DY258515

Overview
NameDY258515
Unique NameDY258515
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1287
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258515_ssr820 microsatellite DY258515_ssr820:820..834. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY258515 vs. ExPASy Swiss-Prot
Match: AAS_YERPY (Bifunctional protein aas OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=aas PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.092e-11
Identity = 52/194 (26.80%), Postives = 85/194 (43.81%), Query Frame = 3 
Query:   90 DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM-QKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVID 668
            DD   + F+SG+ G PKGVV +H SL+ +V Q     +     T  D  +  LPLFH + L   L   L  G+ V L         + EL+     +             +      YD + +R V++GA  L +  +   + +    IL +GYG+TE  PV+++       P   K  + G ++   E ++I+
Sbjct:  365 DDSALILFTSGSEGNPKGVVHSHASLLANVEQIRTIAD----FTPRDRFMSSLPLFHAFGLTVGLFTPLMTGSRVFLYPSPLHYRVVPELVYDRNCTVLFGTSTFLGNYAR--FAHPYDFARVRYVVAGAEKLAESTKQIWQDKFGIRIL-EGYGVTECAPVVAI-----NVPMAAKVNTVGRILPGMEARLIN 546

HSP 2 Score: 29.6462 bits (65), Expect = 1.092e-11
Identity = 18/52 (34.62%), Postives = 26/52 (50.00%), Query Frame = 2 
Query:  683 LPSHNQPGEICIRGPQIMKGY--------LNDPEATAATIDVE-GWLLTGDL 811
            +P   Q G + +RGP IM+GY        L  P A  A  +++  W  TGD+
Sbjct:  547 VPGIAQGGRLQLRGPNIMRGYLRVENPGVLEQPSAENAQGELDANWYDTGDI 598
[Close]
BLAST of DY258515 vs. ExPASy Swiss-Prot
Match: AAS_YERPS (Bifunctional protein aas OS=Yersinia pseudotuberculosis GN=aas PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.092e-11
Identity = 52/194 (26.80%), Postives = 85/194 (43.81%), Query Frame = 3 
Query:   90 DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM-QKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVID 668
            DD   + F+SG+ G PKGVV +H SL+ +V Q     +     T  D  +  LPLFH + L   L   L  G+ V L         + EL+     +             +      YD + +R V++GA  L +  +   + +    IL +GYG+TE  PV+++       P   K  + G ++   E ++I+
Sbjct:  365 DDSALILFTSGSEGNPKGVVHSHASLLANVEQIRTIAD----FTPRDRFMSSLPLFHAFGLTVGLFTPLMTGSRVFLYPSPLHYRVVPELVYDRNCTVLFGTSTFLGNYAR--FAHPYDFARVRYVVAGAEKLAESTKQIWQDKFGIRIL-EGYGVTECAPVVAI-----NVPMAAKVNTVGRILPGMEARLIN 546

HSP 2 Score: 29.6462 bits (65), Expect = 1.092e-11
Identity = 18/52 (34.62%), Postives = 26/52 (50.00%), Query Frame = 2 
Query:  683 LPSHNQPGEICIRGPQIMKGY--------LNDPEATAATIDVE-GWLLTGDL 811
            +P   Q G + +RGP IM+GY        L  P A  A  +++  W  TGD+
Sbjct:  547 VPGIAQGGRLQLRGPNIMRGYLRVENPGVLEQPSAENAQGELDANWYDTGDI 598
[Close]
BLAST of DY258515 vs. ExPASy Swiss-Prot
Match: AAS_YERPP (Bifunctional protein aas OS=Yersinia pestis (strain Pestoides F) GN=aas PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.092e-11
Identity = 52/194 (26.80%), Postives = 85/194 (43.81%), Query Frame = 3 
Query:   90 DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM-QKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVID 668
            DD   + F+SG+ G PKGVV +H SL+ +V Q     +     T  D  +  LPLFH + L   L   L  G+ V L         + EL+     +             +      YD + +R V++GA  L +  +   + +    IL +GYG+TE  PV+++       P   K  + G ++   E ++I+
Sbjct:  365 DDSALILFTSGSEGNPKGVVHSHASLLANVEQIRTIAD----FTPRDRFMSSLPLFHAFGLTVGLFTPLMTGSRVFLYPSPLHYRVVPELVYDRNCTVLFGTSTFLGNYAR--FAHPYDFARVRYVVAGAEKLAESTKQIWQDKFGIRIL-EGYGVTECAPVVAI-----NVPMAAKVNTVGRILPGMEARLIN 546

