DY258508

Overview
NameDY258508
Unique NameDY258508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UB2L6_HUMAN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo sapiens GN=UBE2L6 PE=1 SV=4)

HSP 1 Score: 104.375 bits (259), Expect = 8.927e-22
Identity = 54/149 (36.24%), Postives = 84/149 (56.38%), Query Frame = 1
Query:  181 MASKRILKELKDLQKDPPTSC-SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 621
            MAS R++KEL+DLQK PP    +      ++  W A ++ P   PY    F + I FPP+YPFKPP + F TK++HPN++ NG ICL I+  E W P     +VL ++  L+  PN  +PL  ++A +   +   +   A  +T ++ +
Sbjct:    2 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGV 149          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.523e-21
Identity = 54/153 (35.29%), Postives = 84/153 (54.90%), Query Frame = 1
Query:  181 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 618
            +A  R+ +E K  +KD P    A P        ++ + +  I G   +P+ GG+F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   ++  DR +YE   R+  +K++
Sbjct:    4 IALSRLAQERKAWRKDHPLGLVAVPTKNPDGTMNLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQDRTEYEKRVRAQAKKFS 156          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.989e-21
Identity = 51/156 (32.69%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  172 VETMASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 618
            + ++  +R+ +E K  +KD P    A PV +     D+  W+A I G   + +AGGV+ +T+ +P +YP KPPKV F    +HPN+  +G+ICL IL E   W PA+T+ +++L +  LL  PNP+ P        +  ++ +Y+       ++Y+
Sbjct:    1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYS 156          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.392e-21
Identity = 53/157 (33.76%), Postives = 81/157 (51.59%), Query Frame = 1
Query:  181 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--------WSPALTISKVLLSICSLLTDPNPDDPLVPEIAH-----MYKTDRNKYETTARSWTQK 612
            M S+ +L E ++L ++P           ++  W   + GP D+ Y GG+F   I FPP+YP++PPK+ F ++++HPNI  +G +C+ IL           WSPA  I  VLLS+ SL  +PN D P   + A      M+K D   Y    +   +K
Sbjct:    1 MVSRFLLTEYRNLTENPSEHFKVSVNENNLTEWDVILKGPSDTFYEGGLFKAKITFPPNYPYEPPKLTFTSEMWHPNIYPDGRLCISILHTDNVEERGMTWSPAQKIETVLLSVISLFNEPNTDSPANVDAAKSYRKLMHKEDLESYPMEVKKTVKK 157          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UBC9_CAEEL (SUMO-conjugating enzyme UBC9 OS=Caenorhabditis elegans GN=ubc-9 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.392e-21
Identity = 52/153 (33.99%), Postives = 85/153 (55.56%), Query Frame = 1
Query:  181 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 618
            +A+ R+ +E K  +KD P    A PV       ++F+W+  I G  D+ + GG++ + + F  D+P  PPK  F   +FHPN+  +G++CL +L E   W P+++I ++L+ I  LL  PN +DP   E   +Y  +R +YE   +    KYA
Sbjct:    4 IAAGRLAEERKHWRKDHPFGFIAKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKKEAVKYA 156          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UBC22_ARATH (Ubiquitin carrier protein E2 22 OS=Arabidopsis thaliana GN=UBC22 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.392e-21
Identity = 53/143 (37.06%), Postives = 78/143 (54.55%), Query Frame = 1
Query:  190 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 618
            K++ KELK L + PP         ED     A I GP  +PY  G+F + +    D+P  PPK  F TK+FHPN+ SNG IC++ LK+ W+P+L +  VL  +  LL +P P+  L  +   M   + ++Y   AR +T  +A
Sbjct:   13 KQLAKELKSLDESPPDGIKVVVNDEDFSQICADIEGPVGTPYENGLFRMKLALSHDFPHSPPKGYFMTKIFHPNVASNGEICVNTLKKDWNPSLGLRHVLSVVRCLLIEPFPESALNEQAGKMLLENYDEYARHARLYTGIHA 155          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.392e-21
Identity = 55/169 (32.54%), Postives = 94/169 (55.62%), Query Frame = 1
Query:  145 KSGGSAASQVE--TMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG*TWVMVC 645
            K G    SQ +  + A  RI K++ +L   P T  +  P   D+ +++  I+ P +  Y  G F+       +YP +PPKV   T+V+HPNI+ +G++CL+IL+E W+P L I+ ++  +  L  +PNP+DPL  E A + +T+R ++E   +   +   +G T+   C
