DY258402

Overview
NameDY258402
Unique NameDY258402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1114 contig Ccv1_Contig1114:1..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY258402 vs. ExPASy Swiss-Prot
Match: LX12E_MOUSE (Arachidonate 12-lipoxygenase, epidermal-type OS=Mus musculus GN=Alox12e PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 34/104 (32.69%), Postives = 54/104 (51.92%), Query Frame = 1 
Query:   22 YGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRK 333
            Y  D L +W  I  +V+    +FY+ D  VK D E+Q W +E+ EVG    ++  +   + SR  L + + + I+T +  HAS + GQ  +  + PN P   RK
Sbjct:  460 YAQDALRLWEIISRYVERMVELFYRSDTDVKEDPELQVWCREVTEVGLLGAQDRGFPLSLESRAELCRFVAMCIFTCTGQHASTHLGQLDWYAWIPNGPCTMRK 563
The following BLAST results are available for this feature:
BLAST of DY258402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
LX12E_MOUSE5.811e-1132.69Arachidonate 12-lipoxygenase, epidermal-type OS=Mu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CC08FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258402 ID=DY258402; Name=DY258402; organism=Citrus clementina; type=EST; length=772bp
ATTCTCTTCCAAGACTATCCCTATGGTTTAGATGGACTTGATGTATGGCT
TGCCATTATGACATGGGTCAAAGATTATTGCTCCATCTTCTACAAAGATG
ATGATTCTGTCAAGTCTGACGAGGAAATCCAAGCATGGTGGAAAGAAATC
CGAGAAGTAGGTCATGGTGATAAGCGCAATGCGAGCTGGTGGTTTGAAAT
GAACTCTCGTGACAACCTAATACAAGCTCTAACTATTCTCATATGGACTT
CGTCAGCCCTTCATGCTTCAGTGAACTTTGGGCAGTATGCATATGCTGGA
TACCCTCCAAATCGTCCCACACTATGTCGAAAATTCATTCCGGATGAAGG
AACACACGAATTTGCAGAGTTATTAATTGATTCAGACAAGTACTATCTTA
AAATGCTACCTGAAAGATTTGCGATAACCCTTAGTACTGCATTGGTAGAA
GTCTTATCGCGGCATACATCAGATGAAGTTTACTTGGGGCAGAGGCAATC
ATCAGAATGGACAGATGATCAGGAGGTTTTGCTAAAATTTGAAGAGTTCG
GTGAGAAGTTGAAAGAAATAGAGCAAAAAATCGTGGAGAGGAACAGAAAT
GCCAGGCTTAAGAACAGATGGGGACCTGCCAAGATAGCGTACAAACTTAT
GCATCCCGATACATCAAACGTCAAAAACGACGGAGGCCTCACAGGAAAAG
GTATCCCAAACAGTATATCCATTTAACGCAAGTTCAAGTACATTCAATAA
AACTATTAAGCGCTTCTGGGTG
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