HSP 2 Score: 29.6462 bits (65), Expect = 1.092e-11
Identity = 18/52 (34.62%), Postives = 26/52 (50.00%), Query Frame = 2 
Query:  683 LPSHNQPGEICIRGPQIMKGY--------LNDPEATAATIDVE-GWLLTGDL 811
            +P   Q G + +RGP IM+GY        L  P A  A  +++  W  TGD+
Sbjct:  547 VPGIAQGGRLQLRGPNIMRGYLRVENPGVLEQPSAENAQGELDANWYDTGDI 598
[Close]
BLAST of DY258515 vs. ExPASy Swiss-Prot
Match: AAS_YERPG (Bifunctional protein aas OS=Yersinia pestis bv. Antiqua (strain Angola) GN=aas PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.092e-11
Identity = 52/194 (26.80%), Postives = 85/194 (43.81%), Query Frame = 3 
Query:   90 DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM-QKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVID 668
            DD   + F+SG+ G PKGVV +H SL+ +V Q     +     T  D  +  LPLFH + L   L   L  G+ V L         + EL+     +             +      YD + +R V++GA  L +  +   + +    IL +GYG+TE  PV+++       P   K  + G ++   E ++I+
Sbjct:  365 DDSALILFTSGSEGNPKGVVHSHASLLANVEQIRTIAD----FTPRDRFMSSLPLFHAFGLTVGLFTPLMTGSRVFLYPSPLHYRVVPELVYDRNCTVLFGTSTFLGNYAR--FAHPYDFARVRYVVAGAEKLAESTKQIWQDKFGIRIL-EGYGVTECAPVVAI-----NVPMAAKVNTVGRILPGMEARLIN 546

HSP 2 Score: 29.6462 bits (65), Expect = 1.092e-11
Identity = 18/52 (34.62%), Postives = 26/52 (50.00%), Query Frame = 2 
Query:  683 LPSHNQPGEICIRGPQIMKGY--------LNDPEATAATIDVE-GWLLTGDL 811
            +P   Q G + +RGP IM+GY        L  P A  A  +++  W  TGD+
Sbjct:  547 VPGIAQGGRLQLRGPNIMRGYLRVENPGVLEQPSAENAQGELDANWYDTGDI 598
[Close]
BLAST of DY258515 vs. ExPASy Swiss-Prot
Match: AAS_YERPB (Bifunctional protein aas OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=aas PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.092e-11
Identity = 52/194 (26.80%), Postives = 85/194 (43.81%), Query Frame = 3 
Query:   90 DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM-QKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVID 668
            DD   + F+SG+ G PKGVV +H SL+ +V Q     +     T  D  +  LPLFH + L   L   L  G+ V L         + EL+     +             +      YD + +R V++GA  L +  +   + +    IL +GYG+TE  PV+++       P   K  + G ++   E ++I+
Sbjct:  365 DDSALILFTSGSEGNPKGVVHSHASLLANVEQIRTIAD----FTPRDRFMSSLPLFHAFGLTVGLFTPLMTGSRVFLYPSPLHYRVVPELVYDRNCTVLFGTSTFLGNYAR--FAHPYDFARVRYVVAGAEKLAESTKQIWQDKFGIRIL-EGYGVTECAPVVAI-----NVPMAAKVNTVGRILPGMEARLIN 546

HSP 2 Score: 29.6462 bits (65), Expect = 1.092e-11
Identity = 18/52 (34.62%), Postives = 26/52 (50.00%), Query Frame = 2 
Query:  683 LPSHNQPGEICIRGPQIMKGY--------LNDPEATAATIDVE-GWLLTGDL 811
            +P   Q G + +RGP IM+GY        L  P A  A  +++  W  TGD+
Sbjct:  547 VPGIAQGGRLQLRGPNIMRGYLRVENPGVLEQPSAENAQGELDANWYDTGDI 598
[Close]
BLAST of DY258515 vs. ExPASy Swiss-Prot
Match: AAS_YERP3 (Bifunctional protein aas OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=aas PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.092e-11
Identity = 52/194 (26.80%), Postives = 85/194 (43.81%), Query Frame = 3 
Query:   90 DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM-QKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVID 668
            DD   + F+SG+ G PKGVV +H SL+ +V Q     +     T  D  +  LPLFH + L   L   L  G+ V L         + EL+     +             +      YD + +R V++GA  L +  +   + +    IL +GYG+TE  PV+++       P   K  + G ++   E ++I+
Sbjct:  365 DDSALILFTSGSEGNPKGVVHSHASLLANVEQIRTIAD----FTPRDRFMSSLPLFHAFGLTVGLFTPLMTGSRVFLYPSPLHYRVVPELVYDRNCTVLFGTSTFLGNYAR--FAHPYDFARVRYVVAGAEKLAESTKQIWQDKFGIRIL-EGYGVTECAPVVAI-----NVPMAAKVNTVGRILPGMEARLIN 546

