DY258421

Overview
NameDY258421
Unique NameDY258421
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1205
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY258421 vs. ExPASy Swiss-Prot
Match: YDBJ_BACSU (Uncharacterized ABC transporter ATP-binding protein ydbJ OS=Bacillus subtilis GN=ydbJ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.651e-11
Identity = 64/232 (27.59%), Postives = 100/232 (43.10%), Query Frame = 1 
Query:   79 EGNDKP----PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSF-HDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSA-----EHMIFGVEGSDPVRRERLIELLD-IDLQWRMHK----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 729
            EG DK      +    ++ +  G    L+G NGSGKTTL++I+ G        V      S F HDT+             + K + + G I    +F       E++         +  ERL E+++ + L   +H      S G R+R+ I   +LH  K+L+LDE T  LD     D  D  K+  E  G  +++ATH+   +E     +  IQ GE++    L   D+
Sbjct:    9 EGLDKKIGSKQILKQISMDVMEGEIIGLLGPNGSGKTTLIRIIVGLLKQNSGSVTI----SGFQHDTE-------------FEKAMEAVGAIVENPEFYPYLTGWENLKHFANMHKKIADERLDEVVERVGLTSAIHDKVKTYSLGMRQRLGIAQAILHRPKLLILDEPTNGLDPAGMKDFRDHIKELAEMEGTAVLFATHLLREVEDLCDRVIIIQKGEIKAEVSLQGTDQ 223
[Close]
BLAST of DY258421 vs. ExPASy Swiss-Prot
Match: CBIO2_STRPM (Cobalt import ATP-binding protein cbiO 2 OS=Streptococcus pyogenes serotype M28 GN=cbiO2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.651e-11
Identity = 60/227 (26.43%), Postives = 107/227 (47.14%), Query Frame = 1 
Query:   46 SVKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM----VGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV--EGSDPVRRERL--IELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 696
            S+ +  + ++Y+     +    ++ NL I  GS    +G  GSGK+T++++L G H+    +   D   + N S   + + +      ++G  +        E  +  D +     FGV  E ++ + RE+L  + + +   +    ++S GQ RRV I   L    KVL+LDE T  LD   R +L+  FK +  Q G TIV  TH+ D +  +A  +  +  G++
Sbjct:    2 SINLQNVSYTYQAGTPFEGRALFNINLDILDGSYTAFIGHTGSGKSTIMQLLNGLHVPTTGIVSVDKQDITNHSKNKEIKSI----RKHVGLVFQFPESQLFEETVLKDVAFGPQNFGVSPEEAEALAREKLALVGISENLFEKNPFELSGGQMRRVAIAGILAMQPKVLVLDEPTAGLDPKGRKELMTIFK-KLHQSGMTIVLVTHLMDDVANYADFVYVLDKGKI 223
[Close]
BLAST of DY258421 vs. ExPASy Swiss-Prot
Match: CBIO2_STRPF (Cobalt import ATP-binding protein cbiO 2 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=cbiO2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.651e-11
Identity = 60/227 (26.43%), Postives = 107/227 (47.14%), Query Frame = 1 
Query:   46 SVKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM----VGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV--EGSDPVRRERL--IELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 696
            S+ +  + ++Y+     +    ++ NL I  GS    +G  GSGK+T++++L G H+    +   D   + N S   + + +      ++G  +        E  +  D +     FGV  E ++ + RE+L  + + +   +    ++S GQ RRV I   L    KVL+LDE T  LD   R +L+  FK +  Q G TIV  TH+ D +  +A  +  +  G++
Sbjct:    2 SINLQNVSYTYQAGTPFEGRALFNINLDILDGSYTAFIGHTGSGKSTIMQLLNGLHVPTTGIVSVDKQDITNHSKNKEIKSI----RKHVGLVFQFPESQLFEETVLKDVAFGPQNFGVSPEEAEALAREKLALVGISENLFEKNPFELSGGQMRRVAIAGILAMQPKVLVLDEPTAGLDPKGRKELMTIFK-KLHQSGMTIVLVTHLMDDVANYADFVYVLDKGKI 223
