DY258498

Overview
NameDY258498
Unique NameDY258498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258498_ssr734 microsatellite DY258498_ssr734:734..755. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1144 contig Ccv1_Contig1144:1..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL37_ORYSJ (Germin-like protein 3-7 OS=Oryza sativa subsp. japonica GN=GER7 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.832e-48
Identity = 94/206 (45.63%), Postives = 133/206 (64.56%), Query Frame = 1
Query:   22 IFSIIAGVLAVDPDTLQDVCVADTSSGVKVN----GFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            + +++A   A DP+ +QD CVA   +G + +    GF CK ++ + +DDFFFAGLA  G  +N  G+ +   NVE  P LNTLGV+++R+D   GG+NP H+HPRA E++ V+ G + VGF+STA K  SK V +GE +  P+ L+HFQ N G+  A  ++ FNSQLPG    A  LF A P +PD VL K+FQV  + I+ +KSK
Sbjct:   25 VLAVLASTCAADPEPIQDFCVAVPRAGGEASPAYPGFPCKPASAVVSDDFFFAGLAAAGSTDNPFGASLKPGNVEAFPALNTLGVAINRVDLAPGGVNPLHSHPRAAELVHVITGRMLVGFVSTAGKYYSKVVGEGETFAIPRGLMHFQYNPGNASARAMTVFNSQLPGVVPAATALFGADPEIPDAVLAKSFQVDAEIIKLLKSK 230          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL811_ORYSJ (Germin-like protein 8-11 OS=Oryza sativa subsp. japonica GN=Os08g0190100 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.124e-48
Identity = 105/214 (49.07%), Postives = 143/214 (66.82%), Query Frame = 1
Query:    7 STYLLIFSIIAGV----LAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST--ADKLISKTVKKGEIYVFPKALVHFQKN-NGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            S++LL+ +++A      +A DP  LQD CVAD  S V VNGFAC +  ++ AD FF A +       N VGS VT  NV +IPGLNTLG+S++RIDY   G NPPHTHPRATE++ VLEG L VGF+++   +K  SK + KG+++VFP  L+HFQ N N  KPA  I+A +SQ PG  +IA  +F + PP+ D+VL KAFQV    I+ ++++
Sbjct:    4 SSFLLLATLLAMASWQGMASDPSPLQDFCVADMHSPVLVNGFACLNPKDVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPDNKFFSKVLNKGDVFVFPVGLIHFQFNPNPYKPAVAIAALSSQNPGAITIANAVFGSKPPISDDVLAKAFQVEKGTIDWLQAQ 217          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GLT1_ARATH (Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana GN=GLP1 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 4.081e-48
Identity = 97/212 (45.75%), Postives = 137/212 (64.62%), Query Frame = 1
Query:    1 LFSTYLLIFSI-IAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLA 633
            L  ++LL+F + +   L+ D D LQD CV D  +   +NGF CK +  ++A DFF++GL  P   +N  G  V  ANV   PGLNTLG+S++ ++   GG+NPPH HPRATE+  V+EG + VGF+ST + L SK +  GE +V P+ LVHFQ N G   A +I+AFNSQLPG   + +TLF + P +P+ VLT+AF+     ++ +KSK A
Sbjct:   10 LLRSFLLMFCLFVIPSLSSDSDPLQDFCVGDLKASASINGFPCKSA--VSASDFFYSGLGGPLDTSNPNGVTVAPANVLTFPGLNTLGISMNNVELAPGGVNPPHLHPRATEVGTVIEGSVFVGFLSTNNTLFSKVLNAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQLPGAVVLPSTLFGSKPEIPNAVLTRAFRTDDTTVQNLKSKFA 219          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL86_ORYSJ (Germin-like protein 8-6 OS=Oryza sativa subsp. japonica GN=Os08g0189500 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.081e-48
Identity = 106/214 (49.53%), Postives = 142/214 (66.36%), Query Frame = 1
Query:    7 STYLLIFSIIAGV----LAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST--ADKLISKTVKKGEIYVFPKALVHFQKN-NGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            S+  L+ +++A V    +A DP  LQD CVAD  S V VNGFAC D  ++ AD FF A +       N VGS VT  NV +IPGLNTLG+S++RIDY   G NPPHTHPRATE++ VLEG L VGF+++   + L SK +KKG+++VFP  L+HFQ N N  +PA  I+A +SQ PG  +IA  +F + PP+ D VL KAFQV    I+ ++++
