DY258404

Overview
NameDY258404
Unique NameDY258404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3127 contig Ccv1_Contig3127:11..800. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_BRUA2 (ATP synthase subunit beta OS=Brucella abortus (strain 2308) GN=atpD PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.771e-63
Identity = 126/171 (73.68%), Postives = 141/171 (82.46%), Query Frame = 3
Query:  279 GSIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G+IG + QVIGAVVDV+F EG LP IL ALEV +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   50 GAIGHITQVIGAVVDVKFPEGQLPLILNALEVDNQGHRLVLEVAQHLGEDTVRTIAMDATEGLVRGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 220          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_NEUCR (ATP synthase subunit beta, mitochondrial OS=Neurospora crassa GN=atp-2 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 8.844e-63
Identity = 120/168 (71.43%), Postives = 142/168 (84.52%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G++ QVIGAVVDV+FD + LPPIL ALE  ++  +LVLEV+QH+GE VVR IAMDGTEGLVRG +  +TG+PIT+PVG  TLGRI+NV G+PIDE+G +KT+ + PIH EAP FVEQ+T  +ILVTGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAH
Sbjct:   49 GKIYQVIGAVVDVKFDTDKLPPILNALETQNNGQKLVLEVSQHLGENVVRCIAMDGTEGLVRGAKASDTGAPITIPVGPATLGRIINVTGDPIDERGPIKTDKFRPIHAEAPEFVEQSTTAEILVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAH 216          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_PELUB (ATP synthase subunit beta OS=Pelagibacter ubique GN=atpD PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.970e-62
Identity = 124/169 (73.37%), Postives = 140/169 (82.84%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            S G++ Q+IGAVVDV+FD  LP IL+ALE  +   RLVLEVAQH+GE  VRTIAMD TEGL RG  V  TG+PI VPVG  TLGRI+NVIGEPIDEKG++KT+   PIHR AP F +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:    2 SKGKITQIIGAVVDVKFDGELPEILSALECKNGDNRLVLEVAQHLGESSVRTIAMDATEGLKRGDEVTATGAPIQVPVGPETLGRIINVIGEPIDEKGEVKTKEKWPIHRAAPEFSDQSTETEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 170          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_NITWN (ATP synthase subunit beta OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=atpD PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.970e-62
Identity = 121/173 (69.94%), Postives = 141/173 (81.50%), Query Frame = 3
Query:  270 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            T    +G++ QVIGAVVDV+F+  LP IL A+E  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE+G +K +   PIH EAP++ +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKAH
Sbjct:    3 TAANQVGRITQVIGAVVDVQFEGHLPAILNAIETKNGENRLVLEVAQHLGESTVRTIAMDTTEGLVRGQDVTDTGAPIRVPVGAGTLGRIMNVIGEPVDEQGPVKADDLRPIHAEAPSYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAH 175          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_PARL1 (ATP synthase subunit beta OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=atpD PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.361e-62
Identity = 122/169 (72.19%), Postives = 139/169 (82.25%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            ++G++ QVIGAVVDV F + LP IL ALE  +   RLVLEVAQH+GE  VRTIAMD TEGL RGQ V +TG+ ITVPVG  TLGRI+NVIGEP+DE G +K E    IH+EAP+FVEQ+TE Q+LVTGIKVVDLLAPY RGGKIGLFGGAGVGKTVLI ELINN+AKAH
Sbjct:    4 AVGKIAQVIGAVVDVTFTDNLPAILNALETTNGGNRLVLEVAQHLGENTVRTIAMDTTEGLTRGQEVRDTGNAITVPVGEGTLGRIINVIGEPVDEAGPVKHEARREIHQEAPSFVEQSTEAQMLVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIQELINNIAKAH 172          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPA (ATP synthase subunit beta OS=Rhodopseudomonas palustris GN=atpD PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.732e-62
Identity = 121/173 (69.94%), Postives = 142/173 (82.08%), Query Frame = 3
Query:  270 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            T     G++ QVIGAVVDV+F+  LP IL A+E  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI+VPVG  TLGRIMNVIGEP+DE+G +K+E    IH+EAPA+ +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVA+AH
Sbjct:    3 TPANQTGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGAPISVPVGAGTLGRIMNVIGEPVDEQGPIKSEGLRAIHQEAPAYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVARAH 175          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_OLICO (ATP synthase subunit beta OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=atpD PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 7.487e-62
Identity = 120/168 (71.43%), Postives = 138/168 (82.14%), Query Frame = 3
