DY258426

Overview
NameDY258426
Unique NameDY258426
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258426 vs. ExPASy Swiss-Prot
Match: LIMK2_MOUSE (LIM domain kinase 2 OS=Mus musculus GN=Limk2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 4.254e-11
Identity = 47/157 (29.94%), Postives = 81/157 (51.59%), Query Frame = 2
Query:  515 ILGEGGFGC---VYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVHNGSVESHLHGVDKNRGPLDWEARMKIALGAARGLAYLHEDSILLLFIENLSHNVLLENDSPPRAPIFGLP-------KKPP 955
            +LG+G FG    V H     G  + +K L R ++   + F+ EV+++  L H N++K IG+  + +   L+ E +  G+++  L  VD    P  W+ +++ A G + G+AYLH  S+ ++  +  SHN L++ D       FGL        K+PP
Sbjct:  336 VLGKGFFGQAIKVTHKA--TGKVMVMKELIRCDEETQKTFLTEVKVMRSLDHPNVLKFIGVLYKDKKLNLLTEYIEGGTLKDFLRSVD----PFPWQQKVRFAKGISSGMAYLH--SMCIIHRDLNSHNCLIKLDKTVVVADFGLSRLIVEERKRPP 484          
BLAST of DY258426 vs. ExPASy Swiss-Prot
Match: LIMK2_HUMAN (LIM domain kinase 2 OS=Homo sapiens GN=LIMK2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.556e-11
Identity = 44/147 (29.93%), Postives = 78/147 (53.06%), Query Frame = 2
Query:  515 ILGEGGFGC---VYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVHNGSVESHLHGVDKNRGPLDWEARMKIALGAARGLAYLHEDSILLLFIENLSHNVLLENDSPPRAPIFGLPK 946
            +LG+G FG    V H     G  + +K L R ++   + F+ EV+++  L H N++K IG+  + +   L+ E +  G+++  L  +D    P  W+ +++ A G A G+AYLH  S+ ++  +  SHN L++ D       FGL +
Sbjct:  336 VLGKGFFGQAIKVTHKA--TGKVMVMKELIRCDEETQKTFLTEVKVMRSLDHPNVLKFIGVLYKDKKLNLLTEYIEGGTLKDFLRSMD----PFPWQQKVRFAKGIASGMAYLH--SMCIIHRDLNSHNCLIKLDKTVVVADFGLSR 474          
BLAST of DY258426 vs. ExPASy Swiss-Prot
Match: ITK_HUMAN (Tyrosine-protein kinase ITK/TSK OS=Homo sapiens GN=ITK PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.256e-11
Identity = 38/115 (33.04%), Postives = 61/115 (53.04%), Query Frame = 2
Query:  518 LGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVHNGSVESHLHGVDKNRGPLDWEARMKIALGAARGLAYLHEDSIL 862
            +G G FG V+ G   N  +VA+K + R     + +FI E E++ +L H  LV+L G+C+E    CLV+E + +G +  +L      RG    E  + + L    G+AYL E  ++
Sbjct:  369 IGSGQFGLVHLGYWLNKDKVAIKTI-REGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLR---TQRGLFAAETLLGMCLDVCEGMAYLEEACVI 479          
BLAST of DY258426 vs. ExPASy Swiss-Prot
Match: CTR1_ARATH (Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.256e-11
Identity = 58/202 (28.71%), Postives = 91/202 (45.05%), Query Frame = 2
Query:  509 KRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDR--EFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVHNGSVESHLHGVDKNRGPLDWEARMKIALGAARGLAYLHEDSILLLFIENLSHNVLLENDSPPRAPIFGLPKKPPERSQPISTSGQGKLSGMLP------PKNART-----GPFTWVKRNVYTPWG 1075
            K  +G G FG V H    +G++VAVK+L   + + +R  EF+ EV ++ RL H N+V  +G   +     +V E +  GS+   LH     R  LD   R+ +A   A+G+ YLH  +  ++  +  S N+L++     +   FGL +         S S  G    M P      P N ++     G   W    +  PWG
