DY258408

Overview
NameDY258408
Unique NameDY258408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length567
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258408 vs. ExPASy Swiss-Prot
Match: FADH1_SCHPO (Probable S-(hydroxymethyl)glutathione dehydrogenase 1 OS=Schizosaccharomyces pombe GN=SPBC1539.07c PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 2
Query:    2 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNMTLWEINEAFHYMHGGDCLRCVLKMQE 181
            +AFGG K RS++P  VD+YM+   KVDEYIT+   L  IN+AF +MH G C+RCV+ M +
Sbjct:  318 SAFGGVKGRSELPNFVDEYMQGHFKVDEYITNEEPLKNINKAFDHMHEGKCIRCVVDMNK 377          
BLAST of DY258408 vs. ExPASy Swiss-Prot
Match: ADHX_HORSE (Alcohol dehydrogenase class-3 OS=Equus caballus GN=ADH5 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 2
Query:    2 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNMTLWEINEAFHYMHGGDCLRCVLKM 175
            TAFGG+KS   +P LV +YM K+IKVDE++TH+++  +INEAF  MH G  +R V+K+
Sbjct:  317 TAFGGWKSVESIPKLVSEYMSKKIKVDEFVTHSLSFDQINEAFELMHAGKSIRTVVKL 374          
BLAST of DY258408 vs. ExPASy Swiss-Prot
Match: ADHX_RAT (Alcohol dehydrogenase class-3 OS=Rattus norvegicus GN=Adh5 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.567e-12
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 2
Query:    2 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNMTLWEINEAFHYMHGGDCLRCVLKM 175
            TAFGG+KS   VP LV +YM K+IKVDE++T N++  +IN+AF  MH G+ +R VLKM
Sbjct:  317 TAFGGWKSVESVPKLVSEYMSKKIKVDEFVTGNLSFDQINKAFDLMHSGNSIRTVLKM 374          
BLAST of DY258408 vs. ExPASy Swiss-Prot
Match: FADH_PICPA (S-(hydroxymethyl)glutathione dehydrogenase OS=Pichia pastoris GN=FLD1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 2
Query:    5 AFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNMTLWEINEAFHYMHGGDCLRCVLKM 175
            AFGG K R+Q+P LV  Y+  +IKVDE+ITH   L  IN+AFH MH G+C+R V+ M
Sbjct:  322 AFGGIKGRTQMPSLVQDYLDGKIKVDEFITHRHDLDNINKAFHDMHAGNCIRAVITM 378          
BLAST of DY258408 vs. ExPASy Swiss-Prot
Match: ADH_MALDO (Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 28/60 (46.67%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    2 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNMTLWEINEAFHYMHGGDCLRCVLKMQE 181
            T FG +K+R+ +P +V+KYM KE++++++ITH +   EIN+AF YM  G+ LRC+++M+E
Sbjct:  321 TFFGNYKTRTDIPSVVEKYMNKELELEKFITHKVPFSEINKAFEYMLKGEGLRCIIRMEE 380          
BLAST of DY258408 vs. ExPASy Swiss-Prot
Match: ADHX_BOVIN (Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH5 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 2
Query:    2 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNMTLWEINEAFHYMHGGDCLRCVLKM 175
            TAFGG+KS   VP LV +YM K+IKVDE++TH++   +INEAF  MH G  +R V+K+
Sbjct:  317 TAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHSLPFDQINEAFDLMHAGKSIRTVVKL 374          
BLAST of DY258408 vs. ExPASy Swiss-Prot
Match: ADHX_DICDI (Alcohol dehydrogenase class-3 OS=Dictyostelium discoideum GN=adh5 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.120e-11
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 2
Query:    2 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNMTLWEINEAFHYMHGGDCLRCVLKM 175