[Close]
BLAST of DY258421 vs. ExPASy Swiss-Prot
Match: CBIO2_STRPD (Cobalt import ATP-binding protein cbiO 2 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=cbiO2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.651e-11
Identity = 60/227 (26.43%), Postives = 107/227 (47.14%), Query Frame = 1 
Query:   46 SVKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM----VGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV--EGSDPVRRERL--IELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 696
            S+ +  + ++Y+     +    ++ NL I  GS    +G  GSGK+T++++L G H+    +   D   + N S   + + +      ++G  +        E  +  D +     FGV  E ++ + RE+L  + + +   +    ++S GQ RRV I   L    KVL+LDE T  LD   R +L+  FK +  Q G TIV  TH+ D +  +A  +  +  G++
Sbjct:    2 SINLQNVSYTYQAGTPFEGRALFNINLDILDGSYTAFIGHTGSGKSTIMQLLNGLHVPTTGIVSVDKQDITNHSKNKEIKSI----RKHVGLVFQFPESQLFEETVLKDVAFGPQNFGVSPEEAEALAREKLALVGISENLFEKNPFELSGGQMRRVAIAGILAMQPKVLVLDEPTAGLDPKGRKELMTIFK-KLHQSGMTIVLVTHLMDDVANYADFVYVLDKGKI 223
[Close]
BLAST of DY258421 vs. ExPASy Swiss-Prot
Match: CBIO2_STRPC (Cobalt import ATP-binding protein cbiO 2 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=cbiO2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.651e-11
Identity = 60/227 (26.43%), Postives = 107/227 (47.14%), Query Frame = 1 
Query:   46 SVKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM----VGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV--EGSDPVRRERL--IELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 696
            S+ +  + ++Y+     +    ++ NL I  GS    +G  GSGK+T++++L G H+    +   D   + N S   + + +      ++G  +        E  +  D +     FGV  E ++ + RE+L  + + +   +    ++S GQ RRV I   L    KVL+LDE T  LD   R +L+  FK +  Q G TIV  TH+ D +  +A  +  +  G++
Sbjct:    2 SINLQNVSYTYQAGTPFEGRALFNINLDILDGSYTAFIGHTGSGKSTIMQLLNGLHVPTTGIVSVDKQDITNHSKNKEIKSI----RKHVGLVFQFPESQLFEETVLKDVAFGPQNFGVSPEEAEALAREKLALVGISENLFEKNPFELSGGQMRRVAIAGILAMQPKVLVLDEPTAGLDPKGRKELMTIFK-KLHQSGMTIVLVTHLMDDVANYADFVYVLDKGKI 223
[Close]
BLAST of DY258421 vs. ExPASy Swiss-Prot
Match: CBIO2_STRPB (Cobalt import ATP-binding protein cbiO 2 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=cbiO2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.651e-11
Identity = 60/227 (26.43%), Postives = 107/227 (47.14%), Query Frame = 1 
Query:   46 SVKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM----VGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV--EGSDPVRRERL--IELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 696
            S+ +  + ++Y+     +    ++ NL I  GS    +G  GSGK+T++++L G H+    +   D   + N S   + + +      ++G  +        E  +  D +     FGV  E ++ + RE+L  + + +   +    ++S GQ RRV I   L    KVL+LDE T  LD   R +L+  FK +  Q G TIV  TH+ D +  +A  +  +  G++
Sbjct:    2 SINLQNVSYTYQAGTPFEGRALFNINLDILDGSYTAFIGHTGSGKSTIMQLLNGLHVPTTGIVSVDKQDITNHSKNKEIKSI----RKHVGLVFQFPESQLFEETVLKDVAFGPQNFGVSPEEAEALAREKLALVGISENLFEKNPFELSGGQMRRVAIAGILAMQPKVLVLDEPTAGLDPKGRKELMTIFK-KLHQSGMTIVLVTHLMDDVANYADFVYVLDKGKI 223
[Close]
BLAST of DY258421 vs. ExPASy Swiss-Prot
