DY258508

Overview
NameDY258508
Unique NameDY258508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UBC9B_DANRE (SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=ube2ib PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.349e-22
Identity = 55/153 (35.95%), Postives = 85/153 (55.56%), Query Frame = 1
Query:  181 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 618
            +A  R+ +E K  +KD P    A P        ++ +W+  I G   +P+ GG+F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  +R +YE   R+  +K++
Sbjct:    4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFS 156          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.007e-22
Identity = 55/139 (39.57%), Postives = 79/139 (56.83%), Query Frame = 1
Query:  148 SGGSAASQVETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 564
            SGG+A   V     KR+ +EL  L        SA P ++++F W  TI G   + Y    + +++ FP  YP+  P V F T  +HPN+++ G+ICLDILKE+WS    +  +LLSI SLL +PN D PL    A ++K
Sbjct:   23 SGGAARGPV----GKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK 157          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UBC84_DROME (Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophila melanogaster GN=Ubc84D PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 5.234e-22
Identity = 49/147 (33.33%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  184 ASKRILKELKDL-QKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 618
            A++R+ +EL DL +    T  +     E +  W   ++ P  +PY  G F + I+FPP YPF PPK+ F+TK++HPN++  G +CL I+  + W P     +VL ++ +++ +P P+ PL  ++A  +  +  K+  TA  +T+K A
Sbjct:    3 ATRRLTRELSDLVEAKMSTLRNIESSDESLLMWTGLLV-PEKAPYNKGAFRIEINFPPQYPFMPPKILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTRTEQVLQALVAIVHNPEPEHPLRSDLAEEFVREHKKFMKTAEEFTKKNA 148          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.234e-22
Identity = 52/124 (41.94%), Postives = 75/124 (60.48%), Query Frame = 1
Query:  190 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMY 561
            KR+  EL  L        SA P  +++F W+ TI G  D+ + G  + +++ F  DYPFK PKV F T  FHPN++  G+ICLDIL+++WS A  +  +LLSI SLL +PN   PL  + A ++
Sbjct:   39 KRLQSELMGLMMGADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLW 162          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.927e-22
Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = 1
Query:  127 STYCKAKSGGSAASQVETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 564
            S+    K   S  S       KR+ +EL  L        SA P ++++F W  TI G   + Y    + +++ FP  YP+  P V F T  FHPN++S+G+ICLDILK++WS    +  +LLS+ SLL +PN + PL P  A +++
Sbjct:   12 SSVASRKGQESGTSAARGSVGKRLQQELMTLMMSGDKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELWQ 157          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.927e-22
Identity = 54/139 (38.85%), Postives = 79/139 (56.83%), Query Frame = 1
Query:  148 SGGSAASQVETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 564
            SGG+A   V     KR+ +EL  L        SA P ++++F W  TI G   + Y    + +++ FP  YP+  P V F T  +HPN+++ G+ICLDILK++WS    +  +LLSI SLL +PN D PL    A ++K
Sbjct:   23 SGGAARGPV----GKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK 157          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.927e-22
Identity = 54/139 (38.85%), Postives = 79/139 (56.83%), Query Frame = 1
Query:  148 SGGSAASQVETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 564
            SGG+A   V     KR+ +EL  L        SA P ++++F W  TI G   + Y    + +++ FP  YP+  P V F T  +HPN+++ G+ICLDILK++WS    +  +LLSI SLL +PN D PL    A ++K
Sbjct:   23 SGGAARGPV----GKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK 157          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.927e-22
Identity = 50/136 (36.76%), Postives = 79/136 (58.09%), Query Frame = 1
Query:  181 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-----KEQ---WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 564
            M S+ ++ E + L ++P  +        +M  W   + GP D+ Y GG+F   I FPP+YP++PP++ F ++++HPNI S+G +C+ IL     +EQ   WSP   I  +LLS+ SLL +PN D P   + A  Y+
Sbjct:    1 MVSRFLMAEYRHLTENPSENFKVSVNENNMTEWDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISILHGDNAEEQGMTWSPVQKIDTILLSVISLLNEPNTDSPANVDAAKSYR 136          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.927e-22
Identity = 52/141 (36.88%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  184 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 564
            + K +L ELK LQ++P        V E D+++W+  I GPP++ Y GG F   + FP DYP+ PP   F TK++HPNI   G +C+ IL              E+W+P   +  +LLS+ SLL +PN   P   + + MY+
Sbjct:    9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYR 149          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 8.927e-22
Identity = 52/141 (36.88%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  184 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 564
            + K +L ELK LQ++P        V E D+++W+  I GPP++ Y GG F   + FP DYP+ PP   F TK++HPNI   G +C+ IL              E+W+P   +  +LLS+ SLL +PN   P   + + MY+
Sbjct:    9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYR 149          
The following BLAST results are available for this feature:
BLAST of DY258508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC9B_DANRE2.349e-2235.95SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=u... [more]
UBE2C_HUMAN4.007e-2239.57Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBC84_DROME5.234e-2233.33Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophi... [more]
UBC19_ARATH5.234e-2241.94Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UBE2C_XENLA8.927e-2236.30Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBE2C_MACFA8.927e-2238.85Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_BOVIN8.927e-2238.85Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBC_ASFP48.927e-2236.76Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UB2R1_MOUSE8.927e-2236.88Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]
UB2R1_HUMAN8.927e-2236.88Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2AE01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258508 ID=DY258508; Name=DY258508; organism=Citrus clementina; type=EST; length=870bp
CGATTCCCCAAAGTTTCTCTTGCATTTAATTTTTCTCCTGCTTCCATTTT
TCCTTCGCCGTTCAATTTTTTTAAGTATCTCAGTTTTTGTTTCTAATTTT
CCCGATCTCCCTGTCTCCCTCACGAATCCACATATTGCAAGGCCAAATCA
GGAGGATCTGCTGCTTCTCAGGTTGAAACTATGGCGTCGAAACGGATCTT
GAAGGAGCTCAAAGATTTGCAGAAGGATCCTCCTACATCATGCAGTGCCG
GTCCTGTTGCTGAAGACATGTTTCATTGGCAGGCGACAATCATGGGTCCT
CCAGATAGTCCGTATGCTGGGGGTGTTTTTCTAGTTACCATCCATTTTCC
CCCAGACTATCCATTCAAGCCTCCCAAGGTAGCATTCAGGACAAAGGTAT
TTCATCCTAACATAAATAGCAATGGGAGCATTTGCCTTGACATCTTGAAG
GAACAATGGAGTCCTGCTCTTACCATTTCCAAGGTGTTGCTATCAATCTG
TTCATTATTGACGGATCCAAATCCCGATGATCCGTTGGTACCAGAAATTG
CTCACATGTACAAGACCGACAGGAACAAGTACGAGACAACTGCAAGGAGC
TGGACCCAGAAGTATGCCATGGGCTAAACCTGGGTTATGGTGTGTGAGGG
GGTTCCTTTTCTTTTTAATTCTGGTTTCGAGTTAATGTATGAATATTCTG
TCTGTTCAATCCTAAAAAGTGGACCATAAGAAAGGTCCACTACATCCCCC
GAATTGGAAAGGAGAAACGGGTTGCTTCTTAATTGTTGTATGGATAATGT
CACTTTGGTCAATCAAATGTGTTCCGGAAATGTCACTTGGTCCAGCAAAA
ATTGGACGTCCATTCTAAAG
back to top