DY258490

Overview
NameDY258490
Unique NameDY258490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length980
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258490 vs. ExPASy Swiss-Prot
Match: RYH1_SCHPO (GTP-binding protein ryh1 OS=Schizosaccharomyces pombe GN=ryh1 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.344e-32
Identity = 68/164 (41.46%), Postives = 107/164 (65.24%), Query Frame = 1
Query:  235 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 726
            + KLV LG+  VGK+ ++ RF+  QFD T + T+G  FLS+T+ L+D T V+ ++WDTAGQER+ +L P Y R        YDIT+ +SF   + W+++++     D+++ LVGNK DL +KR+V  ++G + A++  +  +ETSAK   N+  LF +IA+ LP
Sbjct:   11 KFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLP 173          
BLAST of DY258490 vs. ExPASy Swiss-Prot
Match: RB18A_LYMST (Ras-related protein Rab-18A OS=Lymnaea stagnalis GN=RAB18A PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.756e-32
Identity = 76/182 (41.76%), Postives = 110/182 (60.44%), Query Frame = 1
Query:  238 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP-DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS*LWILKSELLCL 780
            +K++++G+SGVGKS ++LRF    FDP    T+G  F  +T+ ++ + T K  IWDTAGQER+  L P YYRG       YD++S  SFNK   W+ EL+   +  D+V  LVGNK D     EV   +G+++A K+ M FIE SAKT D +   FEE+ +++ + +P   LW   S+ L L
Sbjct:   10 LKILIIGESGVGKSSLLLRFTEDTFDPEQAATIGVDFKVKTLTVEGNKT-KLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVSSKQSFNKLDAWLNELETFSTKHDMVKMLVGNKID-RANHEVTKDEGLKFARKHHMLFIEASAKTNDGVQCAFEELVEKIIQ-TPG--LWETSSKNLTL 186          
BLAST of DY258490 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.756e-32
Identity = 67/171 (39.18%), Postives = 104/171 (60.82%), Query Frame = 1
Query:  217 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 729
            S A +  +KL+L+GDSGVGKSC++LRF    F P+   T+G  F  +TI L+    +K +IWDTAGQER+  +   YYRG       YD+T   SF   + W++ +++H +  +   L+GNK D+ EK+ V +  G   A++ G+ F+ETSAK + N+ + F  +AK + +
Sbjct:    9 SAAYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKR-IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKK 178          
BLAST of DY258490 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 2.293e-32
Identity = 67/154 (43.51%), Postives = 98/154 (63.64%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 702
            KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +T+  QD  T+K +IWDTAGQER+  +   YYRG       YD+T  +SFN  + W+ E+ ++ S ++   LVGNK+DL E R +P +    +A++ G+ F+ETSAK A N+ Q F
Sbjct:   10 KLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVE-QDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAF 162          
BLAST of DY258490 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.995e-32
Identity = 66/172 (38.37%), Postives = 105/172 (61.05%), Query Frame = 1
Query:  214 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 729
            S+ + +  +KL+L+GDSGVGKSC++LRF    F P+   T+G  F  +TI L D   +K +IWDTAGQER+  +   YYRG       YD+T   SF+  + W   +++H S ++   L+GNK D  ++R+V  + G   A++ G+ F+E SAKT  N+++ F  +A+ + +
Sbjct:    2 STKSYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKK 172          
BLAST of DY258490 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.995e-32
Identity = 72/186 (38.71%), Postives = 111/186 (59.68%), Query Frame = 1
Query:  199 LENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKR----LPRPSPSS 744
            + + GS +  +   K+VL+GDSGVGKS ++ RF R +F   +K T+G  F ++TI  +  T +K ++WDTAGQERY A+   YYRG       YDI    ++   + W+ EL+++   +I + LVGNK+DL   REV   +  E++EK+ + FIETSA  + N+   F+ I  +    + RPS S+
Sbjct:    1 MTSKGSQEEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKT-IKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQIYHIMSRPSHST 185          
BLAST of DY258490 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.995e-32
Identity = 72/165 (43.64%), Postives = 101/165 (61.21%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRL 723
            KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQER+  +   YYRG       YD+T  +SFN  + W++E+ ++ S ++   LVGNK DL  K+ V      E+A+  G+ F+ETSAK A N+ Q F     EI KR+
