DY258498

Overview
NameDY258498
Unique NameDY258498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258498_ssr734 microsatellite DY258498_ssr734:734..755. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1144 contig Ccv1_Contig1144:1..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL120_ARATH (Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana GN=GLP5A PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.645e-47
Identity = 101/215 (46.98%), Postives = 140/215 (65.12%), Query Frame = 1
Query:    7 STYLLIFSIIAGVL----AVDPDTLQDVCVA-DTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST---ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            S  L+ F+IIA VL    A DP  LQD CVA D   GV VNG  CKD   + A DFFF+GL  PG  NN VGS VT  NV++IPGLNT+G+SL RIDY   G NPPHTHPR +E++ ++EG L VGF+S+    ++L +K +  G+++VFP  ++HFQ N G  PA   +  +SQ  G  +IA T+F + PP+   +L +AFQ+    ++++++K
Sbjct:    4 SQSLVPFAIIALVLSFVNAYDPSPLQDFCVAIDDLKGVFVNGRFCKDPKRVDAKDFFFSGLNVPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDASVVKELQAK 218          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL114_ARATH (Germin-like protein subfamily 1 member 14 OS=Arabidopsis thaliana GN=At5g39110 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.645e-47
Identity = 99/217 (45.62%), Postives = 142/217 (65.44%), Query Frame = 1
Query:    4 FSTYLLIFSIIAGVL----AVDPDTLQDVCVA--DTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST---ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            FS  L++ ++ A V+    A DP  LQD CVA  D  +GV VNG  CKD     A+DFF++GL + G  NN V S VT  NV++IPGLNTLG+SL RIDY   G NPPHTHPRATE++ ++EG L VGF+S+    ++L +K +  G+++VFP  ++HFQ N G  PA   +  +SQ  G  +IA T+F +TPP+  ++L +AFQ+    ++ +++K
Sbjct:    3 FSKSLILITLSALVISFAEANDPSPLQDFCVAIGDLKNGVFVNGKFCKDPKQAKAEDFFYSGLNQAGTTNNKVKSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLEAK 219          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL85_ORYSJ (Germin-like protein 8-5 OS=Oryza sativa subsp. japonica GN=Os08g0189400 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.512e-47
Identity = 100/197 (50.76%), Postives = 132/197 (67.01%), Query Frame = 1
Query:   46 LAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST--ADKLISKTVKKGEIYVFPKALVHFQKN-NGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            +A DP  LQD CVAD  S V+VNGFAC +   + AD FF A         N VGS VT  NV +IPGLNTLG+S++RIDY   G NPPHTHPRATE++ VLEG L VGF+++   + L SK + KG+++VFP+ L+HFQ N N  +PA  I+A +SQ PG  +IA  +F + PP+ D VL KAFQV    I+ ++++
Sbjct:   21 MASDPSPLQDFCVADMHSPVRVNGFACLNPMEVNADHFFKAAKLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPQGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAFQVEKGTIDWLQAQ 217          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL110_ARATH (Germin-like protein subfamily 1 member 10 OS=Arabidopsis thaliana GN=At5g38930 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.512e-47
Identity = 102/214 (47.66%), Postives = 138/214 (64.49%), Query Frame = 1
Query:   10 TYLLIFSIIAGVL----AVDPDTLQDVCVADTSS--GVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST--ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            ++L   S++A  L    A DP  LQD CV+  SS  GV VNG  CKD   +TADDFFF GL     + + VGS VTA NV  + GLNTLG+SL RIDY   G NPPHTHPRATE++ V  G L VGF+++   ++L +K + +G+++VFP+ L+HFQ N G  PA   +A +SQ PG  +IA T+F A P +  N+L KAFQV  + +  +++K