Query:  285 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            +G++ QVIGAVVDV+FD  LP IL A+E  +   RLVLEVAQH+GE  VR IAMD TEGLVRGQ V +TG+PI VPVG  TLGRIMNV+GEP+DE G +K +    IH+EAPA+ EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKAH
Sbjct:    8 VGRITQVIGAVVDVQFDGYLPAILNAIETTNQGHRLVLEVAQHLGESTVRAIAMDTTEGLVRGQEVTDTGAPIKVPVGEGTLGRIMNVVGEPVDEGGPVKADGTRAIHQEAPAYTEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAH 175          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_RHOS5 (ATP synthase subunit beta OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=atpD PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 9.778e-62
Identity = 121/169 (71.60%), Postives = 137/169 (81.07%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            S G+V QVIGAVVDV+FD GLP IL ALE V++  RLVLEVAQH+GE  VRTIAMD TEGLVRG  V + G PI+VPVG  TLGRI+NVIGEPIDEKG +  +    IH+ AP F EQ+T  +ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:    5 SQGKVTQVIGAVVDVQFDGGLPAILNALETVNNDKRLVLEVAQHLGENTVRTIAMDATEGLVRGAPVTDLGGPISVPVGDATLGRILNVIGEPIDEKGPVSGDSTRAIHQPAPTFAEQSTTSEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVH 173          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_NOVAD (ATP synthase subunit beta OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=atpD PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.277e-61
Identity = 121/169 (71.60%), Postives = 137/169 (81.07%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            S G++ QVIGAVVDV FD  LP IL+ALE  ++  RLVLEVAQH+GE  VRTIAMD T+GL RGQ V NTG+ I+VPVG  TLGRIMNVIGEPIDE+G +  E   PIH +AP F+EQ+TE  ILVTGIKV+DLLAPY RGGKIGLFGGAGVGKTVLI ELINN+AK H
Sbjct:    7 STGKISQVIGAVVDVTFDGELPAILSALETDNNGNRLVLEVAQHLGENTVRTIAMDSTDGLTRGQPVTNTGAQISVPVGPKTLGRIMNVIGEPIDERGPVGAEQTAPIHAKAPEFIEQSTEAAILVTGIKVIDLLAPYARGGKIGLFGGAGVGKTVLIQELINNIAKGH 175          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_BARBK (ATP synthase subunit beta OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=atpD PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.277e-61
Identity = 117/171 (68.42%), Postives = 141/171 (82.46%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            KG++G++ QVIGA+VDV+F+  LP IL ALE      RL+LEVAQH+GE  VRTIAMD T+GLVRGQ+V +TG+ I VPVG  TLGRIMNVIGEP+DE G + T     IH++AP ++EQ+TE +ILVTGIKVVDLLAPY +GGK+GLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   60 KGAVGEIKQVIGAIVDVQFEGALPNILNALETDRLGSRLILEVAQHLGENTVRTIAMDTTDGLVRGQKVFDTGTQICVPVGEATLGRIMNVIGEPVDEVGPIVTTKTRSIHQKAPEYIEQSTESEILVTGIKVVDLLAPYSKGGKVGLFGGAGVGKTVLIMELINNIAKAH 230          
The following BLAST results are available for this feature:
BLAST of DY258404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_BRUA26.771e-6373.68ATP synthase subunit beta OS=Brucella abortus (str... [more]
ATPB_NEUCR8.844e-6371.43ATP synthase subunit beta, mitochondrial OS=Neuros... [more]
ATPB_PELUB1.970e-6273.37ATP synthase subunit beta OS=Pelagibacter ubique G... [more]
ATPB_NITWN1.970e-6269.94ATP synthase subunit beta OS=Nitrobacter winograds... [more]
ATPB_PARL13.361e-6272.19ATP synthase subunit beta OS=Parvibaculum lavament... [more]
ATPB_RHOPA5.732e-6269.94ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_OLICO7.487e-6271.43ATP synthase subunit beta OS=Oligotropha carboxido... [more]
ATPB_RHOS59.778e-6271.60ATP synthase subunit beta OS=Rhodobacter sphaeroid... [more]
ATPB_NOVAD1.277e-6171.60ATP synthase subunit beta OS=Novosphingobium aroma... [more]
ATPB_BARBK1.277e-6168.42ATP synthase subunit beta OS=Bartonella bacillifor... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CD02FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258404 ID=DY258404; Name=DY258404; organism=Citrus clementina; type=EST; length=790bp
TTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAGACTCCTATCA
TCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTTC
TAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTATG
GGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCACT
GCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTGG
TAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGTC
AGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCCG
ATTTTGACCGCGCTTGAAGTGGTAGATCACTCGGTTCGGTTAGTGCTTGA
GGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGATG
GAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCA
ATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCAT
TGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGC
CCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACAG
ATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAG
AGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGC
TTATTATGGAACTTATTAACAATGTTGCAAAGGCTCATGG
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