Match: CBIO1_STRPG (Cobalt import ATP-binding protein cbiO 1 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=cbiO1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.651e-11
Identity = 60/227 (26.43%), Postives = 107/227 (47.14%), Query Frame = 1 
Query:   46 SVKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM----VGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV--EGSDPVRRERL--IELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 696
            S+ +  + ++Y+     +    ++ NL I  GS    +G  GSGK+T++++L G H+    +   D   + N S   + + +      ++G  +        E  +  D +     FGV  E ++ + RE+L  + + +   +    ++S GQ RRV I   L    KVL+LDE T  LD   R +L+  FK +  Q G TIV  TH+ D +  +A  +  +  G++
Sbjct:    2 SINLQNVSYTYQAGTPFEGRALFNINLDILDGSYTAFIGHTGSGKSTIMQLLNGLHVPTTGIVSVDKQDITNHSKNKEIKSI----RKHVGLVFQFPESQLFEETVLKDVAFGPQNFGVSPEEAEALAREKLALVGISENLFEKNPFELSGGQMRRVAIAGILAMQPKVLVLDEPTAGLDPKGRKELMTIFK-KLHQSGMTIVLVTHLMDDVANYADFVYVLDKGKI 223
[Close]
BLAST of DY258421 vs. ExPASy Swiss-Prot
Match: CBIO1_STRP8 (Cobalt import ATP-binding protein cbiO 1 OS=Streptococcus pyogenes serotype M18 GN=cbiO1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.651e-11
Identity = 60/227 (26.43%), Postives = 107/227 (47.14%), Query Frame = 1 
Query:   46 SVKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM----VGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV--EGSDPVRRERL--IELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 696
            S+ +  + ++Y+     +    ++ NL I  GS    +G  GSGK+T++++L G H+    +   D   + N S   + + +      ++G  +        E  +  D +     FGV  E ++ + RE+L  + + +   +    ++S GQ RRV I   L    KVL+LDE T  LD   R +L+  FK +  Q G TIV  TH+ D +  +A  +  +  G++
Sbjct:    2 SINLQNVSYTYQAGTPFEGRALFNINLDILDGSYTAFIGHTGSGKSTIMQLLNGLHVPTTGIVSVDKQDITNHSKNKEIKSI----RKHVGLVFQFPESQLFEETVLKDVAFGPQNFGVSPEEAEALAREKLALVGISENLFEKNPFELSGGQMRRVAIAGILAMQPKVLVLDEPTAGLDPKGRKELMTIFK-KLHQSGMTIVLVTHLMDDVANYADFVYVLDKGKI 223
[Close]
BLAST of DY258421 vs. ExPASy Swiss-Prot
Match: CBIO1_STRP6 (Cobalt import ATP-binding protein cbiO 1 OS=Streptococcus pyogenes serotype M6 GN=cbiO1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.651e-11
Identity = 60/227 (26.43%), Postives = 107/227 (47.14%), Query Frame = 1 
Query:   46 SVKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM----VGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV--EGSDPVRRERL--IELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 696
            S+ +  + ++Y+     +    ++ NL I  GS    +G  GSGK+T++++L G H+    +   D   + N S   + + +      ++G  +        E  +  D +     FGV  E ++ + RE+L  + + +   +    ++S GQ RRV I   L    KVL+LDE T  LD   R +L+  FK +  Q G TIV  TH+ D +  +A  +  +  G++
Sbjct:    2 SINLQNVSYTYQAGTPFEGRALFNINLDILDGSYTAFIGHTGSGKSTIMQLLNGLHVPTTGIVSVDKQDITNHSKNKEIKSI----RKHVGLVFQFPESQLFEETVLKDVAFGPQNFGVSPEEAEALAREKLALVGISENLFEKNPFELSGGQMRRVAIAGILAMQPKVLVLDEPTAGLDPKGRKELMTIFK-KLHQSGMTIVLVTHLMDDVANYADFVYVLDKGKI 223
[Close]
BLAST of DY258421 vs. ExPASy Swiss-Prot
Match: CBIO1_STRP1 (Cobalt import ATP-binding protein cbiO 1 OS=Streptococcus pyogenes serotype M1 GN=cbiO1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.651e-11
Identity = 60/227 (26.43%), Postives = 107/227 (47.14%), Query Frame = 1 
