DY258404

Overview
NameDY258404
Unique NameDY258404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3127 contig Ccv1_Contig3127:11..800. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_RHOP5 (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisA53) GN=atpD PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.668e-61
Identity = 121/167 (72.46%), Postives = 138/167 (82.63%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G++ QVIGAVVDV+F+  LP IL A+E  + + RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TGSPI VPVG  TLGRIMNVIGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKAH
Sbjct:    9 GRITQVIGAVVDVQFEGHLPAILNAIETKNGNNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGSPIMVPVGLGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPLYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAH 175          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_MESSB (ATP synthase subunit beta OS=Mesorhizobium sp. (strain BNC1) GN=atpD PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.668e-61
Identity = 122/173 (70.52%), Postives = 137/173 (79.19%), Query Frame = 3
Query:  270 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            T  G IG V QVIGAVVDV+F E LP IL ALE  +   RLVLEVAQH+GE  VR IAMD T+GLVRGQ V +TG+PI+VPVG   LGRI+NVIGEP+DE G +    +  IH+ AP +VEQ+TE QILVTGIKV+DLLAPY RGGKIGLFGGAGVGKTVLI ELINNVAKAH
Sbjct:   46 TASGKIGSVRQVIGAVVDVQFQENLPAILNALETDNQGNRLVLEVAQHLGENTVRCIAMDSTDGLVRGQEVRDTGAPISVPVGPEMLGRIINVIGEPVDEAGPITATEFRGIHQPAPEYVEQSTEAQILVTGIKVLDLLAPYARGGKIGLFGGAGVGKTVLIQELINNVAKAH 218          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB1_BRASB (ATP synthase subunit beta 1 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.668e-61
Identity = 121/173 (69.94%), Postives = 140/173 (80.92%), Query Frame = 3
Query:  270 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            T    IG++ QVIGAVVDV+F+  LP IL +LE  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRI+NVIGEPIDE G +K +    IH+EAP++ +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKAH
Sbjct:    3 TAANQIGRITQVIGAVVDVQFEGHLPAILNSLETKNAGNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGAPIRVPVGEGTLGRIINVIGEPIDEAGPVKADSLRAIHQEAPSYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAH 175          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_SPHWW (ATP synthase subunit beta OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=atpD PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.178e-61
Identity = 118/169 (69.82%), Postives = 136/169 (80.47%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            ++G++ QVIGAVVDV FD  LP IL ALE  ++  RLVLEVAQH+GEG VRTIAMD T+GL RGQ V +TGS I VPVG  TLGRI+NVIGEPIDE+G +      PIH EAP FV+Q+T+  ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AK H
Sbjct:    9 NVGRISQVIGAVVDVSFDGSLPAILNALETTNNGNRLVLEVAQHLGEGTVRTIAMDATDGLTRGQEVTDTGSQIRVPVGPQTLGRILNVIGEPIDERGPVNATQTSPIHAEAPLFVDQSTDASILVTGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGH 177          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPS (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisB5) GN=atpD PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.178e-61
Identity = 122/173 (70.52%), Postives = 138/173 (79.77%), Query Frame = 3
Query:  270 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            T     G++ QVIGAVVDV+F+  LP IL A+E  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TGSPI VPVG  TLGRIMNVIGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKAH
Sbjct:    3 TPANQTGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGSPIMVPVGIGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPLYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAH 175          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_BART1 (ATP synthase subunit beta OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=atpD PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.178e-61
Identity = 119/178 (66.85%), Postives = 144/178 (80.90%), Query Frame = 3
Query:  255 ITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            +  E   KG++G++ QVIGAVVDV+F+  LP IL ALE  +   RLVLEVAQH+GE  VRTIAMD T+GL+RGQ+V++TG+ I+VPVG  TLGRIMNVIGEP+D  G + +     IH+EAP +VEQ+T  +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   58 VKKEERAKGTVGEIKQVIGAVVDVQFEGALPNILNALETENLGNRLVLEVAQHLGENTVRTIAMDTTDGLMRGQKVVDTGAQISVPVGEATLGRIMNVIGEPVDNVGPIASTKTRSIHQEAPEYVEQSTVSEILVTGIKVVDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKAH 235          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_ROSDO (ATP synthase subunit beta OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpD PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.845e-61
