DY258464

Overview
NameDY258464
Unique NameDY258464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1305
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258464_ssr1254 microsatellite DY258464_ssr1254:1254..1265. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1133 contig Ccv1_Contig1133:1..1305. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 3.076e-33
Identity = 71/115 (61.74%), Postives = 89/115 (77.39%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPKAMEKSKIR 422
            VSMD APYLRK++L  Y +Y ELS+AL  MFS FT+G+ G  E    + ++E KL DL++  +YV +YEDKDGDWMLVGDVP  MF+D+CKRL++MKGSDAI LAP+AMEK K R
Sbjct:  115 VSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGM-IDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSR 228          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA17_ORYSJ (Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.994e-32
Identity = 78/116 (67.24%), Postives = 89/116 (76.72%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPKAMEKSKIRN 425
            VSMD APYLRKV+L TY NY +LS+ALEKMF  FT G+ G         LSES+ KD     EYVLTYEDKDGDWMLVGDVP EMF +SC+RL+IMKGSDAI LAP+A++KSK RN
Sbjct:  156 VSMDGAPYLRKVDLKTYKNYKDLSTALEKMFIGFTTGKDG---------LSESR-KD----GEYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMKGSDAIGLAPRAVDKSKNRN 257          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA19_ORYSJ (Auxin-responsive protein IAA19 OS=Oryza sativa subsp. japonica GN=IAA19 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 4.442e-32
Identity = 64/112 (57.14%), Postives = 86/112 (76.79%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPKAMEKS 413
            VSMD APYLRKV+L TY++Y +LS ALEKMFSCF  G+  SH+   R+ L++    D L   EYVLTYEDKD DWMLVGD+P ++F  SC++L+IM+GSDA  +AP+++E++
Sbjct:  166 VSMDGAPYLRKVDLKTYSSYEDLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQEYVLTYEDKDADWMLVGDLPWDLFTTSCRKLRIMRGSDAAGMAPRSLEQT 277          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSJ (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. japonica GN=IAA5 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 3.761e-31
Identity = 64/112 (57.14%), Postives = 83/112 (74.11%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPKAMEKS 413
            VSMD APYLRKV+L  Y++Y +LS ALEKMFSCF  GQ G  ++  R+ L+     D L   EYVLTYEDKD DWMLVGD+P ++F   C++LKIM+GSDA  +AP+++E+S
Sbjct:  156 VSMDGAPYLRKVDLKMYSSYEDLSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGIAPRSIEQS 267          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSI (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. indica GN=IAA5 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 3.761e-31
Identity = 64/112 (57.14%), Postives = 83/112 (74.11%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPKAMEKS 413
            VSMD APYLRKV+L  Y++Y +LS ALEKMFSCF  GQ G  ++  R+ L+     D L   EYVLTYEDKD DWMLVGD+P ++F   C++LKIM+GSDA  +AP+++E+S
Sbjct:  157 VSMDGAPYLRKVDLKMYSSYEDLSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGIAPRSIEQS 268          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA3_ORYSJ (Auxin-responsive protein IAA3 OS=Oryza sativa subsp. japonica GN=IAA3 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.184e-30
Identity = 73/116 (62.93%), Postives = 82/116 (70.69%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPKAMEKSKIRN 425
            VSMD APYLRKV+L TY NY ++S  LEKMF  F+ G+ G+              KD     EYVLTYEDKDGDWMLVGDVP EMF DSC+RL+IMKGSDAI LAP+A EKSK RN
Sbjct:  163 VSMDGAPYLRKVDLKTYKNYKDMSLGLEKMFIGFSTGKEGAENQ-----------KD----GEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSDAIGLAPRAGEKSKNRN 263          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSJ (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 9.586e-27
Identity = 65/113 (57.52%), Postives = 80/113 (70.80%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPKAMEKSK 416
            VSMD APYLRKV+L  Y +Y +LS AL+KMF  FT        A G  M       + ++GS+ V TYEDKDGDWMLVGDVP +MF++SCKRL+IMKGS+AI LAP+A +K K
Sbjct:  136 VSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFT--------ATGNNM-------NEVNGSDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAKDKYK 233          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSI (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 9.586e-27
