DY258514

Overview
NameDY258514
Unique NameDY258514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1003
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258514 vs. ExPASy Swiss-Prot
Match: RAB37_MOUSE (Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.641e-49
Identity = 101/229 (44.10%), Postives = 149/229 (65.07%), Query Frame = 1
Query:   73 TPGPISSWTGSIL-REPPQHLIAVMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLD-SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQ--XASCCS 747
            TPG  ++  G    R PP       +P YD   K++L+GDSGVGK+C L++F D ++L  ++I+T+G+D + + V  DG  VKLQIWDTAGQERFR++T +YYR A  ++++YD+T+Q SF+N++ WL EI  YA  +V  +L+GNK D++ ++V+  E  +  A E G+PFMETSA   MNVE AF+A+  ++K R   QP       P+ QI+    +Q   +SCCS
Sbjct:    4 TPGAATAGDGEAPERSPP------FSPNYDLTGKVMLLGDSGVGKTCFLIQFKDGAFLSGTFIATVGIDSRNKVVTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADVSSERVIRSEDGETLAREYGVPFMETSAKTGMNVELAFLAIAKELKYRAGRQP-----DEPSFQIRDYVESQKKRSSCCS 221          
BLAST of DY258514 vs. ExPASy Swiss-Prot
Match: RABG1_DICDI (Ras-related protein RabG1 OS=Dictyostelium discoideum GN=rabG1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.800e-49
Identity = 93/163 (57.06%), Postives = 127/163 (77.91%), Query Frame = 1
Query:  163 LFKLLLIGDSGVGKSCLLLRFAD-DSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADI 648
            +FK+LLIGDS VGK+ LLLRF D +++ ++ ++   VD+K + +  DG+T  LQIWDTAGQERFRTITSS+YRGAHG+++ YDVTDQ ++NNV  W+ EI RY    V+++LVGNKCDL D+K+V+   A+ +AD +GIPF+ETSA   +NVE+AFMAM  +I
Sbjct:    6 VFKILLIGDSAVGKTSLLLRFTDPNNFQETSVNMTSVDYKNKNITIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVGLWMQEIQRYGVLGVSRVLVGNKCDLEDRKLVNASIAQEYADILGIPFIETSATTGVNVEEAFMAMADEI 168          
BLAST of DY258514 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 195.667 bits (496), Expect = 3.656e-49
Identity = 99/229 (43.23%), Postives = 151/229 (65.94%), Query Frame = 1
Query:   73 TPGPISSWTGSIL-REPPQHLIAVMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLD-SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQ--XASCCS 747
            TPG +++  G    R PP       +P YD   K++L+GD+GVGK+C L++F D ++L  ++I+T+G+DF+ + V  DG  VKLQIWDTAGQERFR++T +YYR A  ++++YD+T++ SF+N++ WL EI  YA  +V  +L+GNK D++ ++V+  E  +  A E G+PF+ETSA   MNVE AF+A+  ++K R   Q     A  P+ QI+    +Q   +SCCS
Sbjct:    4 TPGAVATRDGEAPERSPP------CSPSYDLTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAGHQ-----ADEPSFQIRDYVESQKKRSSCCS 221          
BLAST of DY258514 vs. ExPASy Swiss-Prot
Match: RABF1_DICDI (Ras-related protein RabF1 OS=Dictyostelium discoideum GN=rabF1-1 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.775e-49
Identity = 94/173 (54.34%), Postives = 132/173 (76.30%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRM 660
            M+ EY++LFK +L GDSGVGK+ +L R  DD++ +++I TIG++FKI+TV  +GK +KLQIWDTAG++RFR + +S+YRG HG+IIVYDVTDQ SF NV  W+ +I RYA+ENV K+++GNK DL  +KVV    A+ FAD + IPF E SA  S+N+E+AF+++     NR+
Sbjct:    1 MSKEYEHLFKFVLAGDSGVGKTSILFRITDDTFTETHI-TIGIEFKIKTVYIEGKPIKLQIWDTAGEKRFR-VHNSHYRGCHGVIIVYDVTDQRSFENVPSWIEDIRRYANENVIKIIIGNKNDLVSQKVVDPFLAQEFADSLDIPFKEISAKQSINIEEAFISLVKLCINRI 171          
BLAST of DY258514 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 6.237e-49
Identity = 94/201 (46.77%), Postives = 137/201 (68.16%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRM-----ASQPAMNNARPPTVQIKGQPVNQXASC 741
            +DY+FKLLLIG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV +  K +KLQIWDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ +N   +LVGNKCDL D++VV  E  +  AD++G  F E SA +++NV+Q F  +   I  +M      S  + +N + P V     P  Q +SC
Sbjct:   19 FDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSSSSGSNGKGPAV--GDAPAPQPSSC 217          
BLAST of DY258514 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 6.896e-48
Identity = 90/201 (44.78%), Postives = 139/201 (69.15%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMA----SQPAMNNARPPTVQIKGQPVNQXASCC 744
            +DY+FKLL+IG+S VGK+  L R+ADD++  +++ST+G+DFK++TV +  K VKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+ +++VV  E  +  A+++G  F E SA ++++V QAF  +   I ++M+    + P++  A   T      P+ Q    C
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSMDTDPSVLGASKTTRLSDTPPLLQQNCSC 219          