Sbjct:    7 SFLAALSLLALTLPLTIASDPSQLQDFCVSANSSANGVFVNGKFCKDPKLVTADDFFFPGLQTARPITSPVGSTVTAVNVNNLLGLNTLGISLVRIDYAVDGQNPPHTHPRATEILVVELGTLLVGFVTSNPDNRLFTKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGVITIAPTVFGANPAINPNILAKAFQVDPRVVMDLQTK 220          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL810_ORYSJ (Germin-like protein 8-10 OS=Oryza sativa subsp. japonica GN=GLP2 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.892e-47
Identity = 101/197 (51.27%), Postives = 132/197 (67.01%), Query Frame = 1
Query:   46 LAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST--ADKLISKTVKKGEIYVFPKALVHFQKN-NGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            +A DP  LQD CVAD  S V VNGFAC D   + AD FF A +       N VGS VT  NV +IPGLNTLG+S++RIDY   G NPPHTHPRATE++ VLEG L VGF+++   + L SK + KG+++VFP+ L+HFQ N N  +PA  I+A +SQ PG  +IA  +F + PP+ D VL KAFQV    I+ ++++
Sbjct:   21 IASDPSPLQDFCVADMHSPVLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDIVLAKAFQVEKGTIDWLQAQ 217          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL115_ARATH (Germin-like protein subfamily 1 member 15 OS=Arabidopsis thaliana GN=At5g39120 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.005e-46
Identity = 94/209 (44.98%), Postives = 137/209 (65.55%), Query Frame = 1
Query:   16 LLIFSIIAGVLAVDPDTLQDVCVA--DTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST---ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            +  ++++    A DP  LQD CVA  D  +GV VNG  CKD     A+DFF +GL + G+ NN V S VT  NV++IPGLNTLG+SL RIDY   G NPPHTHPRATE++ ++EG L VGF+S+    ++L +K +  G+++VFP  ++HFQ N G  PA   +  +SQ  G  +IA T+F +TPP+  ++L +AFQ+    ++ +++K
Sbjct:   10 ITFWALVTIAKAYDPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVKSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLEAK 218          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL117_ARATH (Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana GN=At5g39150 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.313e-46
Identity = 94/209 (44.98%), Postives = 137/209 (65.55%), Query Frame = 1
Query:   16 LLIFSIIAGVLAVDPDTLQDVCVA--DTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST---ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            + + +++    A DP  LQD CVA  D  +GV VNG  CKD     A+DFF +GL + G+ NN V S VT  NV++IPGLNTLG+SL RIDY   G NPPHTHPRATE++ ++EG L VGF+S+    ++L +K +  G+++VFP  ++HFQ N G  PA   +  +SQ  G  +IA T+F +TPP+  ++L +AFQ+    ++ +++K
Sbjct:   10 ITLSALVTIAKAYDPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVQSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLEAK 218          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL113_ARATH (Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.313e-46
Identity = 95/204 (46.57%), Postives = 135/204 (66.18%), Query Frame = 1
Query:   31 IIAGVLAVDPDTLQDVCVA--DTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST---ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            +I+   A DP  LQD CVA  D  +GV VNG  CKD     A+DFFF+GL + G  NN V S VT  NV++IPGLNT+G+SL RIDY   G NPPHTHPRATE++ ++EG L VGF+S+    ++L +K +  G+++VFP  ++HFQ N G  PA   +  +SQ  G  +IA T+F +TPP+  ++L +AFQ+    ++ +++K
Sbjct:   16 VISFAEAYDPSPLQDFCVAIDDLKNGVFVNGKFCKDPKQAKAEDFFFSGLNQAGSTNNKVRSNVTTVNVDQIPGLNTMGISLVRIDYAPYGQNPPHTHPRATEILVLIEGTLYVGFVSSNQDNNRLFAKVLYPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNIVKDLEAK 219          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL119_ARATH (Germin-like protein subfamily 1 member 19 OS=Arabidopsis thaliana GN=At5g39180 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.515e-46
Identity = 93/209 (44.50%), Postives = 136/209 (65.07%), Query Frame = 1
