DY258498

Overview
NameDY258498
Unique NameDY258498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258498_ssr734 microsatellite DY258498_ssr734:734..755. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1144 contig Ccv1_Contig1144:1..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL32_ORYSJ (Putative germin-like protein 3-2 OS=Oryza sativa subsp. japonica GN=Os03g0651800 PE=3 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.718e-68
Identity = 128/217 (58.99%), Postives = 165/217 (76.04%), Query Frame = 1
Query:    1 LFSTYLLIFSIIAGV-LAVDPDTLQDVCVADTSS---GVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLAPK 639
            + +T+ ++F  +A   LA DPD LQDVCVAD  S    +++NG  CK   N+TA+DFFF GL   G   N+VGSLVTAA+VE++PGLNT+GVS++RIDY   GL+PPHTHPRATE++FV EG LDVGF++TA+KL ++TV KGE++VFP+ LVHFQ+N+G+  A  I+AFNSQLPGTQSIA TLF A PP+P + L +AFQV    +E IKSK  PK
Sbjct:    5 ILATFAVVFLALAATSLAGDPDMLQDVCVADYKSLRGPLRLNGIPCKRLENVTANDFFFDGLTNAGNTTNAVGSLVTAASVERLPGLNTMGVSMARIDYAPWGLSPPHTHPRATEIMFVAEGTLDVGFVTTANKLFTRTVSKGEVFVFPRGLVHFQRNSGNTSALAIAAFNSQLPGTQSIADTLFGAAPPLPSDTLARAFQVDGGMVESIKSKFPPK 221          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL23_ARATH (Germin-like protein subfamily 2 member 3 OS=Arabidopsis thaliana GN=GLP8 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.718e-68
Identity = 127/215 (59.07%), Postives = 162/215 (75.35%), Query Frame = 1
Query:    1 LFSTYLLIFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVV-NNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLAPKK 642
            +F T++L+ + +A     D + LQD CVAD S+G+KVNG+ CKD A +T +DF+F GLA      N+S+GS VT ANVEK+PGLNTLGVS+SRIDY  GGLNPPH HPRA+E IFVLEG L VGF++T  KLISK V KG+++VFPKAL+HFQ+N    PASV++AF+SQLPGTQ +  +LF + PP+PD++L KAF     EI+KIK K  PKK
Sbjct:    8 IFVTFMLVAAHMA---LADTNMLQDFCVADLSNGLKVNGYPCKDPAKVTPEDFYFIGLATAAATANSSMGSAVTGANVEKVPGLNTLGVSISRIDYAPGGLNPPHLHPRASEAIFVLEGRLFVGFLTTTGKLISKHVNKGDVFVFPKALLHFQQNPNKAPASVLAAFDSQLPGTQVVGPSLFGSNPPIPDDLLAKAFGAAAPEIQKIKGKFPPKK 219          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL14_ORYSJ (Germin-like protein 1-4 OS=Oryza sativa subsp. japonica GN=Os01g0952100 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.495e-58
Identity = 121/225 (53.78%), Postives = 161/225 (71.56%), Query Frame = 1
Query:    1 LFSTYLLIFSIIAGVLAVDPDTLQDVCVADTSS---GVKVNGFACKDSANITADDFFFAGLAKPGVV--NNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEA-GGLNPPHTHPRATEMIFVLEGELDVGFI-----STADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLF-TATPPVPDNVLTKAFQVGTKEIEKIKSKLAPK 639
            L S   +I S+ A +LA DPD LQD+CVAD  S    ++VNGF CK  AN+TA+DFFF GL KP  V   N +GS VTAA VE+IPGLNTLGVS++R+DY   GG NPPH+HPRATE++FV +G L+VGF+       + +LI++ V KG ++VFP+ L+H++++ G+KPA  ISAF+SQLPGTQ+ A  LF +++P VP +VL +AFQV    +E IKSK   K