Identity = 116/169 (68.64%), Postives = 138/169 (81.66%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            ++G++ QVIGAVVDV+F + LP IL ALE  ++  RLVLEVAQH+GE  VR IAMD TEGLVRGQ V +T  PI++PVG  TLGRIMNV+GEPIDEKG + T+    IH+EAPAF EQ+T  ++L TGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:    4 AVGKITQVIGAVVDVQFADHLPEILNALETNNNGNRLVLEVAQHLGENTVRAIAMDATEGLVRGQTVTDTDGPISIPVGNATLGRIMNVVGEPIDEKGPVATDETRSIHQEAPAFAEQSTSSEVLETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKVH 172          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_BRAJA (ATP synthase subunit beta OS=Bradyrhizobium japonicum GN=atpD PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.845e-61
Identity = 122/167 (73.05%), Postives = 138/167 (82.63%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G+V QVIGAVVDV+F+  LP IL +LE  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TGSPI VPVG  TLGRI+NVIGEPIDE G +K+E    IH+EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKAH
Sbjct:    6 GRVTQVIGAVVDVQFEGHLPAILNSLETKNGGNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGSPIRVPVGEGTLGRIINVIGEPIDEAGPVKSEGLRAIHQEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAH 172          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_XANP2 (ATP synthase subunit beta OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=atpD PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.716e-61
Identity = 120/168 (71.43%), Postives = 137/168 (81.55%), Query Frame = 3
Query:  285 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            +G++ QVIGAVVDV+FD  LP IL ALE  +   RLVLEVAQH+GE  VR IAMD TEGLVRG  V +TG+PI VPVG  TLGRIMNVIGEP+DE G ++ E    IH+ AP++ EQATE +ILVTGIKVVDLLAPY +GGK+GLFGGAGVGKTVLIMELINNVAKAH
Sbjct:    5 VGRITQVIGAVVDVQFDGHLPEILNALETTNQGNRLVLEVAQHLGESTVRCIAMDATEGLVRGLEVTDTGAPIQVPVGAGTLGRIMNVIGEPVDELGPIEAEATRGIHQPAPSYAEQATEAEILVTGIKVVDLLAPYAKGGKVGLFGGAGVGKTVLIMELINNVAKAH 172          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPB (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisB18) GN=atpD PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.716e-61
Identity = 121/173 (69.94%), Postives = 139/173 (80.35%), Query Frame = 3
Query:  270 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            T     G++ QVIGAVVDV+F+  LP IL A+E  + + RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKAH
Sbjct:    3 TPANQTGRITQVIGAVVDVQFEGHLPAILNAVETKNGNNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGNPIMVPVGVGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAH 175          
The following BLAST results are available for this feature:
BLAST of DY258404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_RHOP51.668e-6172.46ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_MESSB1.668e-6170.52ATP synthase subunit beta OS=Mesorhizobium sp. (st... [more]
ATPB1_BRASB1.668e-6169.94ATP synthase subunit beta 1 OS=Bradyrhizobium sp. ... [more]
ATPB_SPHWW2.178e-6169.82ATP synthase subunit beta OS=Sphingomonas wittichi... [more]
ATPB_RHOPS2.178e-6170.52ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_BART12.178e-6166.85ATP synthase subunit beta OS=Bartonella tribocorum... [more]
ATPB_ROSDO2.845e-6168.64ATP synthase subunit beta OS=Roseobacter denitrifi... [more]
ATPB_BRAJA2.845e-6173.05ATP synthase subunit beta OS=Bradyrhizobium japoni... [more]
ATPB_XANP23.716e-6171.43ATP synthase subunit beta OS=Xanthobacter autotrop... [more]
ATPB_RHOPB3.716e-6169.94ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CD02FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258404 ID=DY258404; Name=DY258404; organism=Citrus clementina; type=EST; length=790bp
TTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAGACTCCTATCA
TCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTTC
TAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTATG
GGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCACT
GCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTGG
TAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGTC
AGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCCG
ATTTTGACCGCGCTTGAAGTGGTAGATCACTCGGTTCGGTTAGTGCTTGA
GGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGATG
GAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCA
ATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCAT
TGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGC
CCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACAG
ATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAG
AGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGC
TTATTATGGAACTTATTAACAATGTTGCAAAGGCTCATGG
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