Query:   16 LLIFSIIAGVLAVDPDTLQDVCVA--DTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST---ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            + + +++    A DP  LQD CVA  D  +GV VNG  CKD     A+DFF +GL + G+ NN V S VT  NV++IPGLNTLG+SL RIDY   G NPPHTHPRATE++ ++EG L VGF+S+    ++L +K +  G+++VFP  ++HFQ N G  PA   +  +SQ  G  +IA  +F +TPP+  ++L +AFQ+    ++ +++K
Sbjct:   10 ITLSALVTIAKAYDPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVQSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADIVFGSTPPINPDILAQAFQLDVNVVKDLEAK 218          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL19_ARATH (Putative germin-like protein subfamily 1 member 9 OS=Arabidopsis thaliana GN=At5g38910 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.233e-45
Identity = 97/214 (45.33%), Postives = 137/214 (64.02%), Query Frame = 1
Query:   10 TYLLIFSIIAGVLAV----DPDTLQDVCVA--DTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST--ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            ++L + SI+A  L++    DP +LQD CV     + GV VNG  CKD   +T +DFFF GL +    N   GS VTA NV  +PGLNTLG+SL RIDY   G NPPHTHPRA+E+++V  G L VGF+++   ++L SKT+ +G+++VFP+ L+HFQ N G  PA   +  +SQ PG  +IA T+F + P +  + L  AFQV  K +  +++K
Sbjct:    5 SFLAVLSILAITLSLSKASDPSSLQDFCVGVNTPADGVFVNGKFCKDPKLVTVEDFFFTGLHEARPPNPKTGSNVTAVNVNNLPGLNTLGISLVRIDYGVYGQNPPHTHPRASEVLYVAVGTLFVGFVTSNPENRLFSKTLYEGDVFVFPQGLIHFQVNVGKYPAVAFAGLSSQNPGVITIADTVFGSNPQIDPSFLASAFQVDPKIVMDLQTK 218          
The following BLAST results are available for this feature:
BLAST of DY258498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL120_ARATH2.645e-4746.98Germin-like protein subfamily 1 member 20 OS=Arabi... [more]
GL114_ARATH2.645e-4745.62Germin-like protein subfamily 1 member 14 OS=Arabi... [more]
GL85_ORYSJ4.512e-4750.76Germin-like protein 8-5 OS=Oryza sativa subsp. jap... [more]
GL110_ARATH4.512e-4747.66Germin-like protein subfamily 1 member 10 OS=Arabi... [more]
GL810_ORYSJ5.892e-4751.27Germin-like protein 8-10 OS=Oryza sativa subsp. ja... [more]
GL115_ARATH1.005e-4644.98Germin-like protein subfamily 1 member 15 OS=Arabi... [more]
GL117_ARATH1.313e-4644.98Germin-like protein subfamily 1 member 17 OS=Arabi... [more]
GL113_ARATH1.313e-4646.57Germin-like protein subfamily 1 member 13 OS=Arabi... [more]
GL119_ARATH6.515e-4644.50Germin-like protein subfamily 1 member 19 OS=Arabi... [more]
GL19_ARATH3.233e-4545.33Putative germin-like protein subfamily 1 member 9 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2AC03FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258498 ID=DY258498; Name=DY258498; organism=Citrus clementina; type=EST; length=849bp
CTTTTCAGCACATACTTGCTTATTTTCAGCATCATAGCTGGAGTCCTTGC
AGTCGATCCTGACACGCTCCAGGATGTTTGTGTGGCCGACACCTCTTCAG
GAGTCAAGGTGAACGGCTTTGCATGCAAAGATAGCGCAAATATTACAGCA
GATGATTTCTTCTTTGCTGGCCTAGCCAAGCCAGGAGTAGTTAACAATTC
AGTGGGATCGCTTGTAACGGCCGCCAATGTTGAAAAAATTCCAGGCCTCA
ACACACTAGGCGTGTCCCTGTCCCGCATCGACTACGAAGCCGGTGGCCTG
AACCCACCTCACACTCACCCACGTGCCACCGAAATGATCTTTGTGCTCGA
AGGTGAATTGGATGTAGGATTCATCAGCACCGCCGATAAATTGATCTCAA
AAACTGTCAAGAAAGGCGAAATCTATGTGTTCCCCAAAGCTTTGGTTCAT
TTTCAGAAGAATAATGGCGACAAGCCGGCTTCAGTTATTTCTGCTTTCAA
CAGTCAATTGCCTGGAACTCAATCCATTGCTGCCACTTTGTTTACTGCCA
CACCTCCCGTGCCGGACAATGTTTTGACAAAAGCTTTTCAAGTTGGAACC
AAAGAGATTGAGAAAATTAAGTCCAAGCTTGCACCAAAGAAAACCTGAAG
ACGGGTTTGCGATTACAGGAGAAATGATCATCCGCTTCTTTCTTTTCTTT
CGAGTTTTGAAGAAAGATTCCGGTTCGGATTTGATATATATATATATATA
TATATACATATGGAGTCAATGAAATTGAATATGCATTTGTAATGATCTTT
TATGTTATGCTCATACTTCCTAATTCATATGAAAAAATAATTTATTTTG
back to top