DY258490

Overview
NameDY258490
Unique NameDY258490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length980
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258490 vs. ExPASy Swiss-Prot
Match: RAB34_HUMAN (Ras-related protein Rab-34 OS=Homo sapiens GN=RAB34 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.919e-17
Identity = 45/161 (27.95%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP-DIVMALVGNKADLHEKRE--VPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 714
            K++++GD  VGK+C++ RF +  FD   K T+G  F  +   +        ++WDTAGQER+  +A  YYRG       +++    S    + W+ +  K   P  +++ LVG+K DL    +  +  +D ++ A++    +   S+ T +N+ + F  +A
Sbjct:   54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVL-GIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLVGSKKDLSTPAQYALMEKDALQVAQEMKAEYWAVSSLTGENVREFFFRVA 213          
BLAST of DY258490 vs. ExPASy Swiss-Prot
Match: RHO1_SCHPO (GTP-binding protein rho1 OS=Schizosaccharomyces pombe GN=rho1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.034e-16
Identity = 61/193 (31.61%), Postives = 94/193 (48.70%), Query Frame = 1
Query:  223 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLH------------EKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEE-----IAKRLPRPSPSS 744
            A  LR KLV++GD   GK+C+++ F +G F      TV  ++++      D   V+  +WDTAGQE Y  L PL Y         + + SPDS +  Q  W+ E+  H    + + LV  KADL              +  V  ++G   A+K G + ++E SAKT + + ++FE      + K  P+  PSS
Sbjct:    2 ATELRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEV--DGRHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEV-LHFCSSLPILLVACKADLRNDPKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFESATRAAMLKHKPKVKPSS 191          
BLAST of DY258490 vs. ExPASy Swiss-Prot
Match: RASK_ORYLA (GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.034e-16
Identity = 61/187 (32.62%), Postives = 92/187 (49.20%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRLPRPSPSS*LWILKSELLCLLM 786
            KLV++G  GVGKS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R        + I +  SF    ++ +++++   S D+ M LVGNK DL   R V  +   + A   G+ FIETSAKT   ++  F     EI K   + S        KS+  C+LM
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PTRTVDTKQAQDLARSFGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKEGKKKKKKSKTKCILM 188          
BLAST of DY258490 vs. ExPASy Swiss-Prot
Match: RAS2_NEUCR (Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.034e-16
Identity = 58/186 (31.18%), Postives = 88/186 (47.31%), Query Frame = 1
Query:  226 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK--------------------HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            K +  KLV+LGD GVGK+ + ++     F  T   T+  S+  Q +   D      E+ DTAGQE Y AL   + R        Y I+S  SF + + +  ++Q+                    + S  + + LVGNK+D   +REV  Q+G   A + G  F E SAKT  N+ + F ++ K+L
Sbjct:    5 KQVLYKLVVLGDGGVGKTALTIQLCLEHFVETYDPTIEDSYRKQVVI--DGQACMLEVLDTAGQEEYTALRDQWIRDGEGFVLVYSISSRSSFARIKKFHHQIQRVKESTSSPSAYPGSSPLAATNPSAPVPIMLVGNKSDRVTEREVSTQEGHALARELGCEFTEASAKTRTNVEKAFYDVVKQL 188          
BLAST of DY258490 vs. ExPASy Swiss-Prot
Match: RAS1_HYDMA (Ras-like protein RAS1 OS=Hydra magnipapillata GN=RAS1 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.034e-16
