DY258508

Overview
NameDY258508
Unique NameDY258508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 3.502e-26
Identity = 54/148 (36.49%), Postives = 89/148 (60.14%), Query Frame = 1
Query:  175 ETMASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRN 576
            E  ++  + ++L +L K+P    SAG + + D++ W+  I+GPPD+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++S+ S+L DPN D P   + A  ++ DRN
Sbjct:    3 ELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRN 150          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.574e-26
Identity = 59/157 (37.58%), Postives = 89/157 (56.69%), Query Frame = 1
Query:  184 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQK 612
            A KR++ E K L  +PP    AGP+ E+  F W+A IMGP D+ +  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ DR ++   A+   QK
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKVAKQIVQK 161          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.974e-26
Identity = 56/160 (35.00%), Postives = 89/160 (55.62%), Query Frame = 1
Query:  175 ETMASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQK 612
            + MA +R++KE K+L ++ P   +AGP  ED  F W   I GP  +P+ GG++  T+ FP DYP  PP + F  + FHPN+  +G++C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     +   M++ DR +Y    R   +K
Sbjct:    3 KAMALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARK 162          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.974e-26
Identity = 59/157 (37.58%), Postives = 89/157 (56.69%), Query Frame = 1
Query:  184 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQK 612
            A KR++ E K L  +PP    AGP+ E+  F W+A IMGP D+ +  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ DR ++   A+   QK
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 161          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.974e-26
Identity = 59/157 (37.58%), Postives = 89/157 (56.69%), Query Frame = 1
Query:  184 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQK 612
            A KR++ E K L  +PP    AGP+ E+  F W+A IMGP D+ +  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ DR ++   A+   QK
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 161          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.974e-26
Identity = 59/157 (37.58%), Postives = 89/157 (56.69%), Query Frame = 1
Query:  184 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQK 612
            A KR++ E K L  +PP    AGP+ E+  F W+A IMGP D+ +  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ DR ++   A+   QK
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 161          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.974e-26
Identity = 54/148 (36.49%), Postives = 88/148 (59.46%), Query Frame = 1
Query:  175 ETMASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE-------------QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRN 576
            E  ++  + ++L +L K+P    SAG + + D++ W+  I+GPPD+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL E             +W P  T+  +++S+ S+L DPN D P   + A  ++ DRN
Sbjct:    3 ELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRN 150          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UBE2S_XENTR (Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropicalis GN=ube2s PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.738e-25
Identity = 57/145 (39.31%), Postives = 83/145 (57.24%), Query Frame = 1
Query:  190 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 624
            +++ KE+  L  DPP      P  ED+   Q  I GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+++NG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y + AR  T+ +A G
Sbjct:   14 RQVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSTNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTEIHAQG 158          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UB2SB_XENLA (Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus laevis GN=ube2s-B PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.738e-25
Identity = 58/145 (40.00%), Postives = 82/145 (56.55%), Query Frame = 1
Query:  190 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 624
            +R+ KE+  L  DPP      P  ED+   Q  I GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+++NG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y + AR  T  +A G
Sbjct:   14 RRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGMFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTDIHAQG 158          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.872e-25
Identity = 57/143 (39.86%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  190 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 618
            +++ KE+  L  DPP      P  ED+   Q +I GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN++SNG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y + AR  T+ +A
Sbjct:   14 RQVYKEVSTLTPDPPEGIKIIPNEEDITDVQVSIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSSNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTEIHA 156          
The following BLAST results are available for this feature:
BLAST of DY258508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UB2G1_HUMAN3.502e-2636.49Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UB2G2_BOVIN4.574e-2637.58Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UBC7_SCHPO5.974e-2635.00Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UB2G2_PONAB5.974e-2637.58Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE5.974e-2637.58Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN5.974e-2637.58Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UB2G1_MACFA5.974e-2636.49Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]
UBE2S_XENTR1.738e-2539.31Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropi... [more]
UB2SB_XENLA1.738e-2540.00Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus lae... [more]
UBE2S_RANCA3.872e-2539.86Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AE01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258508 ID=DY258508; Name=DY258508; organism=Citrus clementina; type=EST; length=870bp
CGATTCCCCAAAGTTTCTCTTGCATTTAATTTTTCTCCTGCTTCCATTTT
TCCTTCGCCGTTCAATTTTTTTAAGTATCTCAGTTTTTGTTTCTAATTTT
CCCGATCTCCCTGTCTCCCTCACGAATCCACATATTGCAAGGCCAAATCA
GGAGGATCTGCTGCTTCTCAGGTTGAAACTATGGCGTCGAAACGGATCTT
GAAGGAGCTCAAAGATTTGCAGAAGGATCCTCCTACATCATGCAGTGCCG
GTCCTGTTGCTGAAGACATGTTTCATTGGCAGGCGACAATCATGGGTCCT
CCAGATAGTCCGTATGCTGGGGGTGTTTTTCTAGTTACCATCCATTTTCC
CCCAGACTATCCATTCAAGCCTCCCAAGGTAGCATTCAGGACAAAGGTAT
TTCATCCTAACATAAATAGCAATGGGAGCATTTGCCTTGACATCTTGAAG
GAACAATGGAGTCCTGCTCTTACCATTTCCAAGGTGTTGCTATCAATCTG
TTCATTATTGACGGATCCAAATCCCGATGATCCGTTGGTACCAGAAATTG
CTCACATGTACAAGACCGACAGGAACAAGTACGAGACAACTGCAAGGAGC
TGGACCCAGAAGTATGCCATGGGCTAAACCTGGGTTATGGTGTGTGAGGG
GGTTCCTTTTCTTTTTAATTCTGGTTTCGAGTTAATGTATGAATATTCTG
TCTGTTCAATCCTAAAAAGTGGACCATAAGAAAGGTCCACTACATCCCCC
GAATTGGAAAGGAGAAACGGGTTGCTTCTTAATTGTTGTATGGATAATGT
CACTTTGGTCAATCAAATGTGTTCCGGAAATGTCACTTGGTCCAGCAAAA
ATTGGACGTCCATTCTAAAG
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