Sbjct:   11 LASFAAVILSLAAPLLAGDPDMLQDICVADYKSLQGPLRVNGFPCKPEANVTAEDFFFPGLGKPADVYSGNPMGSAVTAATVERIPGLNTLGVSMARVDYAPWGGANPPHSHPRATEILFVADGLLEVGFVVATAAPASSRLITRVVPKGGVFVFPRGLLHYERSVGEKPAVAISAFDSQLPGTQAAADALFGSSSPAVPTDVLARAFQVDGGVVENIKSKFQHK 235          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL23_ORYSJ (Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica GN=Os02g0491800 PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.021e-55
Identity = 106/198 (53.54%), Postives = 142/198 (71.72%), Query Frame = 1
Query:   40 GVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST--ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            GV+A DP  LQD+CVAD +S V+VNG ACKD  ++ A+DFFF+GL   G   N  GS VTA NV ++PGLNTLG+SL+RIDY   GLNPPHTHPRATE++ VLEG L VGF+++   +KL +K + KG+++VFPK LVHFQ N G   A  I A +SQ PG  ++A  +F + P + D++L KAFQV    +++I++K
Sbjct:   25 GVVASDPSHLQDLCVADKASTVRVNGVACKDGEDVAAEDFFFSGLHMAGNTTNKQGSAVTAVNVAQVPGLNTLGISLARIDYALHGLNPPHTHPRATEILTVLEGSLYVGFVTSNPENKLFTKVINKGDVFVFPKGLVHFQFNYGTTDAVAIVALSSQNPGVITVANAVFGSKPSITDDILAKAFQVEKTVVDQIQAK 222          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL83_ORYSJ (Germin-like protein 8-3 OS=Oryza sativa subsp. japonica GN=GER2 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.891e-53
Identity = 111/209 (53.11%), Postives = 145/209 (69.38%), Query Frame = 1
Query:   16 LLIFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAG-LAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFI-STADKLISKTVKKGEIYVFPKALVHFQKN-NGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLA 633
            LL+ +     +A DP  LQD CVAD +S V+VNGF CK+  N+T+DDFF A     P    N VGS VT  NV   PGLNTLG+SL+RIDY   G+NPPH HPRATE++ VLEG L VGF+ S  ++L SK V KG+++VFPKA++HFQ N + +KPA   SA +SQ PG  +IA+ +F +TPP+ D+VL KAFQV  K I+ +KS+ +
Sbjct:   12 LLVLASWQQAIAFDPSPLQDFCVADMASPVRVNGFPCKNPMNVTSDDFFNAAKFDMPRNTMNKVGSNVTNLNVINFPGLNTLGISLARIDYAPMGVNPPHVHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDVFVFPKAMIHFQMNLDHNKPAVAQSALSSQNPGVITIASAIFGSTPPISDDVLVKAFQVEKKVIDWLKSQFS 220          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL21_ORYSJ (Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.601e-52
Identity = 104/213 (48.83%), Postives = 145/213 (68.08%), Query Frame = 1
Query:    7 STYLLIFSIIA----GVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST--ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            ST+  + +++A       A DP  LQD CVAD  S V VNGFACKD A IT +DFFF+GL   G  +N  GS VT  NV +I GLNTLG+SL+R+DY   GLNPPH HPRATE++ +LEG L VGF+++   +KL +K + KG+++VFP+ L+HFQ N G K    ++A +SQ PG  +IA  +F + P + D++L KAFQV  K +++I+++
Sbjct:    3 STWFFLLALLAVSISNAFASDPSQLQDFCVADKMSQVLVNGFACKDPAAITVEDFFFSGLHMAGNTSNRQGSAVTGVNVAQISGLNTLGISLARVDYAPYGLNPPHIHPRATEILTILEGSLYVGFVTSNPENKLFTKVLNKGDVFVFPQGLIHFQFNYGTKDVIALAALSSQNPGVITIANAVFGSKPFISDDILAKAFQVEKKIVDRIQAQ 215          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL812_ORYSJ (Germin-like protein 8-12 OS=Oryza sativa subsp. japonica GN=Os08g0231400 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.091e-52