Sbjct:    5 SSLCLLTALLALVSWQTIASDPSPLQDFCVADEHSPVLVNGFACLDPKHVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLKKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAFQVEKGTIDWLQAQ 218          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL88_ORYSJ (Germin-like protein 8-8 OS=Oryza sativa subsp. japonica GN=Os08g0189700 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.329e-48
Identity = 105/213 (49.30%), Postives = 142/213 (66.67%), Query Frame = 1
Query:   10 TYLLIFSIIAGV----LAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST--ADKLISKTVKKGEIYVFPKALVHFQKN-NGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            ++ L+ +++A V    +A DP  LQD CVAD  S V VNGFAC D   +TAD FF A +       N VGS VT  NV +IPGLNTLG+S++RIDY   G NPPHTHPRATE++ VLEG L VGF+++   + L SK + KG+++VFP+ L+HFQ N N  +PA  I+A +SQ PG  +IA  +F + PP+ D VL KAFQV    I+ ++++
Sbjct:    5 SFCLLAALLALVSWQAIASDPSPLQDFCVADKHSPVLVNGFACLDPKYVTADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDKVLAKAFQVEKGTIDWLQAQ 217          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL18_ARATH (Germin-like protein subfamily 1 member 8 OS=Arabidopsis thaliana GN=GLP9 PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 9.091e-48
Identity = 99/200 (49.50%), Postives = 132/200 (66.00%), Query Frame = 1
Query:   43 VLAVDPDTLQDVCVA--DTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST---ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            V+A DP  LQD CV     + GV VNG  CKD   + ADDFFF+ L +PG  NN+VGS VT  NV  + GLNTLG+SL RIDY   G NPPHTHPRATE++ V +G L VGFIS+    ++L +KT+  G+++VFP+ L+HFQ N G  PA  I+A +SQ  G  +IA T+F + P V  NVL +AFQ+    +  ++++
Sbjct:   22 VIASDPSPLQDFCVGVNTPADGVFVNGKFCKDPRIVFADDFFFSSLNRPGNTNNAVGSNVTTVNVNNLGGLNTLGISLVRIDYAPNGQNPPHTHPRATEILVVQQGTLLVGFISSNQDGNRLFAKTLNVGDVFVFPEGLIHFQFNLGGTPAVAIAALSSQNAGVITIANTIFGSKPDVDPNVLARAFQMDVNAVRNLQAR 221          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL118_ARATH (Germin-like protein subfamily 1 member 18 OS=Arabidopsis thaliana GN=GLP2A PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 2.025e-47
Identity = 101/215 (46.98%), Postives = 140/215 (65.12%), Query Frame = 1
Query:    7 STYLLIFSIIAGVL----AVDPDTLQDVCVA-DTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST---ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            S  L+ F+IIA VL    A DP  LQD CVA D   GV VNG  CKD   + A DFFF+GL  PG  NN VGS VT  NV++IPGLNT+G+SL RIDY   G NPPHTHPR +E++ ++EG L VGF+S+    ++L +K +  G+++VFP  ++HFQ N G  PA   +  +SQ  G  +IA T+F + PP+   +L +AFQ+    ++++++K
Sbjct:    4 SQSLVPFAIIALVLSFVNAYDPSPLQDFCVAIDDLKGVFVNGRFCKDPKRVDAKDFFFSGLNMPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDASVVKELQAK 218          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL116_ARATH (Germin-like protein subfamily 1 member 16 OS=Arabidopsis thaliana GN=At5g39130 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.025e-47
Identity = 101/215 (46.98%), Postives = 140/215 (65.12%), Query Frame = 1
Query:    7 STYLLIFSIIAGVL----AVDPDTLQDVCVA-DTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST---ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            S  L+ F+IIA VL    A DP  LQD CVA D   GV VNG  CKD   + A DFFF+GL  PG  NN VGS VT  NV++IPGLNT+G+SL RIDY   G NPPHTHPR +E++ ++EG L VGF+S+    ++L +K +  G+++VFP  ++HFQ N G  PA   +  +SQ  G  +IA T+F + PP+   +L +AFQ+    ++++++K
Sbjct:    4 SQSLIPFAIIALVLSFVNAYDPSPLQDFCVAIDDLKGVFVNGRFCKDPERVDAKDFFFSGLNVPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQLNIGKIPAIAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDANVVKELQAK 218          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL111_ARATH (Germin-like protein subfamily 1 member 11 OS=Arabidopsis thaliana GN=At5g38940 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.025e-47
