DY258464

Overview
NameDY258464
Unique NameDY258464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1305
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.453e-24
Identity = 58/111 (52.25%), Postives = 79/111 (71.17%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALE-KMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPKAME 407
            V++D APYLRKV+L  Y+ Y +L  AL+ K FS FTI +             E KL D ++G+EYV TYEDKDGDWMLVGDVP +MF+++C+RL++MK S+A+ LAP+A +
Sbjct:   98 VAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTIRKFAD---------DERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPRAAQ 199          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA2_ARATH (Auxin-responsive protein IAA2 OS=Arabidopsis thaliana GN=IAA2 PE=2 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 2.443e-22
Identity = 59/104 (56.73%), Postives = 68/104 (65.38%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIAL 389
            VSMD APYLRK++L TY NY EL  ALE MF               + M+ E   ++   GS +V TYEDKDGDWMLVGDVP +MF  SCKRL+IMKGSDA AL
Sbjct:   82 VSMDGAPYLRKIDLKTYKNYPELLKALENMF---------------KVMIGEYCEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCKRLRIMKGSDAPAL 170          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA4_PEA (Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA4/5 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.168e-22
Identity = 60/127 (47.24%), Postives = 71/127 (55.91%), Query Frame = 3
Query:    9 WQPHQ*FLRNYTVXXXXXXXXXXVSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIAL 389
            W P + + +N             VSMD APYLRK++L  Y  Y EL  ALE MF   TIG+    E                 GSEY  TYEDKDGDWMLVGDVP +MF+ SCKRL+IMKG++A  L
Sbjct:   74 WPPIRSYRKNSLHEADVGGIFVKVSMDGAPYLRKIDLRVYGGYSELLKALETMFK-LTIGEYSEREG--------------YKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGTEAKGL 185          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: AX22B_PHAAU (Auxin-induced protein 22B OS=Phaseolus aureus GN=AUX22B PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.443e-22
Identity = 61/127 (48.03%), Postives = 70/127 (55.12%), Query Frame = 3
Query:    9 WQPHQ*FLRNYTVXXXXXXXXXXVSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIAL 389
            W P + + +N             VSMD APYLRKV+L  Y  Y EL  ALE MF    IG+    E                 GSEY  TYEDKDGDWMLVGDVP +MF+ SCKRL+IMKGS+A  L
Sbjct:   81 WPPIRSYRKNSVQEGEGDGIFVKVSMDGAPYLRKVDLKVYGGYPELLKALETMFK-LAIGEYSEREG--------------YKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGL 192          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA4_ARATH (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 9.284e-22
Identity = 56/104 (53.85%), Postives = 67/104 (64.42%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIAL 389
            VSMD APYLRK++LT Y  Y EL  +LE MF  F++G+    E                 GS++V TYEDKDGDWMLVGDVP EMF+ SCKRL+IMKGS+   L
Sbjct:   93 VSMDGAPYLRKIDLTMYKQYPELMKSLENMFK-FSVGEYFEREG--------------YKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKGL 181          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA6_PEA (Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA6 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.068e-21
Identity = 63/113 (55.75%), Postives = 71/113 (62.83%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDA--IALAPKAMEK 410
            VSMD APYLRK++L  +  Y EL+ ALEK+F C     CG  EA          LKD     E+V  YEDKDGDWMLVGDVP EMFI+SCKRL+IMK SDA    L PK   K
Sbjct:   80 VSMDGAPYLRKIDLCLHKGYLELALALEKLFDC-----CGIEEA----------LKDA-ENCEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFDLQPKGSLK 176          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: AX22D_PHAAU (Auxin-induced protein 22D OS=Phaseolus aureus GN=AUX22D PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.068e-21
Identity = 55/104 (52.88%), Postives = 65/104 (62.50%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIAL 389
            VSM  APYLRK++L  Y +Y EL  ALE MF C               +  E   ++  +GSEY  TYEDKDGDWMLVGDVP  MF+ SCKRL+IMKGS+A  L
Sbjct:  102 VSMAGAPYLRKIDLKVYKSYPELLKALENMFKC---------------IFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIMKGSEAKGL 190          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA3_ARATH (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.528e-21
