DY258404

Overview
NameDY258404
Unique NameDY258404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_BACFN (ATP synthase subunit beta OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.371e-47
Identity = 100/174 (57.47%), Postives = 123/174 (70.69%), Query Frame = 3
Query:  285 IGQVCQVIGAVVDVRF-----DEGLPPILTALEVVDHS-VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            IG + QVIG VVDV F     D  LP I  ALE+  H+  +L++EV QH+GE  VRT+AMD T+GL RG +V  TG PIT+PVG    GR+MNV+G+ ID   +L  +    IHR+ P F +  T Q++L TGIKV+DLL PY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:    5 IGHISQVIGPVVDVYFEGTESDLILPSIHDALEIKRHNGKKLIVEVQQHIGENTVRTVAMDSTDGLQRGMKVFPTGGPITMPVGEQIKGRLMNVVGDSIDGMKELNRDGAYSIHRDPPKFEDLTTVQEVLFTGIKVIDLLEPYSKGGKIGLFGGAGVGKTVLIMELINNIAKKH 178          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_ACIAC (ATP synthase subunit beta OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.371e-47
Identity = 98/171 (57.31%), Postives = 128/171 (74.85%), Query Frame = 3
Query:  279 GSIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G  G++ Q IGAVVDV F  + +P +  AL++      L LEV Q +G+GVVRTIA+  ++GL RG  V NTG+PITVPVG+ TLGRIM+V+G PIDE+G +  E    IHR+APA+ E +  Q++L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELINN+AKAH
Sbjct:   11 GVQGKIVQCIGAVVDVEFPRDQMPKVYDALKL--EGSPLTLEVQQQLGDGVVRTIALGSSDGLRRGLMVSNTGNPITVPVGKATLGRIMDVLGSPIDERGPVSQELTASIHRKAPAYDELSPSQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAH 179          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_YERPY (ATP synthase subunit beta OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 98/168 (58.33%), Postives = 123/168 (73.21%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G++ QVIGAVVDV F  + +P +  ALEV   + +LVLEV Q +G GVVR IAM  ++GL RG +V N   PI VPVG+ TLGRIMNV+GEPID KG +  E    IHREAP++ E A+ Q +L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:    4 GKIIQVIGAVVDVEFPQDAVPKVYNALEVEGTTEKLVLEVQQQLGGGVVRCIAMGSSDGLSRGLKVTNLEHPIEVPVGKATLGRIMNVLGEPIDMKGPIGEEERWAIHREAPSYEELASSQDLLETGIKVMDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 171          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_YERPS (ATP synthase subunit beta OS=Yersinia pseudotuberculosis GN=atpD PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 98/168 (58.33%), Postives = 123/168 (73.21%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G++ QVIGAVVDV F  + +P +  ALEV   + +LVLEV Q +G GVVR IAM  ++GL RG +V N   PI VPVG+ TLGRIMNV+GEPID KG +  E    IHREAP++ E A+ Q +L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:    4 GKIIQVIGAVVDVEFPQDAVPKVYNALEVEGTTEKLVLEVQQQLGGGVVRCIAMGSSDGLSRGLKVTNLEHPIEVPVGKATLGRIMNVLGEPIDMKGPIGEEERWAIHREAPSYEELASSQDLLETGIKVMDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 171          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_YERPP (ATP synthase subunit beta OS=Yersinia pestis (strain Pestoides F) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 98/168 (58.33%), Postives = 123/168 (73.21%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G++ QVIGAVVDV F  + +P +  ALEV   + +LVLEV Q +G GVVR IAM  ++GL RG +V N   PI VPVG+ TLGRIMNV+GEPID KG +  E    IHREAP++ E A+ Q +L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:    4 GKIIQVIGAVVDVEFPQDAVPKVYNALEVEGTTEKLVLEVQQQLGGGVVRCIAMGSSDGLSRGLKVTNLEHPIEVPVGKATLGRIMNVLGEPIDMKGPIGEEERWAIHREAPSYEELASSQDLLETGIKVMDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 171          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_YERPN (ATP synthase subunit beta OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 98/168 (58.33%), Postives = 123/168 (73.21%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G++ QVIGAVVDV F  + +P +  ALEV   + +LVLEV Q +G GVVR IAM  ++GL RG +V N   PI VPVG+ TLGRIMNV+GEPID KG +  E    IHREAP++ E A+ Q +L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:    4 GKIIQVIGAVVDVEFPQDAVPKVYNALEVEGTTEKLVLEVQQQLGGGVVRCIAMGSSDGLSRGLKVTNLEHPIEVPVGKATLGRIMNVLGEPIDMKGPIGEEERWAIHREAPSYEELASSQDLLETGIKVMDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 171          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_YERPG (ATP synthase subunit beta OS=Yersinia pestis bv. Antiqua (strain Angola) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 98/168 (58.33%), Postives = 123/168 (73.21%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G++ QVIGAVVDV F  + +P +  ALEV   + +LVLEV Q +G GVVR