DY258498

Overview
NameDY258498
Unique NameDY258498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258498_ssr734 microsatellite DY258498_ssr734:734..755. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1144 contig Ccv1_Contig1144:1..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL34_ARATH (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.920e-31
Identity = 70/175 (40.00%), Postives = 108/175 (61.71%), Query Frame = 1
Query:   16 LLIFSIIAGVLAVDPDTLQDVCVADTSSGVK----VNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSI 528
            +++F  I   ++ D D +QD C   T+ G +    +NG+ CK+   ITA DF    L + G  +N + S VT     + PGLNTLG+S+SR D E  G  P H+HPR++EM+FV++G +  GF+ T +K+    ++KG+++VFPK L+HF  + G +PA+  S +NSQ PG  +I
Sbjct:    6 VIVFCAIFLSVSGDSDNMQDTC--PTAPGEQSIFFINGYPCKNPTKITAQDFKSTKLTEAGDTDNYLQSNVTLLTALEFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFVDTNNKIFQTVLQKGDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGVVNI 178          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.732e-31
Identity = 69/179 (38.55%), Postives = 106/179 (59.22%), Query Frame = 1
Query:   16 LLIFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTAT 552
            L I  +++ + A+  D++QD CVA+        G+ C    ++ A DF F+ L  PG   N + + VT   V + P LN LG+S +R+D    G+ P HTHP A+E++FVL+G +  GFIS+A+ +  +T+K G++ VFP+ L+HFQ N G  PA+ +  F+S  PG Q +   LF  T
Sbjct:    2 LRIIFLLSLLFALSNDSVQDFCVANLKRAETPAGYPCIRPIHVKASDFVFS-LGTPGNTTNIISAAVTPGFVAQFPALNGLGISTARLDLAPKGVIPMHTHPGASEVLFVLDGSITAGFISSANSVYVQTLKPGQVMVFPQGLLHFQINAGKTPAAALVTFSSASPGLQILDFALFANT 179          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.319e-30
Identity = 73/192 (38.02%), Postives = 101/192 (52.60%), Query Frame = 1
Query:   13 YLLIFSIIAGVLAVDPDTLQDVCVADTSSGVKV--NGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTK 582
            YLL+  + A  +  D   LQDVC        K+  NGF CK  + I A DF    L   G ++N V S        + PGLNTLG+S++R D    G   PH+HPRA+EM+FV  G +  GF  T  KL  KT+ +G++++FP+ LVHF  N G   A+  S  NSQ PG   I   +F     V + ++ +
Sbjct:   10 YLLLLGLFAPEIISDSPPLQDVCPMAPQGERKLFMNGFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDTKGKLFQKTLAEGDVFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGVVGITHAMFAPDSEVAEGLMAR 201          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.250e-30
Identity = 82/220 (37.27%), Postives = 119/220 (54.09%), Query Frame = 1
Query:    4 FSTYLLIFSIIAG----VLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGS-----LVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLAP 636
            +S  LL+ ++ A     V+A DPD L D  +         NG    +  NIT D F F G  K  V N S         VT A + + P LN   VS + + +    +NPPHTHPR+ E++ V++G L VGFI T +KL ++ +  G+++VFPK +VHFQ N+G++PA  +SAF S  PG   +  T+F     + D VL K+F+     I K+K+ L P
Sbjct:    6 YSLLLLLLAVWAPALTLVMAGDPDILTDYVIP-------ANG----NPMNITGDFFTFTGFRK--VFNTSSAPEPNSFTVTKATMAEFPALNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSVGFIDTTNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAPGVVPVPVTVFGT--GIDDAVLAKSFKTDVPTILKLKANLTP 210          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.242e-29
Identity = 78/211 (36.97%), Postives = 119/211 (56.40%), Query Frame = 1
Query:    1 LFSTYLLIFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFI-STADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKL 630
            L S  LL FS +A          QD CVAD +      G+ CK  A++ A DF + GLA  G  +N + + VT A V + PG+N LG+S +R+D   GG+ P HTHP A+E++FV +G +  GFI S+++ + ++T+  G+I VFP+ L+H+Q N G   A  + AF+   PG Q     LF     +P  ++ K   +   +++K+KS L
Sbjct:   11 LLSFLLLPFSSMA--------LTQDFCVADLTCSDTPAGYPCK--ASVGAGDFAYHGLAAAGNTSNLIKAAVTPAFVGQFPGVNGLGISAARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSSSNTVYTRTLYAGDIMVFPQGLLHYQYNAGQSAAVALVAFSGPNPGLQITDYALFANN--LPSAIVEKVTFLDDAQVKKLKSVL 209          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GLP1_IPONI (Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.390e-26
Identity = 67/174 (38.51%), Postives = 102/174 (58.62%), Query Frame = 1
Query:    4 FSTYLLIFSIIAGVLAVDPDTLQDVCVADTSSGVKV-NGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQ 522
            F  +LL F +     +V+     D CVA+        +GF CK++A +TA DF ++GLAKPG   N + + VT A V + PG+  LGV+L+R+D   GG+ P HTHP A+E++ V+EG +   FIS+ +K+  K +  G++ VFP+ L+ FQ+  G K A  +     + PG Q