Identity = 100/214 (46.73%), Postives = 140/214 (65.42%), Query Frame = 1
Query:   10 TYLLIFSIIAGVL----AVDPDTLQDVCVADTSS--GVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST--ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            ++L + S++A  L    A DP  LQD CV+  +S  GV VNG  CKD   +TADDFFF+GL     + + VGS VTA NV  + GLNTLG+SL RIDY   G NPPHTHPRATE++ V +G L VGF+++   ++L SK + +G+++VFP+ L+HFQ N G  PA   +A +SQ PG  +IA T+F A P +   +L KAFQ+  + +  +++K
Sbjct:    7 SFLAVLSLLALTLPLAIASDPSQLQDFCVSANTSANGVFVNGKFCKDPKLVTADDFFFSGLQTARPITSPVGSTVTAVNVNNLLGLNTLGISLVRIDYAVNGQNPPHTHPRATEILVVEQGTLLVGFVTSNPDNRLFSKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGVITIANTVFGANPAINPTILAKAFQLNPRVVMDLQTK 220          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL87_ORYSJ (Germin-like protein 8-7 OS=Oryza sativa subsp. japonica GN=GER6 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.645e-47
Identity = 103/214 (48.13%), Postives = 142/214 (66.36%), Query Frame = 1
Query:    7 STYLLIFSIIAGV----LAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST--ADKLISKTVKKGEIYVFPKALVHFQKN-NGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            S++ L+  ++A V    +A DP  LQD CVAD  S V VNGFAC D   + AD FF A +       N VGS VT  NV +IPGLNTLG+S++RIDY   G NPPHTHPRATE++ VLEG L VGF+++   + L SK + KG+++VFP+ L+HFQ N N  +PA  ++A +SQ PG  +IA  +F + PP+ D++L KAFQV    I+ ++++
Sbjct:    5 SSFCLLAVLLALVSWQAIASDPSPLQDFCVADKHSPVLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVALAALSSQNPGAITIANAVFGSKPPISDDILAKAFQVEKGTIDWLQAQ 218          
The following BLAST results are available for this feature:
BLAST of DY258498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL37_ORYSJ1.832e-4845.63Germin-like protein 3-7 OS=Oryza sativa subsp. jap... [more]
GL811_ORYSJ3.124e-4849.07Germin-like protein 8-11 OS=Oryza sativa subsp. ja... [more]
GLT1_ARATH4.081e-4845.75Germin-like protein subfamily T member 1 OS=Arabid... [more]
GL86_ORYSJ4.081e-4849.53Germin-like protein 8-6 OS=Oryza sativa subsp. jap... [more]
GL88_ORYSJ5.329e-4849.30Germin-like protein 8-8 OS=Oryza sativa subsp. jap... [more]
GL18_ARATH9.091e-4849.50Germin-like protein subfamily 1 member 8 OS=Arabid... [more]
GL118_ARATH2.025e-4746.98Germin-like protein subfamily 1 member 18 OS=Arabi... [more]
GL116_ARATH2.025e-4746.98Germin-like protein subfamily 1 member 16 OS=Arabi... [more]
GL111_ARATH2.025e-4746.73Germin-like protein subfamily 1 member 11 OS=Arabi... [more]
GL87_ORYSJ2.645e-4748.13Germin-like protein 8-7 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AC03FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258498 ID=DY258498; Name=DY258498; organism=Citrus clementina; type=EST; length=849bp
CTTTTCAGCACATACTTGCTTATTTTCAGCATCATAGCTGGAGTCCTTGC
AGTCGATCCTGACACGCTCCAGGATGTTTGTGTGGCCGACACCTCTTCAG
GAGTCAAGGTGAACGGCTTTGCATGCAAAGATAGCGCAAATATTACAGCA
GATGATTTCTTCTTTGCTGGCCTAGCCAAGCCAGGAGTAGTTAACAATTC
AGTGGGATCGCTTGTAACGGCCGCCAATGTTGAAAAAATTCCAGGCCTCA
ACACACTAGGCGTGTCCCTGTCCCGCATCGACTACGAAGCCGGTGGCCTG
AACCCACCTCACACTCACCCACGTGCCACCGAAATGATCTTTGTGCTCGA
AGGTGAATTGGATGTAGGATTCATCAGCACCGCCGATAAATTGATCTCAA
AAACTGTCAAGAAAGGCGAAATCTATGTGTTCCCCAAAGCTTTGGTTCAT
TTTCAGAAGAATAATGGCGACAAGCCGGCTTCAGTTATTTCTGCTTTCAA
CAGTCAATTGCCTGGAACTCAATCCATTGCTGCCACTTTGTTTACTGCCA
CACCTCCCGTGCCGGACAATGTTTTGACAAAAGCTTTTCAAGTTGGAACC
AAAGAGATTGAGAAAATTAAGTCCAAGCTTGCACCAAAGAAAACCTGAAG
ACGGGTTTGCGATTACAGGAGAAATGATCATCCGCTTCTTTCTTTTCTTT
CGAGTTTTGAAGAAAGATTCCGGTTCGGATTTGATATATATATATATATA
TATATACATATGGAGTCAATGAAATTGAATATGCATTTGTAATGATCTTT
TATGTTATGCTCATACTTCCTAATTCATATGAAAAAATAATTTATTTTG
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