Identity = 53/171 (30.99%), Postives = 90/171 (52.63%), Query Frame = 1
Query:  214 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            SS ++  + K+V++G  GVGKS + ++ ++  F      T+  S++ Q +   D      +I DTAGQE Y+A+   Y R        + +TS  SF +   +  + L+   +  + M LVGNK DL  KR+V  +DG + A   G+ ++ETSAKT   + + F  + + +
Sbjct:    2 SSSSEPTKFKMVVVGAGGVGKSALTIQLIQNHFVEDYDPTIEDSYIKQVVV--DGAICILDILDTAGQEEYSAMREHYMRTGEGFLCIFAVTSLKSFQEIDNFRTQALRVKDADKVPMVLVGNKVDL-PKRDVSTKDGNDKALSFGIPYVETSAKTKQGVEEAFFTLVREI 169          
BLAST of DY258490 vs. ExPASy Swiss-Prot
Match: RAP2C_MOUSE (Ras-related protein Rap-2c OS=Mus musculus GN=Rap2c PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.034e-16
Identity = 59/171 (34.50%), Postives = 92/171 (53.80%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQF----DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYW------VKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            K+V+LG  GVGKS + ++FV G F    DPT +      F  + I +  S +V  EI DTAG E++A++  LY +        Y + +  SF   +        VK  +K     + + LVGNK DL  +REV + +G   A++ G  F+ETSAK+   +++LF EI +++
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-----DFYRKEIEVDSSPSV-LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEK-----VPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELFAEIVRQM 164          
BLAST of DY258490 vs. ExPASy Swiss-Prot
Match: RAP2C_HUMAN (Ras-related protein Rap-2c OS=Homo sapiens GN=RAP2C PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.034e-16
Identity = 59/171 (34.50%), Postives = 92/171 (53.80%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQF----DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYW------VKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            K+V+LG  GVGKS + ++FV G F    DPT +      F  + I +  S +V  EI DTAG E++A++  LY +        Y + +  SF   +        VK  +K     + + LVGNK DL  +REV + +G   A++ G  F+ETSAK+   +++LF EI +++
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-----DFYRKEIEVDSSPSV-LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEK-----VPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELFAEIVRQM 164          
BLAST of DY258490 vs. ExPASy Swiss-Prot
Match: RAP2C_BOVIN (Ras-related protein Rap-2c OS=Bos taurus GN=RAP2C PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.034e-16
Identity = 59/171 (34.50%), Postives = 92/171 (53.80%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQF----DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYW------VKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            K+V+LG  GVGKS + ++FV G F    DPT +      F  + I +  S +V  EI DTAG E++A++  LY +        Y + +  SF   +        VK  +K     + + LVGNK DL  +REV + +G   A++ G  F+ETSAK+   +++LF EI +++
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-----DFYRKEIEVDSSPSV-LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEK-----VPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELFAEIVRQM 164          
BLAST of DY258490 vs. ExPASy Swiss-Prot
Match: RABL_DICDI (Ras-related protein RabL OS=Dictyostelium discoideum GN=rabL PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.034e-16
Identity = 50/168 (29.76%), Postives = 88/168 (52.38%), Query Frame = 1
Query:  238 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN--------GMFFIETSAKTADNINQLFEEIAK 717