IAM  ++GL RG +V N   PI VPVG+ TLGRIMNV+GEPID KG +  E    IHREAP++ E A+ Q +L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:    4 GKIIQVIGAVVDVEFPQDAVPKVYNALEVEGTTEKLVLEVQQQLGGGVVRCIAMGSSDGLSRGLKVTNLEHPIEVPVGKATLGRIMNVLGEPIDMKGPIGEEERWAIHREAPSYEELASSQDLLETGIKVMDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 171          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_YERPE (ATP synthase subunit beta OS=Yersinia pestis GN=atpD PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 98/168 (58.33%), Postives = 123/168 (73.21%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G++ QVIGAVVDV F  + +P +  ALEV   + +LVLEV Q +G GVVR IAM  ++GL RG +V N   PI VPVG+ TLGRIMNV+GEPID KG +  E    IHREAP++ E A+ Q +L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:    4 GKIIQVIGAVVDVEFPQDAVPKVYNALEVEGTTEKLVLEVQQQLGGGVVRCIAMGSSDGLSRGLKVTNLEHPIEVPVGKATLGRIMNVLGEPIDMKGPIGEEERWAIHREAPSYEELASSQDLLETGIKVMDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 171          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_YERPB (ATP synthase subunit beta OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 98/168 (58.33%), Postives = 123/168 (73.21%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G++ QVIGAVVDV F  + +P +  ALEV   + +LVLEV Q +G GVVR IAM  ++GL RG +V N   PI VPVG+ TLGRIMNV+GEPID KG +  E    IHREAP++ E A+ Q +L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:    4 GKIIQVIGAVVDVEFPQDAVPKVYNALEVEGTTEKLVLEVQQQLGGGVVRCIAMGSSDGLSRGLKVTNLEHPIEVPVGKATLGRIMNVLGEPIDMKGPIGEEERWAIHREAPSYEELASSQDLLETGIKVMDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 171          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_YERPA (ATP synthase subunit beta OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 98/168 (58.33%), Postives = 123/168 (73.21%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G++ QVIGAVVDV F  + +P +  ALEV   + +LVLEV Q +G GVVR IAM  ++GL RG +V N   PI VPVG+ TLGRIMNV+GEPID KG +  E    IHREAP++ E A+ Q +L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:    4 GKIIQVIGAVVDVEFPQDAVPKVYNALEVEGTTEKLVLEVQQQLGGGVVRCIAMGSSDGLSRGLKVTNLEHPIEVPVGKATLGRIMNVLGEPIDMKGPIGEEERWAIHREAPSYEELASSQDLLETGIKVMDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 171          
The following BLAST results are available for this feature:
BLAST of DY258404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_BACFN1.371e-4757.47ATP synthase subunit beta OS=Bacteroides fragilis ... [more]
ATPB_ACIAC1.371e-4757.31ATP synthase subunit beta OS=Acidovorax avenae sub... [more]
ATPB_YERPY1.790e-4758.33ATP synthase subunit beta OS=Yersinia pseudotuberc... [more]
ATPB_YERPS1.790e-4758.33ATP synthase subunit beta OS=Yersinia pseudotuberc... [more]
ATPB_YERPP1.790e-4758.33ATP synthase subunit beta OS=Yersinia pestis (stra... [more]
ATPB_YERPN1.790e-4758.33ATP synthase subunit beta OS=Yersinia pestis bv. A... [more]
ATPB_YERPG1.790e-4758.33ATP synthase subunit beta OS=Yersinia pestis bv. A... [more]
ATPB_YERPE1.790e-4758.33ATP synthase subunit beta OS=Yersinia pestis GN=at... [more]
ATPB_YERPB1.790e-4758.33ATP synthase subunit beta OS=Yersinia pseudotuberc... [more]
ATPB_YERPA1.790e-4758.33ATP synthase subunit beta OS=Yersinia pestis bv. A... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CD02FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258404 ID=DY258404; Name=DY258404; organism=Citrus clementina; type=EST; length=790bp
TTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAGACTCCTATCA
TCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTTC
TAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTATG
GGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCACT
GCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTGG
TAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGTC
AGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCCG
ATTTTGACCGCGCTTGAAGTGGTAGATCACTCGGTTCGGTTAGTGCTTGA
GGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGATG
GAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCA
ATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCAT
TGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGC
CCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACAG
ATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAG
AGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGC
TTATTATGGAACTTATTAACAATGTTGCAAAGGCTCATGG
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