Sbjct:    8 FFLFLLAFPVFTANASVN-----DFCVANGPGARDTPSGFVCKNTAKVTAADFVYSGLAKPGNTTNIINAAVTPAFVGQFPGVIGLGVTLARLDLAPGGVIPMHTHPGASEILNVVEGTILAAFISSGNKVYEKALYPGDVMVFPQGLLDFQEITG-KIAPGLCELRQRNPGLQ 175          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL91_ORYSJ (Germin-like protein 9-1 OS=Oryza sativa subsp. japonica GN=Os09g0568500 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.543e-23
Identity = 74/212 (34.91%), Postives = 110/212 (51.89%), Query Frame = 1
Query:   16 LLIFSIIAGVLAVDPDTLQDVCV-ADTS-SGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTA--DKLISKTVKKGEIYVFPKALVHFQKNNG-DKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLAP 636
            LL+ ++I    A DPD L D  V +DT  SG+        D A  T  +        P  +       VT A   + P L    VS + + + AG +NPPH HPRA+E++ V++G L VG +  A    + ++T++ G+++VFPK +VHFQ NNG D  A   SAF S  PGT S+ A LF +   + D +L K+       ++++K   AP
Sbjct:   14 LLLLAVILSAGAADPDILTDFVVPSDTDPSGI--------DGAFFTYKNLVTGNSGDPAKLT------VTKATHAEFPALLGQSVSYAALVFGAGTVNPPHIHPRASELLVVVQGPLLVGLVDAARNGTVYTQTLQTGDMFVFPKGMVHFQFNNGTDVVARAFSAFGSATPGTISLPAALFGS--GIDDTILDKSMHTDQATVDQLKQDQAP 209          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: SR1A_PHYPO (Spherulin-1A OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.767e-15
Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  190 VNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGF-ISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLF 543
            V    G    A +    P +    V+++    EA G+N PHTHPRATE+ F+  G+ + GF +    K I  T++ G   VFP+  +HF+ N   +PA  ++AFN++ PG Q+ A++ F
Sbjct:   83 VTQGTGGKTVATSRTNFPAVIGHNVAMTVGFIEACGINLPHTHPRATEINFIASGKFEAGFFLENQAKFIGHTLEAGMATVFPQGAIHFEINMNCEPAMFVAAFNNEDPGVQTTASSFF 201          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: SR1B_PHYPO (Spherulin-1B OS=Physarum polycephalum PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.499e-13
Identity = 40/119 (33.61%), Postives = 65/119 (54.62%), Query Frame = 1
Query:  190 VNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVG-FISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLF 543
            V  S G    A +    P +    ++++    EA G+N PHTHPRATE+ F+ +G    G F+      I   +++G   VFP+  +HF+ N   +PA  ++AFN++ PG Q+ A++ F
Sbjct:   70 VTQSAGGKTVATSRTDFPAVIGHNIAMTVGFIEACGINLPHTHPRATEINFIAKGRFQAGFFLENQATFIGHILEEGMATVFPQGAIHFEINLECEPAMFVAAFNNEDPGVQTTASSFF 188          
The following BLAST results are available for this feature:
BLAST of DY258498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL34_ARATH5.920e-3140.00Germin-like protein subfamily 3 member 4 OS=Arabid... [more]
GLP1_BRANA7.732e-3138.55Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
GL111_ORYSJ1.319e-3038.02Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]
GL92_ORYSJ2.250e-3037.27Putative germin-like protein 9-2 OS=Oryza sativa s... [more]
GL814_ORYSJ4.242e-2936.97Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
GLP1_IPONI4.390e-2638.51Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=... [more]
GL91_ORYSJ4.543e-2334.91Germin-like protein 9-1 OS=Oryza sativa subsp. jap... [more]
SR1A_PHYPO7.767e-1535.29Spherulin-1A OS=Physarum polycephalum PE=1 SV=1[more]
SR1B_PHYPO2.499e-1333.61Spherulin-1B OS=Physarum polycephalum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AC03FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258498 ID=DY258498; Name=DY258498; organism=Citrus clementina; type=EST; length=849bp
CTTTTCAGCACATACTTGCTTATTTTCAGCATCATAGCTGGAGTCCTTGC
AGTCGATCCTGACACGCTCCAGGATGTTTGTGTGGCCGACACCTCTTCAG
GAGTCAAGGTGAACGGCTTTGCATGCAAAGATAGCGCAAATATTACAGCA
GATGATTTCTTCTTTGCTGGCCTAGCCAAGCCAGGAGTAGTTAACAATTC
AGTGGGATCGCTTGTAACGGCCGCCAATGTTGAAAAAATTCCAGGCCTCA
ACACACTAGGCGTGTCCCTGTCCCGCATCGACTACGAAGCCGGTGGCCTG
AACCCACCTCACACTCACCCACGTGCCACCGAAATGATCTTTGTGCTCGA
AGGTGAATTGGATGTAGGATTCATCAGCACCGCCGATAAATTGATCTCAA
AAACTGTCAAGAAAGGCGAAATCTATGTGTTCCCCAAAGCTTTGGTTCAT
TTTCAGAAGAATAATGGCGACAAGCCGGCTTCAGTTATTTCTGCTTTCAA
CAGTCAATTGCCTGGAACTCAATCCATTGCTGCCACTTTGTTTACTGCCA
CACCTCCCGTGCCGGACAATGTTTTGACAAAAGCTTTTCAAGTTGGAACC
AAAGAGATTGAGAAAATTAAGTCCAAGCTTGCACCAAAGAAAACCTGAAG
ACGGGTTTGCGATTACAGGAGAAATGATCATCCGCTTCTTTCTTTTCTTT
CGAGTTTTGAAGAAAGATTCCGGTTCGGATTTGATATATATATATATATA
TATATACATATGGAGTCAATGAAATTGAATATGCATTTGTAATGATCTTT
TATGTTATGCTCATACTTCCTAATTCATATGAAAAAATAATTTATTTTG
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