HSP 2 Score: 29.6462 bits (65), Expect = 1.092e-11
Identity = 18/52 (34.62%), Postives = 26/52 (50.00%), Query Frame = 2 
Query:  683 LPSHNQPGEICIRGPQIMKGY--------LNDPEATAATIDVE-GWLLTGDL 811
            +P   Q G + +RGP IM+GY        L  P A  A  +++  W  TGD+
Sbjct:  547 VPGIAQGGRLQLRGPNIMRGYLRVENPGVLEQPSAENAQGELDANWYDTGDI 598
[Close]
BLAST of DY258515 vs. ExPASy Swiss-Prot
Match: AAS_YERPE (Bifunctional protein aas OS=Yersinia pestis GN=aas PE=3 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 6.778e-11
Identity = 51/194 (26.29%), Postives = 84/194 (43.30%), Query Frame = 3 
Query:   90 DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM-QKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVID 668
            D    + F+SG+ G PKGVV +H SL+ +V Q     +     T  D  +  LPLFH + L   L   L  G+ V L         + EL+     +             +      YD + +R V++GA  L +  +   + +    IL +GYG+TE  PV+++       P   K  + G ++   E ++I+
Sbjct:  365 DGSALILFTSGSEGNPKGVVHSHASLLANVEQIRTIAD----FTPRDRFMSSLPLFHAFGLTVGLFTPLMTGSRVFLYPSPLHYRVVPELVYDRNCTVLFGTSTFLGNYAR--FAHPYDFARVRYVVAGAEKLAESTKQIWQDKFGIRIL-EGYGVTECAPVVAI-----NVPMAAKVNTVGRILPGMEARLIN 546

HSP 2 Score: 29.6462 bits (65), Expect = 6.778e-11
Identity = 18/52 (34.62%), Postives = 26/52 (50.00%), Query Frame = 2 
Query:  683 LPSHNQPGEICIRGPQIMKGY--------LNDPEATAATIDVE-GWLLTGDL 811
            +P   Q G + +RGP IM+GY        L  P A  A  +++  W  TGD+
Sbjct:  547 VPGIAQGGRLQLRGPNIMRGYLRVENPGVLEQPSAENAQGELDANWYDTGDI 598
[Close]
BLAST of DY258515 vs. ExPASy Swiss-Prot
Match: AAS_YERPA (Bifunctional protein aas OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=aas PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 6.778e-11
Identity = 51/194 (26.29%), Postives = 84/194 (43.30%), Query Frame = 3 
Query:   90 DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM-QKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVID 668
            D    + F+SG+ G PKGVV +H SL+ +V Q     +     T  D  +  LPLFH + L   L   L  G+ V L         + EL+     +             +      YD + +R V++GA  L +  +   + +    IL +GYG+TE  PV+++       P   K  + G ++   E ++I+
Sbjct:  365 DGSALILFTSGSEGNPKGVVHSHASLLANVEQIRTIAD----FTPRDRFMSSLPLFHAFGLTVGLFTPLMTGSRVFLYPSPLHYRVVPELVYDRNCTVLFGTSTFLGNYAR--FAHPYDFARVRYVVAGAEKLAESTKQIWQDKFGIRIL-EGYGVTECAPVVAI-----NVPMAAKVNTVGRILPGMEARLIN 546

