT
TGCCATTATGACATGGGTCAAAGATTATTGCTCCATCTTCTACAAAGATG
ATGATTCTGTCAAGTCTGACGAGGAAATCCAAGCATGGTGGAAAGAAATC
CGAGAAGTAGGTCATGGTGATAAGCGCAATGCGAGCTGGTGGTTTGAAAT
GAACTCTCGTGACAACCTAATACAAGCTCTAACTATTCTCATATGGACTT
CGTCAGCCCTTCATGCTTCAGTGAACTTTGGGCAGTATGCATATGCTGGA
TACCCTCCAAATCGTCCCACACTATGTCGAAAATTCATTCCGGATGAAGG
AACACACGAATTTGCAGAGTTATTAATTGATTCAGACAAGTACTATCTTA
AAATGCTACCTGAAAGATTTGCGATAACCCTTAGTACTGCATTGGTAGAA
GTCTTATCGCGGCATACATCAGATGAAGTTTACTTGGGGCAGAGGCAATC
ATCAGAATGGACAGATGATCAGGAGGTTTTGCTAAAATTTGAAGAGTTCG
GTGAGAAGTTGAAAGAAATAGAGCAAAAAATCGTGGAGAGGAACAGAAAT
GCCAGGCTTAAGAACAGATGGGGACCTGCCAAGATAGCGTACAAACTTAT
GCATCCCGATACATCAAACGTCAAAAACGACGGAGGCCTCACAGGAAAAG
GTATCCCAAACAGTATATCCATTTAACGCAAGTTCAAGTACATTCAATAA
AACTATTAAGCGCTTCTGGGTG
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