Query:   46 SVKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM----VGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV--EGSDPVRRERL--IELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 696
            S+ +  + ++Y+     +    ++ NL I  GS    +G  GSGK+T++++L G H+    +   D   + N S   + + +      ++G  +        E  +  D +     FGV  E ++ + RE+L  + + +   +    ++S GQ RRV I   L    KVL+LDE T  LD   R +L+  FK +  Q G TIV  TH+ D +  +A  +  +  G++
Sbjct:    2 SINLQNVSYTYQAGTPFEGRALFNINLDILDGSYTAFIGHTGSGKSTIMQLLNGLHVPTTGIVSVDKQDITNHSKNKEIKSI----RKHVGLVFQFPESQLFEETVLKDVAFGPQNFGVSPEEAEALAREKLALVGISENLFEKNPFELSGGQMRRVAIAGILAMQPKVLVLDEPTAGLDPKGRKELMTIFK-KLHQSGMTIVLVTHLMDDVANYADFVYVLDKGKI 223
The following BLAST results are available for this feature:
BLAST of DY258421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
YDBJ_BACSU6.651e-1127.59Uncharacterized ABC transporter ATP-binding protei... [more]
CBIO2_STRPM6.651e-1126.43Cobalt import ATP-binding protein cbiO 2 OS=Strept... [more]
CBIO2_STRPF6.651e-1126.43Cobalt import ATP-binding protein cbiO 2 OS=Strept... [more]
CBIO2_STRPD6.651e-1126.43Cobalt import ATP-binding protein cbiO 2 OS=Strept... [more]
CBIO2_STRPC6.651e-1126.43Cobalt import ATP-binding protein cbiO 2 OS=Strept... [more]
CBIO2_STRPB6.651e-1126.43Cobalt import ATP-binding protein cbiO 2 OS=Strept... [more]
CBIO1_STRPG6.651e-1126.43Cobalt import ATP-binding protein cbiO 1 OS=Strept... [more]
CBIO1_STRP86.651e-1126.43Cobalt import ATP-binding protein cbiO 1 OS=Strept... [more]
CBIO1_STRP66.651e-1126.43Cobalt import ATP-binding protein cbiO 1 OS=Strept... [more]
CBIO1_STRP16.651e-1126.43Cobalt import ATP-binding protein cbiO 1 OS=Strept... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1CG04FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258421 ID=DY258421; Name=DY258421; organism=Citrus clementina; type=EST; length=1205bp
GGAAGGAAAATGGCGGACGGAATGAATGAGAATGAGAAATTGAACAGTGT
CAAAGTATGCGGCATGCAATTTTCTTACGAGGGGAACGATAAGCCTCCTC
TATTCTACGATTTCAACCTCGGTATCTCGCCGGGATCTCGTTGCCTTCTC
GTTGGCGCCAATGGATCTGGAAAAACGACGCTGTTAAAGATTTTGGCGGG
AAAGCATATGGTGGGAGGAAGAGACGTCGTGCAAGTGCTGAACCGATCGT
CGTTTCATGACACTCAACTTGTTTGTAGTGGTGACCTATCTTATCTTGGA
GGATCTTGGAGTAAAACTGTTGGCTCTGCTGGGGAGATTCCACTCCAGGG
AGACTTCTCTGCTGAGCATATGATATTTGGAGTTGAAGGCTCTGATCCTG
TAAGAAGAGAGAGGTTGATTGAGCTACTTGATATTGACCTGCAGTGGCGA
ATGCATAAGGTATCTGATGGACAGCGGCGTCGAGTCCAAATCTGTATGGG
TCTTCTTCATCCTTTTAAGGTGCTTTTGCTGGATGAGATTACAGTGGATC
TAGACGTTGTTGCCAGGATGGATTTACTTGATTTTTTCAAGGATGAATGT
GAGCAGAGAGGAGCTACAATTGTATATGCAACCCATATTTTTGACGGATT
GGAAACATGGGCTACACATCTGGCATACATCCAAGATGGTGAGTTGAGGA
GGGCTGAGAAGTTAGCAGAACTTGATGAGTTGAGGAACTCTACTAACCTA
CTTTCTGTTGTTGAGTCCTGCCTCCGTTCTGAAACCAAGCTTGAGAAGAA
AAGGCCAGTCGATCCTCCTAAACAAGTGCAAAAGACCTCTCCCTTTGGTT
CCTCTCCTTTCTGTCATCCAGACCCATGGCCTACAACCGTTAATCTCCCT
TCATTTCGCATTCCCAAATAGGACAAAAAAATCAAACTAACTTGGACAAA
AAAATAAAAAATGCTTCATATACCTGAATCGGCCCCCTTGATGCCCTACC
CTCCCGGTCAAATAATGAAACCAAAAGGATTGGCATTGGGGCTTGTTTGG
CCCCCGGGGGGGGGCCCCCCTATTTCCCTCCCCCCAATTTTGTTGATTTC
CCCCACCCTGGTCCCCCATTTGGAGGGGGAAAAATTTTTTTTTTTTTTCT
TCTGAAAATTTTAAAAAGGAATTTGGTTCCCCCCCAAAAATTTCCCCCTT
TTTCT
back to top