            +K++ LGDS VGK+ +   +V G++      ++G  +  + + +++   V   +WDT GQER+ A +P Y+RG       +DI + +SF     W+ E+ K+   +I   LVG K+D+    +  ++  IE   KN         + + ETSAK + N+ +L+   AK
Sbjct:    8 LKIITLGDSNVGKTSLFYHYVNGEYRYNRPPSIGPDYFIKELKVENKH-VFLMVWDTCGQERFQAFSPPYFRGANCYTLCFDIHNEESFINLGKWMDEIIKYCYGNIPFVLVGTKSDIPRTDKSISKARIEQWCKNIEDQGIIDKVHYFETSAKLSQNVTELYNVAAK 174          
BLAST of DY258490 vs. ExPASy Swiss-Prot
Match: RABH_DICDI (Ras-related protein RabH OS=Dictyostelium discoideum GN=rabH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.034e-16
Identity = 46/158 (29.11%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  229 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 702
            N+++KL ++GD  VGKS ++ RF    F   +K+++G  F  +T+ ++  + +  +I DT+G E++ +L   +Y         YDI+  ++F   + W+ E  K    D +  +V +K DL E + V +     YA+   + F ETS+K + N+ + F
Sbjct:    5 NIKLKLTIIGDWNVGKSSLLYRFFNDVFYEQTKLSMGEHFFYKTVLIRGES-IDLQITDTSGMEKFRSLNNSFYSNLDGILIVYDISDQETFENTKLWLNEANKLAPKDCIKIIVASKFDL-ENKVVDSNIVKSYADNLNLKFFETSSKNSINVEETF 160          
The following BLAST results are available for this feature:
BLAST of DY258490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB34_HUMAN7.919e-1727.95Ras-related protein Rab-34 OS=Homo sapiens GN=RAB3... [more]
RHO1_SCHPO1.034e-1631.61GTP-binding protein rho1 OS=Schizosaccharomyces po... [more]
RASK_ORYLA1.034e-1632.62GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1[more]
RAS2_NEUCR1.034e-1631.18Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 S... [more]
RAS1_HYDMA1.034e-1630.99Ras-like protein RAS1 OS=Hydra magnipapillata GN=R... [more]
RAP2C_MOUSE1.034e-1634.50Ras-related protein Rap-2c OS=Mus musculus GN=Rap2... [more]
RAP2C_HUMAN1.034e-1634.50Ras-related protein Rap-2c OS=Homo sapiens GN=RAP2... [more]
RAP2C_BOVIN1.034e-1634.50Ras-related protein Rap-2c OS=Bos taurus GN=RAP2C ... [more]
RABL_DICDI1.034e-1629.76Ras-related protein RabL OS=Dictyostelium discoide... [more]
RABH_DICDI1.034e-1629.11Ras-related protein RabH OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AB01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258490 ID=DY258490; Name=DY258490; organism=Citrus clementina; type=EST; length=980bp
CATCCGAAGCACTGCAGCAAATCAGCAATCAATCTGCTCATCGCAAAATC
ACTCCACTACTAATACCCTAATTACACATATACGTGCATACGCATACTTA
TATACATACTCGTTTATATATTTATTCTTACAGGTCGAATGGGTTGCTCA
GGTTCTGTTCCAGCTAGGAGTTCTGGCCAGTCCGGTGGACTTAACAACTT
GGAAAATGCAGGGTCATCTGATGCAAAAAACCTACGTGTTAAGCTGGTTC
TGTTAGGTGATTCAGGTGTTGGGAAAAGTTGTATTGTTCTTCGCTTTGTT
CGTGGCCAGTTTGACCCTACCTCCAAGGTAACTGTTGGAGCCTCATTCTT
GTCACAGACGATAGCTTTGCAAGATTCTACAACAGTTAAGTTTGAAATAT
GGGATACAGCTGGTCAAGAAAGATATGCTGCTCTGGCACCACTATATTAC
AGAGGTGCTGCAGTCGCAGTTGTTGTGTATGATATAACTAGTCCAGATTC
ATTCAACAAAGCGCAATACTGGGTTAAGGAGCTACAAAAACATGGAAGTC
CTGACATAGTCATGGCTTTAGTTGGTAACAAGGCTGATCTTCATGAGAAG
CGAGAAGTACCAGCTCAAGATGGCATTGAGTATGCGGAGAAGAATGGGAT
GTTCTTTATCGAAACATCGGCCAAGACTGCAGATAATATAAATCAGCTGT
TTGAGGAAATTGCTAAGCGACTTCCCCGCCCATCACCTTCTTCATGATTG
TGGATTCTGAAATCTGAACTGCTGTGTCTGCTGATGTAACGCCGAATCCT
GTCAGTTTGTCATATCAAAGATTTGTGGATATTGTGATATATGAATGTGG
TTCCTGTTTCATTTTGCAACTGGATTATGATTTAAGAATCTCACTTGGAA
AACTTCTGTTGCAACCTTAAATCTTAAGGGGGAAATAAACTTTTAAACGC
CCCAAGGAGGCAACCAAAGAATTGAAATTT
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