            +AFGG KSRSQ+P ++DKYM K++KVDEY+T    L EIN AF  MH G  LR V+ +
Sbjct:  322 SAFGGVKSRSQLPSIIDKYMDKKLKVDEYVTFTYPLNEINTAFDVMHEGKSLRSVVNL 379          
BLAST of DY258408 vs. ExPASy Swiss-Prot
Match: ADH_FRAAN (Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.911e-11
Identity = 28/60 (46.67%), Postives = 45/60 (75.00%), Query Frame = 2
Query:    2 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNMTLWEINEAFHYMHGGDCLRCVLKMQE 181
            T FG +K R+ +P +V+KYM KE++VD++ITH +   +IN+AF YM  G+ +RC++ M+E
Sbjct:  321 TFFGNYKPRTDIPSVVEKYMNKELEVDKFITHQLPFSQINKAFDYMLKGEGIRCIITMEE 380          
BLAST of DY258408 vs. ExPASy Swiss-Prot
Match: ADHH_GADMO (Alcohol dehydrogenase class-3 chain H OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.911e-11
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 2
Query:    2 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNMTLWEINEAFHYMHGGDCLRCVL 169
            TAFGG+KS   VP LV+ YM K++KVDE++TH +    INE F  MH G  +RCVL
Sbjct:  318 TAFGGWKSVESVPKLVEDYMNKKLKVDEFVTHTLPFDSINEGFDLMHAGKSIRCVL 373          
BLAST of DY258408 vs. ExPASy Swiss-Prot
Match: ADH1_PETHY (Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 28/59 (47.46%), Postives = 45/59 (76.27%), Query Frame = 2
Query:    2 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNMTLWEINEAFHYMHGGDCLRCVLKMQ 178
            T FG +K +S +P +VDKYMKKE++++++ITH +   EIN+AF YM  G+ +RC++ M+
Sbjct:  323 TFFGNYKPKSDIPSVVDKYMKKELELEKFITHQVPFSEINKAFDYMLKGESIRCMITME 381          
The following BLAST results are available for this feature:
BLAST of DY258408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
FADH1_SCHPO5.028e-1253.33Probable S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADHX_HORSE5.028e-1253.45Alcohol dehydrogenase class-3 OS=Equus caballus GN... [more]
ADHX_RAT6.567e-1256.90Alcohol dehydrogenase class-3 OS=Rattus norvegicus... [more]
FADH_PICPA8.576e-1256.14S-(hydroxymethyl)glutathione dehydrogenase OS=Pich... [more]
ADH_MALDO8.576e-1246.67Alcohol dehydrogenase OS=Malus domestica GN=ADH PE... [more]
ADHX_BOVIN8.576e-1255.17Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH... [more]
ADHX_DICDI1.120e-1156.90Alcohol dehydrogenase class-3 OS=Dictyostelium dis... [more]
ADH_FRAAN1.911e-1146.67Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH ... [more]
ADHH_GADMO1.911e-1155.36Alcohol dehydrogenase class-3 chain H OS=Gadus mor... [more]
ADH1_PETHY2.495e-1147.46Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1CE02FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258408 ID=DY258408; Name=DY258408; organism=Citrus clementina; type=EST; length=567bp
AACAGCTTTTGGTGGTTTCAAGAGCCGTTCACAAGTGCCTTGGCTTGTAG
ACAAGTACATGAAGAAGGAAATTAAGGTTGATGAGTACATAACTCACAAT
ATGACTCTTTGGGAGATCAACGAGGCATTCCATTATATGCATGGAGGGGA
CTGCCTACGCTGTGTGCTTAAAATGCAGGAATGAGAGGATCTATTGAACC
CTGCATTAGTTCCTATGAAATGGTATATTTTGGTGTTTACATGGAAATTG
CATCCCTTTATGTGCAAACTGTGAGTGTGGGAAAAAAACTACTCCTAGGT
GAAATAGTTTGGCCTTGGGTTGCAACAAAAATGGTTCTAATTTCACTTTA
TTAACCCACCCCTGTGTTAAGGACTTTGCACCACAATAAAAATGGGGTTG
TCTCATAAAAAAAGGAACTTTCCCGCCGCTGGCCATAACCTTTCCAAAAA
AACATTTTTAGGATTCCCCGGAAAGGTTTGCCGGGGGGTTCGGTTTCCCC
AATTTCCACTCAGAAAAATTTTCTCCCCGCCCCTTGGCGGGGCCAAAGAG
GTTTTTTTCTCCCCCCC
back to top