Sbjct:   12 KDGEQKGSQQKKASAAQLRIQKDINELNL-PNTCATDFPDPNDLLNFKL-IISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVKKAMRGGCVGETYFECC 178          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.431e-21
Identity = 53/138 (38.41%), Postives = 78/138 (56.52%), Query Frame = 1
Query:  151 GGSAASQVETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 564
            GG+A   V     KR+ +EL  L        SA P ++++F W  TI G   + Y    + +++ FP  YP+  P V F T  +HPN+++ G+ICLDILK++WS    +  +LLSI SLL +PN D PL    A ++K
Sbjct:   24 GGAARGPV----GKRLQQELMILMTSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK 157          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.786e-21
Identity = 54/148 (36.49%), Postives = 81/148 (54.73%), Query Frame = 1
Query:  181 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLS-ICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 618
            MAS    +E+ D+ K   +      V +D+  +  T  GP DS Y GGV+ + +  P  YP+K P V F  K++HPN++ S+G++CLD++ + WSP   +  V  S +  LL  PNP DP   E A +   DR  YE   + + +KYA
Sbjct:    1 MASPSKRREM-DMMKLMMSDYKVDTVNDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMRDRAAYELKVKEYCEKYA 147          
BLAST of DY258508 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.557e-21
Identity = 50/148 (33.78%), Postives = 83/148 (56.08%), Query Frame = 1
Query:  154 GSAASQVETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTAR 597
            G A+ + ++    R+ K++ +L      S S     +D+ +++ +I  P D  Y  G F+ T    P YP + PKV  +TKV+HPNI+  G++CL+IL+E W P L I+ V+  +  L T+PN +DPL  + A + + +   +ET  R
Sbjct:   21 GGASVKKQSAGELRLHKDISELNLPSSCSISFPNGKDDLMNFEVSIK-PDDGYYHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDNPKLFETNVR 167          
The following BLAST results are available for this feature:
BLAST of DY258508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UB2L6_HUMAN8.927e-2236.24Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo s... [more]
UBC9_PAGMA1.523e-2135.29SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBC9_YEAST1.989e-2132.69SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere... [more]
UBC_ASFK53.392e-2133.76Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC9_CAEEL3.392e-2133.99SUMO-conjugating enzyme UBC9 OS=Caenorhabditis ele... [more]
UBC22_ARATH3.392e-2137.06Ubiquitin carrier protein E2 22 OS=Arabidopsis tha... [more]
UBC12_DROME3.392e-2132.54NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBE2C_MOUSE4.431e-2138.41Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UBC6_ARATH5.786e-2136.49Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]
RCE1_ARATH7.557e-2133.78NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AE01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258508 ID=DY258508; Name=DY258508; organism=Citrus clementina; type=EST; length=870bp
CGATTCCCCAAAGTTTCTCTTGCATTTAATTTTTCTCCTGCTTCCATTTT
TCCTTCGCCGTTCAATTTTTTTAAGTATCTCAGTTTTTGTTTCTAATTTT
CCCGATCTCCCTGTCTCCCTCACGAATCCACATATTGCAAGGCCAAATCA
GGAGGATCTGCTGCTTCTCAGGTTGAAACTATGGCGTCGAAACGGATCTT
GAAGGAGCTCAAAGATTTGCAGAAGGATCCTCCTACATCATGCAGTGCCG
GTCCTGTTGCTGAAGACATGTTTCATTGGCAGGCGACAATCATGGGTCCT
CCAGATAGTCCGTATGCTGGGGGTGTTTTTCTAGTTACCATCCATTTTCC
CCCAGACTATCCATTCAAGCCTCCCAAGGTAGCATTCAGGACAAAGGTAT
TTCATCCTAACATAAATAGCAATGGGAGCATTTGCCTTGACATCTTGAAG
GAACAATGGAGTCCTGCTCTTACCATTTCCAAGGTGTTGCTATCAATCTG
TTCATTATTGACGGATCCAAATCCCGATGATCCGTTGGTACCAGAAATTG
CTCACATGTACAAGACCGACAGGAACAAGTACGAGACAACTGCAAGGAGC
TGGACCCAGAAGTATGCCATGGGCTAAACCTGGGTTATGGTGTGTGAGGG
GGTTCCTTTTCTTTTTAATTCTGGTTTCGAGTTAATGTATGAATATTCTG
TCTGTTCAATCCTAAAAAGTGGACCATAAGAAAGGTCCACTACATCCCCC
GAATTGGAAAGGAGAAACGGGTTGCTTCTTAATTGTTGTATGGATAATGT
CACTTTGGTCAATCAAATGTGTTCCGGAAATGTCACTTGGTCCAGCAAAA
ATTGGACGTCCATTCTAAAG
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