Identity = 56/104 (53.85%), Postives = 69/104 (66.35%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIAL 389
            VSMD APYLRK++L+ Y  Y EL  ALE MF  F++G+                 +D   GS++V TYEDKDGDWML+GDVP EMFI +CKRL+IMKGS+A  L
Sbjct:   97 VSMDGAPYLRKIDLSCYKGYSELLKALEVMFK-FSVGEYFE--------------RDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKGSEAKGL 185          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA1_ARATH (Auxin-responsive protein IAA1 OS=Arabidopsis thaliana GN=IAA1 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 6.018e-21
Identity = 55/101 (54.46%), Postives = 65/101 (64.36%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDA 380
            VSMD APYLRK++L  Y NY EL  ALE MF  FT+G+    E                 GS +V TYEDKDGDWMLVGDVP +MF  SC++L+IMKGS+A
Sbjct:   79 VSMDGAPYLRKIDLKMYKNYPELLKALENMFK-FTVGEYSEREG--------------YKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCQKLRIMKGSEA 164          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: AX22E_PHAAU (Auxin-induced protein 22E OS=Phaseolus aureus GN=AUX22E PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.027e-20
Identity = 54/104 (51.92%), Postives = 65/104 (62.50%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIAL 389
            VSM  APYLRK++L  Y +Y EL  AL+ +F C T G+    E                +GSEY  TYEDKDGDWMLVGDVP  MF+ SCKRL+I+KGS+A  L
Sbjct:  112 VSMAGAPYLRKIDLKVYKSYPELLKALQNLFKC-TFGEYSEREG--------------YNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIIKGSEAKGL 200          
The following BLAST results are available for this feature:
BLAST of DY258464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
IAA1_ORYSJ4.453e-2452.25Auxin-responsive protein IAA1 OS=Oryza sativa subs... [more]
IAA2_ARATH2.443e-2256.73Auxin-responsive protein IAA2 OS=Arabidopsis thali... [more]
IAA4_PEA4.168e-2247.24Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA... [more]
AX22B_PHAAU5.443e-2248.03Auxin-induced protein 22B OS=Phaseolus aureus GN=A... [more]
IAA4_ARATH9.284e-2253.85Auxin-responsive protein IAA4 OS=Arabidopsis thali... [more]
IAA6_PEA2.068e-2155.75Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA... [more]
AX22D_PHAAU2.068e-2152.88Auxin-induced protein 22D OS=Phaseolus aureus GN=A... [more]
IAA3_ARATH3.528e-2153.85Auxin-responsive protein IAA3 OS=Arabidopsis thali... [more]
IAA1_ARATH6.018e-2154.46Auxin-responsive protein IAA1 OS=Arabidopsis thali... [more]
AX22E_PHAAU1.027e-2051.92Auxin-induced protein 22E OS=Phaseolus aureus GN=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1DF04FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258464 ID=DY258464; Name=DY258464; organism=Citrus clementina; type=EST; length=1305bp
TAAGACACTGGCAGCCACATCAATAATTCCTGAGGAATTACACCGTTGCC
GCTGCTCTGGAGCTCTTTTTATTACTAGTTAGCATGGACAGAGCTCCTTA
TTTGAGGAAAGTAAATTTAACAACATACACCAATTATGGGGAACTATCTT
CTGCTCTGGAGAAGATGTTCAGTTGCTTTACAATTGGTCAATGTGGATCA
CATGAAGCACCAGGGAGGGAAATGCTGAGTGAGAGCAAGTTGAAAGATCT
TTTGCATGGATCAGAATATGTGCTTACATATGAGGACAAGGATGGTGACT
GGATGCTCGTTGGGGATGTGCCGCGGGAGATGTTTATTGATTCATGCAAG
CGATTAAAGATCATGAAAGGTTCTGATGCCATTGCCTTAGCTCCCAAGGC
AATGGAAAAATCCAAGATCAGGAACTAGTGAATGTCTGTCTGGGATGGGG
TGCCTTCTAGTTCATGCCTTTCATGGGTAGGAGGAGACTGGGTTGATGAT
AAGTTAAAAAGGACAGGATGGCATGGGCAAGATGCAAGTTTGCGGTTCAG
TTGTGTATCCTGTTTGTTAACATGAGGCTTGCGTTACTTGTTTACGTTCG
GAAGAAGTCTATGTTTATGATATGATTGATGTCAAACCCTGTTGAAACAC
AAACAAATTTAGGATTCGTGGAAGTACACATCTATCTAGTGACTGGGATC
TTAATAAAAAAATAAAAAAACAAAAAAAAACCCCACTCTCTTGCACAACT
TTGGCATTAAAAGAAAGGATCGCTAAACAATATTCCTGACACACACCCCC
CCCTCTCCAACCAACTTCAAAATCCTAATTTGCCTCACCACGAACCAACC
CCAACCCCGGCTCCCAATTAACTAGGCCAAACACTCATACCCCGCAACTC
CGCGCCCTGGTCCCCAATATCAGAACTACAACTTCCCCCTCAACAAACAC
ACTCCACCCCTAACCCCAAACACCCCTCCTCCCTTTCCACTGTCTTCTCC
CCTAATTTTTCTCCCTCCACTTCCCCCCCCCCTCACCCCCCCGACATAAC
TTCGCTTTCATATTGTCTAGGAATCACCCACATCGCGCAGCACTTTCCCA
CTACGACCACCTACCTCCTCCACATCCTACCCCGCTCTTCACCTCCTATA
CCCTCCTCCCCCTACCCCACTACACTCACTTTACCTATTTATATTCCCAC
CCCACTACACACCCAGTCTTACTAATNAAACCCGTCTCCCAAAATACATT
CTCCCACCACCACCACCTACCCTTCTTACGCANACCGTCAGTACGACCAG
TGACC
back to top