DY258404

Overview
NameDY258404
Unique NameDY258404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_ALKOO (ATP synthase subunit beta OS=Alkaliphilus oremlandii (strain OhILAs) GN=atpD PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.615e-56
Identity = 107/172 (62.21%), Postives = 135/172 (78.49%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            +G++G++ Q+IG V+D+RF  E LP +L A+E+     ++V+EV+QH+G+  VR +AM  T+GLVRG    +TG PITVPVGR TLGRI NVIGEP+DEKG +  E   PIHR AP+F +QAT  +IL TGIKVVDL+APY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:    3 EGNVGKLVQIIGPVIDIRFSRENLPNLLNAIEIEGPDGKIVVEVSQHIGDDTVRCVAMKSTDGLVRGMEAKDTGGPITVPVGRATLGRIFNVIGEPVDEKGAVAAEAKAPIHRPAPSFEDQATSTEILETGIKVVDLIAPYLKGGKIGLFGGAGVGKTVLIMELINNIAKEH 174          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_RICTY (ATP synthase subunit beta OS=Rickettsia typhi GN=atpD PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.756e-56
Identity = 112/171 (65.50%), Postives = 136/171 (79.53%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            +IG++ QVI AVVDV+F     LP IL ALE  +   R+VLEVAQH+G+  VR I+M  TEGL+RG  V++TG+PI +PVG  TLGRIMNV+GEPID KG++K+     I++ AP F+ Q+TE+ ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:    4 NIGKITQVISAVVDVKFTNNSKLPEILNALECYNAKQRIVLEVAQHIGDDTVRCISMGSTEGLIRGLEVIDTGNPIHIPVGIATLGRIMNVVGEPIDGKGEIKSSTISSIYKPAPDFINQSTERDILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAH 174          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_CAUCR (ATP synthase subunit beta OS=Caulobacter crescentus GN=atpD PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.756e-56
Identity = 109/173 (63.01%), Postives = 136/173 (78.61%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            +G+ G++ Q+IGAVVD+ FD  LP IL A+E V+ +   RLV EVAQH+G+  VR IAMD TEGLVRGQ V +TG PI VPVG  TLGRIMNVIGEPIDE+G ++++    IHR+AP+F EQ    ++LVTGIKV+DL+ PY +GGKIGLFGGAGVGKTV + ELINN+AKA+
Sbjct:   61 EGATGRLVQIIGAVVDIEFDGALPAILNAVETVNTATGQRLVFEVAQHLGQSTVRAIAMDATEGLVRGQPVRDTGEPIRVPVGPGTLGRIMNVIGEPIDEQGPIRSDISRTIHRDAPSFAEQTNTAEVLVTGIKVIDLMCPYTKGGKIGLFGGAGVGKTVTMQELINNIAKAY 233          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_FUSNN (ATP synthase subunit beta OS=Fusobacterium nucleatum subsp. nucleatum GN=atpD PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.700e-56
Identity = 106/167 (63.47%), Postives = 128/167 (76.65%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G + Q+I AVVD+ F + LP I  AL+V      LVLEV QH+G  VVRT+AMD T+GL RG  V++TG PIT+PVG+  LGRI+NV+GEP+D +G L  E +LPIHREAP F +  TE +I  TGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:    4 GTITQIISAVVDIAFKDELPAIYNALKVKLEDKELVLEVEQHLGNNVVRTVAMDSTDGLKRGMEVIDTGKPITIPVGKAVLGRILNVLGEPVDNQGPLNAETFLPIHREAPEFDDLETETEIFETGIKVIDLLAPYIKGGKIGLFGGAGVGKTVLIMELINNIAKGH 170          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_GEOLS (ATP synthase subunit beta OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=atpD PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.139e-56
Identity = 115/175 (65.71%), Postives = 134/175 (76.57%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSV-----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            +IG++ QVIGAV+DV F+ G LP I  AL V + ++      LVLEVAQH+GE  VRTIAMD T+GL RGQ V++TG  I  PVGR TLGRIMNVIGEP+DE G +  E    IHREAPAF +Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:    4 NIGKISQVIGAVIDVEFEPGKLPEIYHALRVTNPAIDDRENNLVLEVAQHLGENSVRTIAMDSTDGLKRGQAVIDTGKQICAPVGRKTLGRIMNVIGEPVDEMGPIGNEKEYGIHREAPAFEDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIAKQH 178          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_ACICJ (ATP synthase subunit beta OS=Acidiphilium cryptum (strain JF-5) GN=atpD PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.047e-55
Identity = 113/171 (66.08%), Postives = 130/171 (76.02%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            K   G++ Q++G VVDV+F+  LP IL ALE      RLVLEVAQ +GE  VR IAMD T+GL RG  V +TG  I VPVG  TLGRI+NVIGEPIDE+G + T    PIHR+AP+F EQAT  +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AK H
Sbjct:    3 KNVTGRITQIMGPVVDVQFEGELPYILNALETRVGDRRLVLEVAQEIGERTVRCIAMDSTDGLARGDEVRDTGEAIAVPVGPETLGRILNVIGEPIDERGPIPTTRTAPIHRQAPSFDEQATSAEILVTGIKVVDLLAPYLKGGKIGLFGGAGVGKTVLIQELINNIAKGH 173          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_DESDA (ATP synthase subunit beta OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=atpD PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.333e-55
Identity = 107/174 (61.49%), Postives = 136/174 (78.16%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVVD----HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            +IG++ QVIGAVVDV F +G LP I TALE+ +     +  L+ EVAQH+G+ VVRTIAMD TEGLVRG   ++TG PI VPVG+ ++GRI+NVIG P+DE G +  E Y PIHR APAF +Q T+ ++L TGIKVVDLL P+ +GGK+GLFGGAGVGKTV++ME+INN+AK H
