DY258404

Overview
NameDY258404
Unique NameDY258404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3127 contig Ccv1_Contig3127:11..800. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_SINMW (ATP synthase subunit beta OS=Sinorhizobium medicae (strain WSM419) GN=atpD PE=3 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.458e-65
Identity = 133/189 (70.37%), Postives = 151/189 (79.89%), Query Frame = 3
Query:  234 KKGGGGKITDEFT---GKGSIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            KK    K     T     G++G+V QVIGAVVDV F+EG LP IL ALE  ++  RLVLEVAQH+GE  VRTIAMD TEGLVRGQ+V +TG+PI VPVG+ TLGRIMNVIGEP+DE G LKT     IH++APA+V+Q+TE QILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   20 KKAASAKTASATTVVAATGAVGRVTQVIGAVVDVAFEEGQLPKILNALETDNNGNRLVLEVAQHLGENSVRTIAMDSTEGLVRGQKVTDTGAPIAVPVGKETLGRIMNVIGEPVDEAGPLKTSARRAIHQDAPAYVDQSTEAQILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 208          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_DROME (ATP synthase subunit beta, mitochondrial OS=Drosophila melanogaster GN=ATPsyn-beta PE=1 SV=3)

HSP 1 Score: 249.595 bits (636), Expect = 1.458e-65
Identity = 126/167 (75.45%), Postives = 143/167 (85.63%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G++  VIGAVVDV+FD+ LPPIL ALEV + S RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL+TG PI +PVG  TLGRI+NVIGEPIDE+G + T+    IH EAP FV+ + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   38 GKIVAVIGAVVDVQFDDNLPPILNALEVDNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPIRIPVGAETLGRIINVIGEPIDERGPIDTDKTAAIHAEAPEFVQMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 204          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_RHIE6 (ATP synthase subunit beta OS=Rhizobium etli (strain CIAT 652) GN=atpD PE=3 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.486e-65
Identity = 128/169 (75.74%), Postives = 145/169 (85.80%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            S+G+V QVIGAVVDV F+  LP IL ALE  ++  RLVLEVAQH+GE  VRTIAMD +EGLVRGQ+V++TG+PI+VPVG  TLGRIMNVIGEP+DE G L T H   IH++APA+VEQ+TE QILVTGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:    8 SVGKVTQVIGAVVDVAFEGELPAILNALETDNNGNRLVLEVAQHLGENEVRTIAMDSSEGLVRGQQVIDTGAPISVPVGDETLGRIMNVIGEPVDEAGPLNTAHKRAIHQDAPAYVEQSTEAQILVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNVAKAH 176          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_RHISN (ATP synthase subunit beta OS=Rhizobium sp. (strain NGR234) GN=atpD PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.539e-65
Identity = 132/186 (70.97%), Postives = 149/186 (80.11%), Query Frame = 3
Query:  234 KKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            KK    K T      G++G+V QVIGAVVDV F+EG LP IL ALE  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG PI+VPVG+ TLGRIMNVIGEP+DE G ++T     IH++APA+VEQ+TE QILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   20 KKAATAKTT-AVVATGAVGRVTQVIGAVVDVAFEEGQLPQILNALETDNKGNRLVLEVAQHLGENAVRTIAMDSTEGLVRGQSVTDTGGPISVPVGKETLGRIMNVIGEPVDEAGPVETSSRRAIHQDAPAYVEQSTEAQILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 204          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_RHIEC (ATP synthase subunit beta OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=atpD PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.539e-65
Identity = 127/169 (75.15%), Postives = 145/169 (85.80%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            S+G+V QVIGAVVDV F+  LP IL ALE  ++  RLVLEVAQH+GE  VRTIAMD +EGLVRGQ+V++TG+PI+VPVG  TLGRIMNVIGEP+DE G L T H   IH++APA+VEQ+TE QILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:    8 SVGKVTQVIGAVVDVAFEGELPAILNALETDNNGNRLVLEVAQHLGENEVRTIAMDSSEGLVRGQQVIDTGAPISVPVGDETLGRIMNVIGEPVDEAGPLNTAHKRAIHQDAPAYVEQSTEAQILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 176          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB1_RHOS4 (ATP synthase subunit beta 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.234e-64
Identity = 126/169 (74.56%), Postives = 140/169 (82.84%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            S G+V QVIGAVVDV+FD GLPPIL ALE  ++  RLVLEVAQH+GE  VRTIAMD TEGLVRG RV +TGSPI+VPVG  TLGRI+NVIGEPIDEKGDL       IH+ AP F EQ+T  +ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:    5 SQGKVTQVIGAVVDVQFDGGLPPILNALETENNGKRLVLEVAQHLGESTVRTIAMDATEGLVRGARVTDTGSPISVPVGDATLGRILNVIGEPIDEKGDLGEASTRAIHQPAPTFAEQSTTSEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVH 173          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB1_RHOS1 (ATP synthase subunit beta 1 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.234e-64
Identity = 126/169 (74.56%), Postives = 140/169 (82.84%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            S G+V QVIGAVVDV+FD GLPPIL ALE  ++  RLVLEVAQH+GE  VRTIAMD TEGLVRG RV +TGSPI+VPVG  TLGRI+NVIGEPIDEKGDL       IH+ AP F EQ+T  +ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:    5 SQGKVTQVIGAVVDVQFDGGLPPILNALETENNGKRLVLEVAQHLGESTVRTIAMDATEGLVRGARVTDTGSPISVPVGDATLGRILNVIGEPIDEKGDLGEASTRAIHQPAPTFAEQSTTSEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVH 173          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_HEMPU (ATP synthase subunit beta, mitochondrial OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.105e-64
Identity = 123/167 (73.65%), Postives = 142/167 (85.03%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            GQ+  VIGAVVDV+F++ LPPIL ALEV   + RLVLEVAQH+GE  VRTIAMDGTEGL+RGQ+ ++TGSPI++PVG  TLGRI+NVIGEPIDE+G + T+    IH EAP FVE +  Q+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   56 GQIVAVIGAVVDVQFEDDLPPILNALEVQGRTSRLVLEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGSPISIPVGPETLGRIINVIGEPIDERGPIGTDRRSAIHAEAPEFVEMSVNQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 222          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_RHORU (ATP synthase subunit beta OS=Rhodospirillum rubrum GN=atpD PE=1 SV=3)