Identity = 109/207 (52.66%), Postives = 147/207 (71.01%), Query Frame = 1
Query:   16 LLIFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAG-LAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFI-STADKLISKTVKKGEIYVFPKALVHFQKN-NGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            LL+ +    ++A DP  LQD CVAD +S V+VNGFACK+  +++++DFF A     P    N +GS VT  NV + PGLNTLG+SL+RIDY   G+NPPH HPRATE++ VLEG L VGF+ S  +KL SK V KG+++VFPKA++HFQ N + DKPA   SA +SQ PG  +IA+ +F + PP+ D+VLTKAFQV  K I+ ++S+
Sbjct:   12 LLVLASWQAIVAYDPSPLQDFCVADMNSPVRVNGFACKNPMDVSSEDFFNAAKFDMPRNTFNKLGSNVTNLNVMEFPGLNTLGISLARIDYAPMGVNPPHIHPRATELLTVLEGTLYVGFVTSNPNKLFSKVVCKGDVFVFPKAMIHFQMNLDHDKPAVAQSALSSQNPGVITIASAVFGSQPPISDDVLTKAFQVEKKLIDWLQSQ 218          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL22_ORYSJ (Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica GN=Os02g0491700 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.731e-52
Identity = 102/198 (51.52%), Postives = 135/198 (68.18%), Query Frame = 1
Query:   40 GVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFI--STADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            G +A DP  LQD CV D  S V+VNGF CKD+ ++ A DFFF+GL   G   N  GS VT  NV +IPGLNT+GVSL RIDY   GLNPPHTHPRATE+  VLEG L VGF+  +  +KL +K + KG+++VFP+ LVHFQ NNG   A  ++A +SQ PG  ++   +F + P + D++L KAFQV    I++I+++
Sbjct:   25 GAIASDPGLLQDFCVVDKMSQVRVNGFPCKDAKDVVAGDFFFSGLHMAGNTTNKQGSNVTTVNVAQIPGLNTMGVSLVRIDYAPNGLNPPHTHPRATEIPTVLEGSLYVGFVISNPENKLFTKVLNKGDVFVFPQGLVHFQFNNGTNNAVALAALSSQNPGVITVGNAVFGSKPSISDDILAKAFQVDKNIIDRIQAQ 222          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL82_ORYSJ (Germin-like protein 8-2 OS=Oryza sativa subsp. japonica GN=GER3 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.658e-52
Identity = 107/214 (50.00%), Postives = 151/214 (70.56%), Query Frame = 1
Query:   10 TYLLIFSIIA----GVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAG-LAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST--ADKLISKTVKKGEIYVFPKALVHFQKN-NGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            ++LL+ +++       +A DP  LQD CVAD +S V+VNGF CK+  N +ADDFF A  L KP   NN VGS VT  NV ++PGLNTLG+S++R+D+   GLNPPHTHPRATE+  VLEG L VGF+++   ++L+SK + KG+++VFP+ L+HFQ N N  KPA  I+A +SQ PG  +IA  +F + PP+ D++L KAFQV  K I+ ++++
Sbjct:    7 SFLLVAALLGLASWKAIASDPSPLQDFCVADLNSPVRVNGFVCKNPMNASADDFFKAAMLDKPRDTNNKVGSNVTLVNVLQLPGLNTLGISIARLDFAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNPDNRLLSKVLNKGDVFVFPEGLIHFQFNPNPHKPAVAIAALSSQNPGVITIANAVFGSNPPISDDILMKAFQVDKKIIDLLQAQ 220          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL81_ORYSJ (Putative germin-like protein 8-1 OS=Oryza sativa subsp. japonica GN=Os08g0188900 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.945e-52