Sbjct:    4 NIGKIVQVIGAVVDVEFSDGNLPNIFTALEIKNPNNTDAPELICEVAQHLGDNVVRTIAMDATEGLVRGMDAVDTGQPIMVPVGKPSVGRILNVIGRPVDEMGPINAEKYYPIHRPAPAFTDQNTKVELLETGIKVVDLLVPFPKGGKMGLFGGAGVGKTVILMEMINNIAKQH 177          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_CAUSK (ATP synthase subunit beta OS=Caulobacter sp. (strain K31) GN=atpD PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.047e-55
Identity = 111/175 (63.43%), Postives = 133/175 (76.00%), Query Frame = 3
Query:  270 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            T +   G++ QVIGAVVDV F   LP IL ALE V+ +   RLV EVAQH+G+  VR IAMD TEGLVRGQ V +TG  I VPVG  TLGRIMNVIGEPIDE+G +K++ +  IHR+AP F EQ    ++LVTGIKV+DL+ PY +GGKIGLFGGAGVGKTV + ELINN+AKA+
Sbjct:   63 TIRAGTGKLVQVIGAVVDVEFTGELPAILNALETVNIATGQRLVFEVAQHLGQNTVRAIAMDATEGLVRGQEVRDTGQSIRVPVGPGTLGRIMNVIGEPIDEQGPIKSDIFRTIHRDAPTFAEQTNTAEVLVTGIKVIDLMCPYTKGGKIGLFGGAGVGKTVTMQELINNIAKAY 237          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_PROMO (ATP synthase subunit beta, sodium ion specific OS=Propionigenium modestum GN=atpD PE=1 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 3.979e-55
Identity = 106/168 (63.10%), Postives = 130/168 (77.38%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVV-DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G + Q+IG VVDV F+  LP I  AL++   +   LV EV QH+G  VVR +AMD T+GL RG  V++TG  ITVPVG+  LGRI+NV+GEP+DE G++K E Y PIHREAPAF +Q TE+++  TGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINN+A+ H
Sbjct:    5 GVITQIIGPVVDVTFENELPRIYNALKIDRGNGEYLVAEVQQHLGNSVVRAVAMDATDGLQRGMEVVDTGPAITVPVGKAVLGRILNVLGEPVDEAGEVKAEEYAPIHREAPAFEDQGTEKEVFETGIKVVDLLAPYVKGGKIGLFGGAGVGKTVLIMELINNIAQGH 172          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_MARMM (ATP synthase subunit beta OS=Maricaulis maris (strain MCS10) GN=atpD PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.979e-55
Identity = 112/167 (67.07%), Postives = 126/167 (75.45%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 782
            S G++ Q+ GAVVDV FD  LP IL ALE  +    L LEVAQH+GE  VRTIAMD TEGL RG  V +TG PI VPVG  TLGRIM+V G+PIDE GD+      PIHR AP+F EQATE ++L TGIKVVDLL PY +GGKIGLFGGAGVGKTVLI ELINN+AK
Sbjct:    4 SQGRIVQITGAVVDVEFDGTLPDILNALETTNDDKTLTLEVAQHLGENTVRTIAMDATEGLQRGTVVTDTGGPIMVPVGPGTLGRIMSVTGQPIDEAGDVPHTMKAPIHRPAPSFDEQATEAEVLPTGIKVVDLLCPYAKGGKIGLFGGAGVGKTVLIQELINNIAK 170          
The following BLAST results are available for this feature:
BLAST of DY258404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_ALKOO1.615e-5662.21ATP synthase subunit beta OS=Alkaliphilus oremland... [more]
ATPB_RICTY2.756e-5665.50ATP synthase subunit beta OS=Rickettsia typhi GN=a... [more]
ATPB_CAUCR2.756e-5663.01ATP synthase subunit beta OS=Caulobacter crescentu... [more]
ATPB_FUSNN4.700e-5663.47ATP synthase subunit beta OS=Fusobacterium nucleat... [more]
ATPB_GEOLS6.139e-5665.71ATP synthase subunit beta OS=Geobacter lovleyi (st... [more]
ATPB_ACICJ1.047e-5566.08ATP synthase subunit beta OS=Acidiphilium cryptum ... [more]
ATPB_DESDA2.333e-5561.49ATP synthase subunit beta OS=Desulfovibrio desulfu... [more]
ATPB_CAUSK3.047e-5563.43ATP synthase subunit beta OS=Caulobacter sp. (stra... [more]
ATPB_PROMO3.979e-5563.10ATP synthase subunit beta, sodium ion specific OS=... [more]
ATPB_MARMM3.979e-5567.07ATP synthase subunit beta OS=Maricaulis maris (str... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CD02FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258404 ID=DY258404; Name=DY258404; organism=Citrus clementina; type=EST; length=790bp
TTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAGACTCCTATCA
TCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTTC
TAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTATG
GGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCACT
GCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTGG
TAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGTC
AGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCCG
ATTTTGACCGCGCTTGAAGTGGTAGATCACTCGGTTCGGTTAGTGCTTGA
GGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGATG
GAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCA
ATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCAT
TGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGC
CCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACAG
ATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAG
AGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGC
TTATTATGGAACTTATTAACAATGTTGCAAAGGCTCATGG
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