HSP 1 Score: 245.358 bits (625), Expect = 2.749e-64
Identity = 122/171 (71.35%), Postives = 141/171 (82.46%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            K ++G + QV GAVVDV+F+  LP IL+ALE  +H  RLVLEVAQH+GE VVRTIAMD TEGLVRGQ+V +TG PITVPVG   LGRIMNVIGEP+DE+G + T    PIHR+AP F EQATE +ILVTGIKV+DL+APY +GGK+GLFGGAGVGKTVLI ELINNVAK H
Sbjct:    3 KNNLGTITQVTGAVVDVKFEGELPSILSALETDNHGNRLVLEVAQHLGESVVRTIAMDSTEGLVRGQQVTSTGGPITVPVGPQVLGRIMNVIGEPVDERGPVVTAQRYPIHRQAPTFAEQATETEILVTGIKVIDLIAPYTKGGKVGLFGGAGVGKTVLIQELINNVAKGH 173          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_RHORT (ATP synthase subunit beta OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=atpD PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.749e-64
Identity = 122/171 (71.35%), Postives = 141/171 (82.46%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            K ++G + QV GAVVDV+F+  LP IL+ALE  +H  RLVLEVAQH+GE VVRTIAMD TEGLVRGQ+V +TG PITVPVG   LGRIMNVIGEP+DE+G + T    PIHR+AP F EQATE +ILVTGIKV+DL+APY +GGK+GLFGGAGVGKTVLI ELINNVAK H
Sbjct:    3 KNNLGTITQVTGAVVDVKFEGELPSILSALETDNHGNRLVLEVAQHLGESVVRTIAMDSTEGLVRGQQVTSTGGPITVPVGPQVLGRIMNVIGEPVDERGPVVTAQRYPIHRQAPTFAEQATETEILVTGIKVIDLIAPYTKGGKVGLFGGAGVGKTVLIQELINNVAKGH 173          
The following BLAST results are available for this feature:
BLAST of DY258404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_SINMW1.458e-6570.37ATP synthase subunit beta OS=Sinorhizobium medicae... [more]
ATPB_DROME1.458e-6575.45ATP synthase subunit beta, mitochondrial OS=Drosop... [more]
ATPB_RHIE62.486e-6575.74ATP synthase subunit beta OS=Rhizobium etli (strai... [more]
ATPB_RHISN5.539e-6570.97ATP synthase subunit beta OS=Rhizobium sp. (strain... [more]
ATPB_RHIEC5.539e-6575.15ATP synthase subunit beta OS=Rhizobium etli (strai... [more]
ATPB1_RHOS41.234e-6474.56ATP synthase subunit beta 1 OS=Rhodobacter sphaero... [more]
ATPB1_RHOS11.234e-6474.56ATP synthase subunit beta 1 OS=Rhodobacter sphaero... [more]
ATPB_HEMPU2.105e-6473.65ATP synthase subunit beta, mitochondrial OS=Hemice... [more]
ATPB_RHORU2.749e-6471.35ATP synthase subunit beta OS=Rhodospirillum rubrum... [more]
ATPB_RHORT2.749e-6471.35ATP synthase subunit beta OS=Rhodospirillum rubrum... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CD02FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258404 ID=DY258404; Name=DY258404; organism=Citrus clementina; type=EST; length=790bp
TTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAGACTCCTATCA
TCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTTC
TAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTATG
GGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCACT
GCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTGG
TAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGTC
AGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCCG
ATTTTGACCGCGCTTGAAGTGGTAGATCACTCGGTTCGGTTAGTGCTTGA
GGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGATG
GAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCA
ATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCAT
TGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGC
CCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACAG
ATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAG
AGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGC
TTATTATGGAACTTATTAACAATGTTGCAAAGGCTCATGG
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