Identity = 65/113 (57.52%), Postives = 80/113 (70.80%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPKAMEKSK 416
            VSMD APYLRKV+L  Y +Y +LS AL+KMF  FT        A G  M       + ++GS+ V TYEDKDGDWMLVGDVP +MF++SCKRL+IMKGS+AI LAP+A +K K
Sbjct:  136 VSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFT--------ATGNNM-------NEVNGSDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAKDKYK 233          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA23_ORYSJ (Auxin-responsive protein IAA23 OS=Oryza sativa subsp. japonica GN=IAA23 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.610e-24
Identity = 60/131 (45.80%), Postives = 81/131 (61.83%), Query Frame = 3
Query:    9 WQPHQ*FLRNYTVXXXXXXXXXXVSMDRAPYLRKVNLTTYTNYGELSSALEKMF-SCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPK 398
            W P + + RN             V++D APYLRKV+L  +  Y  L  AL  MF SC  +   G  +  G      +KL DL+ G+EYV TYEDKDGDWMLVGDVP +MF++SCKR+++MK S+A+ L+P+
Sbjct:   65 WPPVRAYRRNALREDSARAKLVKVAVDGAPYLRKVDLAAHAGYAPLLRALHGMFASCLAVRGGGGGDGEG------TKLVDLVTGAEYVPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMKSSEAVNLSPR 189          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.610e-24
Identity = 58/109 (53.21%), Postives = 79/109 (72.48%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALE-KMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPKA 401
            V++D APYLRKV+L  Y  Y +L +AL+ K FS FTI + G+ E          KL D + G+EYV TYEDKDGDWMLVGDVP +MF+++C+RL++MK S+A+ LAP++
Sbjct:  112 VAVDGAPYLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGNEEM---------KLVDAVSGNEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPRS 211          
The following BLAST results are available for this feature:
BLAST of DY258464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
IAA17_ARATH3.076e-3361.74Auxin-responsive protein IAA17 OS=Arabidopsis thal... [more]
IAA17_ORYSJ1.994e-3267.24Auxin-responsive protein IAA17 OS=Oryza sativa sub... [more]
IAA19_ORYSJ4.442e-3257.14Auxin-responsive protein IAA19 OS=Oryza sativa sub... [more]
IAA5_ORYSJ3.761e-3157.14Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA5_ORYSI3.761e-3157.14Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA3_ORYSJ3.184e-3062.93Auxin-responsive protein IAA3 OS=Oryza sativa subs... [more]
IAA13_ORYSJ9.586e-2757.52Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA13_ORYSI9.586e-2757.52Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA23_ORYSJ2.610e-2445.80Auxin-responsive protein IAA23 OS=Oryza sativa sub... [more]
IAA15_ORYSJ2.610e-2453.21Auxin-responsive protein IAA15 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1DF04FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258464 ID=DY258464; Name=DY258464; organism=Citrus clementina; type=EST; length=1305bp
TAAGACACTGGCAGCCACATCAATAATTCCTGAGGAATTACACCGTTGCC
GCTGCTCTGGAGCTCTTTTTATTACTAGTTAGCATGGACAGAGCTCCTTA
TTTGAGGAAAGTAAATTTAACAACATACACCAATTATGGGGAACTATCTT
CTGCTCTGGAGAAGATGTTCAGTTGCTTTACAATTGGTCAATGTGGATCA
CATGAAGCACCAGGGAGGGAAATGCTGAGTGAGAGCAAGTTGAAAGATCT
TTTGCATGGATCAGAATATGTGCTTACATATGAGGACAAGGATGGTGACT
GGATGCTCGTTGGGGATGTGCCGCGGGAGATGTTTATTGATTCATGCAAG
CGATTAAAGATCATGAAAGGTTCTGATGCCATTGCCTTAGCTCCCAAGGC
AATGGAAAAATCCAAGATCAGGAACTAGTGAATGTCTGTCTGGGATGGGG
TGCCTTCTAGTTCATGCCTTTCATGGGTAGGAGGAGACTGGGTTGATGAT
AAGTTAAAAAGGACAGGATGGCATGGGCAAGATGCAAGTTTGCGGTTCAG
TTGTGTATCCTGTTTGTTAACATGAGGCTTGCGTTACTTGTTTACGTTCG
GAAGAAGTCTATGTTTATGATATGATTGATGTCAAACCCTGTTGAAACAC
AAACAAATTTAGGATTCGTGGAAGTACACATCTATCTAGTGACTGGGATC
TTAATAAAAAAATAAAAAAACAAAAAAAAACCCCACTCTCTTGCACAACT
TTGGCATTAAAAGAAAGGATCGCTAAACAATATTCCTGACACACACCCCC
CCCTCTCCAACCAACTTCAAAATCCTAATTTGCCTCACCACGAACCAACC
CCAACCCCGGCTCCCAATTAACTAGGCCAAACACTCATACCCCGCAACTC
CGCGCCCTGGTCCCCAATATCAGAACTACAACTTCCCCCTCAACAAACAC
ACTCCACCCCTAACCCCAAACACCCCTCCTCCCTTTCCACTGTCTTCTCC
CCTAATTTTTCTCCCTCCACTTCCCCCCCCCCTCACCCCCCCGACATAAC
TTCGCTTTCATATTGTCTAGGAATCACCCACATCGCGCAGCACTTTCCCA
CTACGACCACCTACCTCCTCCACATCCTACCCCGCTCTTCACCTCCTATA
CCCTCCTCCCCCTACCCCACTACACTCACTTTACCTATTTATATTCCCAC
CCCACTACACACCCAGTCTTACTAATNAAACCCGTCTCCCAAAATACATT
CTCCCACCACCACCACCTACCCTTCTTACGCANACCGTCAGTACGACCAG
TGACC
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