BLAST of DY258514 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 6.896e-48
Identity = 90/201 (44.78%), Postives = 139/201 (69.15%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMA----SQPAMNNARPPTVQIKGQPVNQXASCC 744
            +DY+FKLL+IG+S VGK+  L R+ADD++  +++ST+G+DFK++TV +  K VKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+ +++VV  E  +  A+++G  F E SA ++++V QAF  +   I ++M+    + P++  A   T      P+ Q    C
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSLDTDPSVLGASKTTRLSDTPPLLQQNCSC 219          
BLAST of DY258514 vs. ExPASy Swiss-Prot
Match: RAB26_HUMAN (Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 6.896e-48
Identity = 94/199 (47.24%), Postives = 138/199 (69.35%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNAR-PPTVQIKGQPVNQXASCC 744
            YD  FK++L+GDSGVGK+CLL+RF D ++L  ++IST+G+DF+ + ++ DG  VKLQ+WDTAGQERFR++T +YYR AH ++++YDVT++ SF+N++ WL EI  YA  +V  +L+GNK D   ++VV  E  +  A E G+PFMETSA   +NV+ AF A+  ++K R    P+    R    V+ +G    + ASCC
Sbjct:   60 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKQRSMKAPSEPRFRLHDYVKREG----RGASCC 254          
BLAST of DY258514 vs. ExPASy Swiss-Prot
Match: RAB15_RAT (Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 6.896e-48
Identity = 86/166 (51.81%), Postives = 123/166 (74.10%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMT 639
            M  +YD LF+LLLIGDSGVGK+CLL RF D+ +  S+ISTIGVDFK++T+E DG  V++QIWDTAGQER++TIT  YYR A GI +VYD++ + S+ ++ +W++++D YA E V K+L+GNK D   K+ V  E  +  A E G+ F ETSA  ++N++++F  +T
Sbjct:    1 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLT 166          
BLAST of DY258514 vs. ExPASy Swiss-Prot
Match: RAB15_HUMAN (Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 6.896e-48
Identity = 86/166 (51.81%), Postives = 123/166 (74.10%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMT 639
            M  +YD LF+LLLIGDSGVGK+CLL RF D+ +  S+ISTIGVDFK++T+E DG  V++QIWDTAGQER++TIT  YYR A GI +VYD++ + S+ ++ +W++++D YA E V K+L+GNK D   K+ V  E  +  A E G+ F ETSA  ++N++++F  +T
Sbjct:    1 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLT 166          
The following BLAST results are available for this feature:
BLAST of DY258514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB37_MOUSE1.641e-4944.10Ras-related protein Rab-37 OS=Mus musculus GN=Rab3... [more]
RABG1_DICDI2.800e-4957.06Ras-related protein RabG1 OS=Dictyostelium discoid... [more]
RAB37_HUMAN3.656e-4943.23Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]
RABF1_DICDI4.775e-4954.34Ras-related protein RabF1 OS=Dictyostelium discoid... [more]
RAB3D_HUMAN6.237e-4946.77Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RAB3B_MOUSE6.896e-4844.78Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU6.896e-4844.78Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]
RAB26_HUMAN6.896e-4847.24Ras-related protein Rab-26 OS=Homo sapiens GN=RAB2... [more]
RAB15_RAT6.896e-4851.81Ras-related protein Rab-15 OS=Rattus norvegicus GN... [more]
RAB15_HUMAN6.896e-4851.81Ras-related protein Rab-15 OS=Homo sapiens GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AF10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258514 ID=DY258514; Name=DY258514; organism=Citrus clementina; type=EST; length=1003bp
CATCATCATCGACATTTTGCTTTCTTCGTCAAATTCTCTCTCAATCTCAC
CTCCTTAGCTTGTCTGTGCCAAACTCCCGGTCCAATCTCCAGCTGGACCG
GTTCGATTCTGCGCGAACCCCCTCAACATCTTATTGCAGTCATGAATCCT
GAATATGACTACTTGTTCAAGCTTTTGCTGATTGGAGACTCTGGAGTTGG
CAAATCGTGTCTTCTTCTGAGATTTGCTGATGATTCGTACCTGGACAGTT
ACATTAGCACTATTGGGGTTGACTTTAAAATTCGCACAGTGGAGCAAGAC
GGGAAGACTGTAAAACTCCAAATTTGGGACACTGCAGGGCAAGAACGATT
CAGGACAATCACTAGCAGCTACTACCGTGGAGCACATGGCATTATCATTG
TTTATGATGTTACAGACCAAGAGAGCTTCAACAACGTTAAGCAGTGGTTG
AATGAAATTGATCGCTATGCAAGTGAAAATGTAAACAAGCTTCTGGTTGG
AAACAAGTGTGATCTCACTGATAAGAAGGTTGTCTCTTATGAAACAGCGA
AGGCATTTGCTGATGAAATTGGCATCCCGTTCATGGAGACCAGCGCANAG
GATTCTATGAACGTGGAACAAGCTTTTATGGCTATGACTGCTGACATTAA
GAACAGGATGGCAAGTCAACCTGCAATGAACAATGCAAGGCCACCAACTG
TGCAGATAAAAGGACAACCGGTGAACCAGAANGCCAGCTGCTGCTCAACT
TAATCGTTTGTCTTATCCTTCATTGCGTGCATTTGTTTATGGGTAACTTT
CTCAATCACGTTGTAGGAAACCAGTGAAAAACTATTCCTACCCCATGAAT
CATATGACGGATTTGTTTTACTAGTTTTTTGTAGTTATTTGTGAAATTTC
CAATTCTTTCAGTCCATATTAACTATTAAAAGGGCATGTACAATTGGAAG
GGGTTGCTTTGAAAGTGGCAAAAGGTTATTAAATTTTTTTTTTTTTCTTT
TCC
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