HSP 2 Score: 29.6462 bits (65), Expect = 6.778e-11
Identity = 18/52 (34.62%), Postives = 26/52 (50.00%), Query Frame = 2 
Query:  683 LPSHNQPGEICIRGPQIMKGY--------LNDPEATAATIDVE-GWLLTGDL 811
            +P   Q G + +RGP IM+GY        L  P A  A  +++  W  TGD+
Sbjct:  547 VPGIAQGGRLQLRGPNIMRGYLRVENPGVLEQPSAENAQGELDANWYDTGDI 598
The following BLAST results are available for this feature:
BLAST of DY258515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
AAS_YERPY1.092e-1126.80Bifunctional protein aas OS=Yersinia pseudotubercu... [more]
AAS_YERPS1.092e-1126.80Bifunctional protein aas OS=Yersinia pseudotubercu... [more]
AAS_YERPP1.092e-1126.80Bifunctional protein aas OS=Yersinia pestis (strai... [more]
AAS_YERPG1.092e-1126.80Bifunctional protein aas OS=Yersinia pestis bv. An... [more]
AAS_YERPB1.092e-1126.80Bifunctional protein aas OS=Yersinia pseudotubercu... [more]
AAS_YERP31.092e-1126.80Bifunctional protein aas OS=Yersinia pseudotubercu... [more]
AAS_YERPE6.778e-1126.29Bifunctional protein aas OS=Yersinia pestis GN=aas... [more]
AAS_YERPA6.778e-1126.29Bifunctional protein aas OS=Yersinia pestis bv. An... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AF11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258515 ID=DY258515; Name=DY258515; organism=Citrus clementina; type=EST; length=1287bp
CGATCGATGCCCCTCCGGAGAATTGCCTGCATTTCACAGTGTTATCGGAA
GCAGATGAGGATCAAATCCCAGAAGTTGCCATCAAGCCCGACGATCCTGT
GGCGTTGCCTTTCTCTTCGGGCACCACGGGATTGCCTAAAGGAGTGGTGC
TGACGCACAAGAGCTTGATCACCAGCGTGGCGCAGCAAGTGGATGGAGAG
AACCCGAATCTTTACTTGACAAACGGAGACGTTGTGCTGTGCGTTTTACC
TTTGTTTCACATTTATTCGTTGAACAGCGTGCTTCTGTGCTCGTTGAGAG
CTGGGGCTGGGGTTCTGTTGATGCAGAAGTTTGAGATAGGGGCGCTGCTG
GAGCTGATACAGCGGCACAGGGTGTCGGTGGCGGCTGTGGTGCCGCCCTT
GGTGCTGGCGCTGGCCAAGAACCCGATGGTGGCGGATTATGACCTGAGCT
CGATCAGGGTGGTGCTTTCCGGGGCGGCGCCGCTGGGGAAGGAGCTTGAA
GATGCTCTCCGAAGTAGAGTCCCTCAAGCAATCTTGGGTCAGGGATATGG
AATGACAGAGGCAGGGCCAGTGCTATCAATGTGCCTAGGATTTGCAAAGC
AGCCATTTCCTACAAAGTCAGGATCATGTGGCACCGTTGTTAGAAATGCT
GAGCTCAAAGTTATTGACCCTGNAACTGGTGCCTCCCTTCCCACAATCAA
CCTGGCGAAATTTGCATCCGCGGCCCTCAAATTATGAAAGGTTACTTGAA
TGATCCTGAGGCAACTGCGGCAACTATAGACGTTGAGGGTTGGCTTCTTA
CTGGTGACCTAAGCTTTGTTGATGATGATGATGAGGTTTTCATAGTCGAT
AAGGTCAAGGGAATCATCAAATTCAAAGGGATCCAGGGTGCCGGCCGGCG
GAAATTGAAGCCCCCCTTTTAAAGCCACCATCCATTGCAAAAGCAGCTGG
GGTTCCCCCAAAAAAATGAAGTGGCAGGAAAAGTTCCGGTTGCTTTTGTA
TTTCCAACCATTGGGGTTTAACTTTACCGAGGAACCCATTTAAAAAATAC
AAACAAAAACGGGGGGGGGTTTAACAAAAACGGCACAAAATTTTTTTTTG
TTCCTTGCGCATCCCAAATTCCCTTTCCGGGAAAAATTTTGGGAAAAAAA
CCCCAAAAACCAAGACGCCCCCCTCCCCACGGCCCCCTTAAAATTATTTC
CTTTTCTTTTTATTATTACTCTTTTTGTTTTTTCTGTTCCGCCCCCGCTG
TTGGTGTGTGGGGGGCGATTTCCCACAAAAACCCCAC
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