Identity = 110/216 (50.93%), Postives = 149/216 (68.98%), Query Frame = 1
Query:    4 FSTYLLIFSIIA----GVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAG-LAKP-GVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST--ADKLISKTVKKGEIYVFPKALVHFQKN-NGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKS 624
            F ++LL+ ++I       +A +P  LQD CVAD +S V+VNGFACK+  N++ADDFF A  L KP     N VGS +T  NV +IPGLNTLG+S+ R+DY   GLNPPHTHPRATE+  VLEG L VGF+++   +KL SK + KG+++VFPK L+HFQ N +  KPA   SA +SQ PG  +IA  +F + PP+ D++L KAFQV  K I+ +++
Sbjct:    4 FISFLLLAALIGMASWQAIAAEPSPLQDFCVADLNSAVRVNGFACKNPTNVSADDFFKAAMLDKPRDTAVNKVGSNITLINVMEIPGLNTLGISIVRVDYAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNPDNKLFSKVLNKGDVFVFPKGLIHFQFNLDPHKPAIATSAISSQNPGIITIANAVFRSNPPISDDILAKAFQVDKKIIDLLQA 219          
The following BLAST results are available for this feature:
BLAST of DY258498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL32_ORYSJ2.718e-6858.99Putative germin-like protein 3-2 OS=Oryza sativa s... [more]
GL23_ARATH2.718e-6859.07Germin-like protein subfamily 2 member 3 OS=Arabid... [more]
GL14_ORYSJ1.495e-5853.78Germin-like protein 1-4 OS=Oryza sativa subsp. jap... [more]
GL23_ORYSJ2.021e-5553.54Putative germin-like protein 2-3 OS=Oryza sativa s... [more]
GL83_ORYSJ1.891e-5353.11Germin-like protein 8-3 OS=Oryza sativa subsp. jap... [more]
GL21_ORYSJ1.601e-5248.83Putative germin-like protein 2-1 OS=Oryza sativa s... [more]
GL812_ORYSJ2.091e-5252.66Germin-like protein 8-12 OS=Oryza sativa subsp. ja... [more]
GL22_ORYSJ2.731e-5251.52Putative germin-like protein 2-2 OS=Oryza sativa s... [more]
GL82_ORYSJ4.658e-5250.00Germin-like protein 8-2 OS=Oryza sativa subsp. jap... [more]
GL81_ORYSJ7.945e-5250.93Putative germin-like protein 8-1 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AC03FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258498 ID=DY258498; Name=DY258498; organism=Citrus clementina; type=EST; length=849bp
CTTTTCAGCACATACTTGCTTATTTTCAGCATCATAGCTGGAGTCCTTGC
AGTCGATCCTGACACGCTCCAGGATGTTTGTGTGGCCGACACCTCTTCAG
GAGTCAAGGTGAACGGCTTTGCATGCAAAGATAGCGCAAATATTACAGCA
GATGATTTCTTCTTTGCTGGCCTAGCCAAGCCAGGAGTAGTTAACAATTC
AGTGGGATCGCTTGTAACGGCCGCCAATGTTGAAAAAATTCCAGGCCTCA
ACACACTAGGCGTGTCCCTGTCCCGCATCGACTACGAAGCCGGTGGCCTG
AACCCACCTCACACTCACCCACGTGCCACCGAAATGATCTTTGTGCTCGA
AGGTGAATTGGATGTAGGATTCATCAGCACCGCCGATAAATTGATCTCAA
AAACTGTCAAGAAAGGCGAAATCTATGTGTTCCCCAAAGCTTTGGTTCAT
TTTCAGAAGAATAATGGCGACAAGCCGGCTTCAGTTATTTCTGCTTTCAA
CAGTCAATTGCCTGGAACTCAATCCATTGCTGCCACTTTGTTTACTGCCA
CACCTCCCGTGCCGGACAATGTTTTGACAAAAGCTTTTCAAGTTGGAACC
AAAGAGATTGAGAAAATTAAGTCCAAGCTTGCACCAAAGAAAACCTGAAG
ACGGGTTTGCGATTACAGGAGAAATGATCATCCGCTTCTTTCTTTTCTTT
CGAGTTTTGAAGAAAGATTCCGGTTCGGATTTGATATATATATATATATA
TATATACATATGGAGTCAATGAAATTGAATATGCATTTGTAATGATCTTT
TATGTTATGCTCATACTTCCTAATTCATATGAAAAAATAATTTATTTTG
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