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 173          
BLAST of DY258490 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.995e-32
Identity = 68/161 (42.24%), Postives = 100/161 (62.11%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            KLVL+GDSGVGKS ++ RF + +F+  SK T+G  F ++T  ++    VK +IWDTAGQERY A+   YYRG       YD+T   +F  A  W++EL+ H  P+IV+ L+GNK DL     V  ++   +AE+  ++F+ETSA  A N+   F E+  ++
Sbjct:   15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKV-VKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQI 174          
BLAST of DY258490 vs. ExPASy Swiss-Prot
Match: RBH1B_ARATH (Ras-related protein RABH1B OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.912e-32
Identity = 71/164 (43.29%), Postives = 100/164 (60.98%), Query Frame = 1
Query:  235 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 726
            + KLV LGD  VGK+ I+ RF+  +FD T + T+G  FLS+T+ L+D T V+ ++WDTAGQER+ +L P Y R        YD+ S  SF     W+ E++     D+++ LVGNK DL +KR+V  ++    A +  + FIETSAK   NI  LF +IA  LP
Sbjct:    9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLVGNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171          
BLAST of DY258490 vs. ExPASy Swiss-Prot
Match: RAB21_GEOCY (Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.912e-32
Identity = 75/184 (40.76%), Postives = 109/184 (59.24%), Query Frame = 1
Query:  208 AGSSDAKNLR-----VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 744
            A  SDA   R      K+VLLG+  VGK+ +VLR+   +F+   + T+ ASF+ + + +     ++  IWDTAGQERY AL P+YYR        YDIT  DSF+KA+ W+KEL++     + + +VGNK DL  +R V  +D +EYAE  G     TSAK +  + +LF ++AKR+   +P S
Sbjct:    2 ASPSDASRRRQATVKAKVVLLGEGAVGKTSLVLRYSENKFNDKHEQTLQASFVEKRLNI-GGKRIQLAIWDTAGQERYHALGPIYYRDSQGAIIVYDITDEDSFHKARNWIKELKRMLGDKVTLCIVGNKIDLDRQRTVSEKDALEYAESVGAKHYYTSAKQSKGVAELFLDLAKRILEANPPS 184          
The following BLAST results are available for this feature:
BLAST of DY258490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RYH1_SCHPO1.344e-3241.46GTP-binding protein ryh1 OS=Schizosaccharomyces po... [more]
RB18A_LYMST1.756e-3241.76Ras-related protein Rab-18A OS=Lymnaea stagnalis G... [more]
RAB8A_DICDI1.756e-3239.18Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RBD2A_ARATH2.293e-3243.51Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
YPT2_SCHPO2.995e-3238.37GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RB11A_DICDI2.995e-3238.71Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RAB1_DISOM2.995e-3243.64Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAA1A_ARATH2.995e-3242.24Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RBH1B_ARATH3.912e-3243.29Ras-related protein RABH1B OS=Arabidopsis thaliana... [more]
RAB21_GEOCY3.912e-3240.76Ras-related protein Rab-21 OS=Geodia cydonium GN=R... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2AB01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258490 ID=DY258490; Name=DY258490; organism=Citrus clementina; type=EST; length=980bp
CATCCGAAGCACTGCAGCAAATCAGCAATCAATCTGCTCATCGCAAAATC
ACTCCACTACTAATACCCTAATTACACATATACGTGCATACGCATACTTA
TATACATACTCGTTTATATATTTATTCTTACAGGTCGAATGGGTTGCTCA
GGTTCTGTTCCAGCTAGGAGTTCTGGCCAGTCCGGTGGACTTAACAACTT
GGAAAATGCAGGGTCATCTGATGCAAAAAACCTACGTGTTAAGCTGGTTC
TGTTAGGTGATTCAGGTGTTGGGAAAAGTTGTATTGTTCTTCGCTTTGTT
CGTGGCCAGTTTGACCCTACCTCCAAGGTAACTGTTGGAGCCTCATTCTT
GTCACAGACGATAGCTTTGCAAGATTCTACAACAGTTAAGTTTGAAATAT
GGGATACAGCTGGTCAAGAAAGATATGCTGCTCTGGCACCACTATATTAC
AGAGGTGCTGCAGTCGCAGTTGTTGTGTATGATATAACTAGTCCAGATTC
ATTCAACAAAGCGCAATACTGGGTTAAGGAGCTACAAAAACATGGAAGTC
CTGACATAGTCATGGCTTTAGTTGGTAACAAGGCTGATCTTCATGAGAAG
CGAGAAGTACCAGCTCAAGATGGCATTGAGTATGCGGAGAAGAATGGGAT
GTTCTTTATCGAAACATCGGCCAAGACTGCAGATAATATAAATCAGCTGT
TTGAGGAAATTGCTAAGCGACTTCCCCGCCCATCACCTTCTTCATGATTG
TGGATTCTGAAATCTGAACTGCTGTGTCTGCTGATGTAACGCCGAATCCT
GTCAGTTTGTCATATCAAAGATTTGTGGATATTGTGATATATGAATGTGG
TTCCTGTTTCATTTTGCAACTGGATTATGATTTAAGAATCTCACTTGGAA
AACTTCTGTTGCAACCTTAAATCTTAAGGGGGAAATAAACTTTTAAACGC
CCCAAGGAGGCAACCAAAGAATTGAAATTT
back to top