Sbjct:  554 KEKIGAGSFGTV-HRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLH-KSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKASTFLS-SKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWG 752          
BLAST of DY258426 vs. ExPASy Swiss-Prot
Match: LIMK2_CHICK (LIM domain kinase 2 OS=Gallus gallus GN=LIMK2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.477e-11
Identity = 47/156 (30.13%), Postives = 81/156 (51.92%), Query Frame = 2
Query:  515 ILGEGGFGC---VYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVHNGSVESHLHGVDKNRGPLDWEARMKIALGAARGLAYLHEDSILLLFIENLSHNVLLENDSPPRAPIFGLPKK-PPERSQP 970
            +LG+G FG    V H     G  + +K L R ++   + F+ EV+++  L H N++K IG+  + +   L+ E +  G+++  L    +N  P  W+ ++  A G A G+AYLH  S+ ++  +  SHN L++ D       FGL +    ER +P
Sbjct:  336 VLGKGFFGQAIKVTHKA--TGKVMVMKELIRCDEETQKTFLTEVKVMRSLDHPNVLKFIGVLYKDKKLNLLTEYIEGGTLKDFL----RNADPFPWQQKVSFAKGIASGMAYLH--SMCIIHRDLNSHNCLIKLDKTVVVADFGLSRLIVEERKKP 483          
The following BLAST results are available for this feature:
BLAST of DY258426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
LIMK2_MOUSE4.254e-1129.94LIM domain kinase 2 OS=Mus musculus GN=Limk2 PE=1 ... [more]
LIMK2_HUMAN5.556e-1129.93LIM domain kinase 2 OS=Homo sapiens GN=LIMK2 PE=1 ... [more]
ITK_HUMAN7.256e-1133.04Tyrosine-protein kinase ITK/TSK OS=Homo sapiens GN... [more]
CTR1_ARATH7.256e-1128.71Serine/threonine-protein kinase CTR1 OS=Arabidopsi... [more]
LIMK2_CHICK9.477e-1130.13LIM domain kinase 2 OS=Gallus gallus GN=LIMK2 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CH08FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258426 ID=DY258426; Name=DY258426; organism=Citrus clementina; type=EST; length=1290bp
GTTTGATAATACCACAGCAGTTCTGACATATGACAGACTGTGGCATAAGA
AAGTTCCTTTAAATTTGACTCTATTTGGTATTTATGAAGTCATTTATATC
AGCTATCCAGGTATTCCTTCTTCTCCGCCATATGAGAGTTCTACAGAGAG
TGGTCCAAGTGTTAGTGTTGGATCTCTCCCTTTCTCTGCAAACTTTGGAA
ATAAAAATCAGCGGATGAATTTCAGAACCATTGCTATCATTGCTTTGTCT
GCATTTGTACTCTTACTGGTTTTTGTTGGAGCAATATCCATCCTTATAAA
ATGGAGGAAGGCTAGAAAACCATCAAGTGCTGTTGGCCCTGCCTTTGCAT
CATCTATAAACAAAAGATCCGGCATTGGGTCTATCTTATCTAGTAGTATT
GCTAGCTCAACCTCAGTGTCGCTCATGTCCACCATGGCTACTTGTATCCT
CTCTGTTAAAACATTTGCACTTTCTGATCTTGAGAAGGCAACAGAGAAAT
TCAGTTCCAAGAGAATTTTGGGGGAAGGAGGTTTTGGGTGTGTTTACCAT
GGTGTTATGGACAATGGAACTGAAGTTGCAGTGAAGCTGCTAACAAGAAA
TAATCAGAATGGGGACCGTGAATTTATTGCAGAAGTAGAGATGCTAAGCA
GATTACATCATCGTAATCTCGTGAAATTGATCGGTATATGCATTGAAGGA
CGCACGCGCTGCTTGGTGTATGAACTTGTTCACAATGGCAGTGTTGAGTC
ACACCTGCATGGTGTTGACAAGAATAGAGGACCTCTTGACTGGGAAGCAC
GAATGAAGATTGCCCTTGGAGCAGCAAGAGGACTGGCCTATCTTCATGAA
GATTCAATCCTCCTGTTATTCATAGAGAATTTAAGCCATAATGTATTGCT
AGAAAATGACTCCCCCCCAAGGGCCCCGATTTTTGGGTTGCCAAAAAAAC
CACCTGAAAGGAGTCAGCCAATTTCCACCTCCGGCCAGGGGAAACTTTCG
GGTATGTTGCCCCCCAAAAATGCAAGGACCGGGCCTTTTACCTGGGTAAA
AAGGAATGTTTACACCCCTTGGGGGGTTGGGCCGCGCTTGGCCCTTCCTT
CTTGGGAAAAAAAACCCCGGGGAAAATTTTTCCCCCCCCCCCCGGGGGAA
CGGAAAAAAATTTTGGGGGCTCTGGGGGCCCGCCCCCCCCCACTCCAGAC
AAACCCAAAAAAAAAAAGGGGTGTGTGAAGGAACGTTTTGTGGGGTGGTC
TCCCCCTTCCTCTTTGTGGGCGGGGCGAGAAAAACCAACC
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