DY258464

Overview
NameDY258464
Unique NameDY258464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1305
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA10_ARATH (Auxin-responsive protein IAA10 OS=Arabidopsis thaliana GN=IAA10 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.032e-13
Identity = 45/100 (45.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGS-EYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGS 374
            V+MD     RKV+L    +Y  L   L+ MF         S+   G + + E+    LL GS EY++TY+DKDGDWMLVGDVP +MF+ S  RL+IMK S
Sbjct:  156 VTMDGVIIGRKVDLNALDSYAALEKTLDLMFFQIPSPVTRSN-TQGYKTIKETCTSKLLDGSSEYIITYQDKDGDWMLVGDVPWQMFLGSVTRLRIMKTS 254          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA6_ORYSJ (Auxin-responsive protein IAA6 OS=Oryza sativa subsp. japonica GN=IAA6 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.878e-13
Identity = 41/102 (40.20%), Postives = 64/102 (62.75%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKL-KDLLHGS-EYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSD 377
            ++MD  P  RK++L  Y +Y  LSSA++++F  F   Q     A   +  ++ K+   LL GS EY L YED +GD MLVGDVP ++F+ + KRL++++ S+
Sbjct:  222 INMDGIPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSE 323          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA18_ORYSJ (Auxin-responsive protein IAA18 OS=Oryza sativa subsp. japonica GN=IAA18 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.344e-12
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKL-KDLLHGSE-YVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSD 377
            ++MD  P  RKV+L  Y +Y +LSSA+E++F  F   Q     A   E  +E K+   LL G+  Y L YED DGD ML GD+P ++F+ + KRL++M+ S+
Sbjct:  214 INMDGIPIGRKVDLQIYDSYQKLSSAVEELFRGFLEAQKDLSCAESGEQGAEDKIFSGLLDGTGVYTLVYEDNDGDRMLAGDIPWKVFVSTVKRLRVMRRSE 315          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA7_ORYSJ (Auxin-responsive protein IAA7 OS=Oryza sativa subsp. japonica GN=IAA7 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.106e-12
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSES-KLKDLLHGS-EYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSD 377
            ++MD  P  RK++L  + +Y +LS A++K+F      Q     A  ++   E   +  LL G+ EY L YED +GD +LVGDVP  MF+ S KRL+++K SD
Sbjct:  182 INMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA28_ARATH (Auxin-responsive protein IAA28 OS=Arabidopsis thaliana GN=IAA28 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.669e-12
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPK 398
            ++M+  P  RKVNL+ Y NY +LS A++++FS                   +    DL    +Y L YED +GD +LVGDVP EMF+ + KRL ++K S A +L+P+
Sbjct:   85 INMEGVPIGRKVNLSAYNNYQQLSHAVDQLFS-------------------KKDSWDL--NRQYTLVYEDTEGDKVLVGDVPWEMFVSTVKRLHVLKTSHAFSLSPR 170          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA18_ARATH (Auxin-responsive protein IAA18 OS=Arabidopsis thaliana GN=IAA18 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.486e-11
Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGS-EYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSD 377
            ++M   P  RKV+L+ + +Y +LS  ++K+F      Q    + P   +  E  +  LL G+ EY LTYED +GD MLVGDVP +MF+ S KRL+++K S+
Sbjct:  154 INMYGVPIGRKVDLSAHNSYEQLSFTVDKLFRGLLAAQ---RDFPS-SIEDEKPITGLLDGNGEYTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKTSE 250          
The following BLAST results are available for this feature:
BLAST of DY258464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
IAA10_ARATH6.032e-1345.00Auxin-responsive protein IAA10 OS=Arabidopsis thal... [more]
IAA6_ORYSJ7.878e-1340.20Auxin-responsive protein IAA6 OS=Oryza sativa subs... [more]
IAA18_ORYSJ1.344e-1242.16Auxin-responsive protein IAA18 OS=Oryza sativa sub... [more]
IAA7_ORYSJ5.106e-1240.20Auxin-responsive protein IAA7 OS=Oryza sativa subs... [more]
IAA28_ARATH6.669e-1238.32Auxin-responsive protein IAA28 OS=Arabidopsis thal... [more]
IAA18_ARATH1.486e-1140.59Auxin-responsive protein IAA18 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1DF04FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258464 ID=DY258464; Name=DY258464; organism=Citrus clementina; type=EST; length=1305bp
TAAGACACTGGCAGCCACATCAATAATTCCTGAGGAATTACACCGTTGCC
GCTGCTCTGGAGCTCTTTTTATTACTAGTTAGCATGGACAGAGCTCCTTA
TTTGAGGAAAGTAAATTTAACAACATACACCAATTATGGGGAACTATCTT
CTGCTCTGGAGAAGATGTTCAGTTGCTTTACAATTGGTCAATGTGGATCA
CATGAAGCACCAGGGAGGGAAATGCTGAGTGAGAGCAAGTTGAAAGATCT
TTTGCATGGATCAGAATATGTGCTTACATATGAGGACAAGGATGGTGACT
GGATGCTCGTTGGGGATGTGCCGCGGGAGATGTTTATTGATTCATGCAAG
CGATTAAAGATCATGAAAGGTTCTGATGCCATTGCCTTAGCTCCCAAGGC
AATGGAAAAATCCAAGATCAGGAACTAGTGAATGTCTGTCTGGGATGGGG
TGCCTTCTAGTTCATGCCTTTCATGGGTAGGAGGAGACTGGGTTGATGAT
AAGTTAAAAAGGACAGGATGGCATGGGCAAGATGCAAGTTTGCGGTTCAG
TTGTGTATCCTGTTTGTTAACATGAGGCTTGCGTTACTTGTTTACGTTCG
GAAGAAGTCTATGTTTATGATATGATTGATGTCAAACCCTGTTGAAACAC
AAACAAATTTAGGATTCGTGGAAGTACACATCTATCTAGTGACTGGGATC
TTAATAAAAAAATAAAAAAACAAAAAAAAACCCCACTCTCTTGCACAACT
TTGGCATTAAAAGAAAGGATCGCTAAACAATATTCCTGACACACACCCCC
CCCTCTCCAACCAACTTCAAAATCCTAATTTGCCTCACCACGAACCAACC
CCAACCCCGGCTCCCAATTAACTAGGCCAAACACTCATACCCCGCAACTC
CGCGCCCTGGTCCCCAATATCAGAACTACAACTTCCCCCTCAACAAACAC
ACTCCACCCCTAACCCCAAACACCCCTCCTCCCTTTCCACTGTCTTCTCC
CCTAATTTTTCTCCCTCCACTTCCCCCCCCCCTCACCCCCCCGACATAAC
TTCGCTTTCATATTGTCTAGGAATCACCCACATCGCGCAGCACTTTCCCA
CTACGACCACCTACCTCCTCCACATCCTACCCCGCTCTTCACCTCCTATA
CCCTCCTCCCCCTACCCCACTACACTCACTTTACCTATTTATATTCCCAC
CCCACTACACACCCAGTCTTACTAATNAAACCCGTCTCCCAAAATACATT
CTCCCACCACCACCACCTACCCTTCTTACGCANACCGTCAGTACGACCAG
TGACC
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